Wall clock time and date at job start Tue Mar 31 2020 13:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46724 * 179.97438 * 3 2 1 5 5 C 1.33857 * 124.51905 * 89.73388 * 4 3 2 6 6 C 1.37411 * 115.11179 * 179.78253 * 5 4 3 7 7 C 1.36749 * 113.28846 * 0.48552 * 6 5 4 8 8 C 1.46395 * 125.46555 * 179.75808 * 7 6 5 9 9 O 1.21629 * 119.99949 * 0.02562 * 8 7 6 10 10 O 1.34895 * 119.99965 * 179.97438 * 8 7 6 11 11 C 1.45209 * 117.00030 * 180.02562 * 10 8 7 12 12 C 1.53033 * 109.45772 * 270.06940 * 11 10 8 13 13 C 1.53191 * 109.31486 * 178.61274 * 12 11 10 14 14 N 1.46927 * 108.77436 * 54.63195 * 13 12 11 15 15 C 1.36934 * 120.63230 * 126.41747 * 14 13 12 16 16 H 1.08005 * 119.99909 * 331.82592 * 15 14 13 17 17 C 1.38810 * 120.00215 * 151.82685 * 15 14 13 18 18 N 1.31615 * 119.99924 * 343.07204 * 17 15 14 19 19 Si 1.86805 * 120.00056 * 163.07353 * 17 15 14 20 20 H 1.48495 * 109.47189 * 89.99829 * 19 17 15 21 21 H 1.48495 * 109.47082 * 209.99928 * 19 17 15 22 22 H 1.48504 * 109.46873 * 329.99903 * 19 17 15 23 23 C 1.46926 * 118.73765 * 306.39620 * 14 13 12 24 24 C 1.53033 * 109.46103 * 149.99691 * 11 10 8 25 25 S 1.70615 * 124.52006 * 270.02107 * 4 3 2 26 26 H 1.09007 * 109.47310 * 299.99688 * 1 2 3 27 27 H 1.08996 * 109.47534 * 59.99931 * 1 2 3 28 28 H 1.08998 * 109.47677 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46979 * 239.99613 * 2 1 3 30 30 H 1.09003 * 109.47022 * 120.00434 * 2 1 3 31 31 H 1.08998 * 109.47039 * 60.00428 * 3 2 1 32 32 H 1.08994 * 109.47091 * 299.99699 * 3 2 1 33 33 H 1.08003 * 122.44510 * 359.96271 * 5 4 3 34 34 H 1.08002 * 123.35646 * 180.26019 * 6 5 4 35 35 H 1.09003 * 109.45665 * 30.02599 * 11 10 8 36 36 H 1.08998 * 109.49688 * 298.56262 * 12 11 10 37 37 H 1.08997 * 109.50040 * 58.66039 * 12 11 10 38 38 H 1.08996 * 109.58612 * 294.85054 * 13 12 11 39 39 H 1.08990 * 109.70652 * 174.48982 * 13 12 11 40 40 H 0.97004 * 119.99621 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.58619 * 293.81862 * 23 14 13 42 42 H 1.09006 * 109.70576 * 173.46443 * 23 14 13 43 43 H 1.08996 * 109.50263 * 301.34312 * 24 11 10 44 44 H 1.09008 * 109.49716 * 61.43301 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4423 0.0006 5 6 4.3060 1.4370 -1.1019 6 6 5.6615 1.4426 -0.8768 7 6 5.9891 1.4422 0.4509 8 6 7.3502 1.4424 0.9900 9 8 8.3034 1.4435 0.2346 10 8 7.5470 1.4425 2.3245 11 6 8.9232 1.4433 2.7878 12 6 9.4078 0.0006 2.9487 13 6 10.8704 0.0052 3.4043 14 7 10.9838 0.8193 4.6221 15 6 11.5622 0.3068 5.7526 16 1 11.5285 -0.7559 5.9421 17 6 12.1918 1.1532 6.6549 18 7 12.5301 2.3712 6.2887 19 14 12.5589 0.5633 8.3889 20 1 13.9029 -0.0672 8.4232 21 1 12.5301 1.7187 9.3213 22 1 11.5352 -0.4307 8.8007 23 6 10.4653 2.1939 4.6038 24 6 9.0073 2.1648 4.1348 25 16 4.5133 1.4419 1.4068 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.8838 1.4316 -2.0960 34 1 6.3952 1.4434 -1.6694 35 1 9.5510 1.9580 2.0604 36 1 8.7962 -0.5075 3.6943 37 1 9.3256 -0.5194 1.9944 38 1 11.4959 0.4316 2.6202 39 1 11.1929 -1.0144 3.6150 40 1 12.9697 2.9628 6.9194 41 1 11.0579 2.7988 3.9174 42 1 10.5185 2.6202 5.6056 43 1 8.6400 3.1850 4.0246 44 1 8.3994 1.6362 4.8692 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870245677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:43 Heat of formation + Delta-G solvation = -66.755651 kcal Electronic energy + Delta-G solvation = -24414.147066 eV Core-core repulsion = 20843.484850 eV Total energy + Delta-G solvation = -3570.662216 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.62566 -39.49033 -38.82431 -37.29318 -35.80237 -34.61953 -32.26717 -31.65489 -31.26142 -28.37276 -27.01174 -25.09968 -24.18709 -23.89578 -22.74791 -22.33984 -21.10712 -20.17354 -19.41599 -18.86631 -17.78780 -17.15894 -17.11220 -16.80529 -16.05776 -15.80522 -15.44704 -15.39668 -14.96429 -14.88169 -14.62895 -14.43129 -14.25142 -14.17322 -13.60614 -13.43685 -13.29114 -13.08758 -12.78256 -12.73351 -12.61841 -12.50915 -12.37801 -12.18732 -12.07138 -12.01177 -11.94240 -11.87652 -11.69652 -11.49408 -11.45925 -11.12631 -10.57596 -9.78358 -9.60798 -8.77750 -7.91602 -5.37699 -0.69447 0.39467 0.90771 1.16376 1.46924 1.49160 1.53260 1.59576 1.86925 2.50018 3.25033 3.51109 3.61972 3.68487 3.75843 3.80678 4.05879 4.10755 4.16767 4.22906 4.32335 4.36019 4.52764 4.61431 4.68954 4.70433 4.74743 4.82659 4.86093 4.91008 4.97778 5.00540 5.02047 5.09786 5.17802 5.23089 5.29578 5.34309 5.39182 5.41001 5.47168 5.60323 5.65257 6.34830 6.56551 7.09537 7.77579 8.31191 9.16385 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025066 B = 0.002385 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.785093 B =11737.462959 C =12293.737200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.053 4.053 4 C -0.176 4.176 5 C -0.162 4.162 6 C -0.034 4.034 7 C -0.303 4.303 8 C 0.533 3.467 9 O -0.534 6.534 10 O -0.352 6.352 11 C 0.107 3.893 12 C -0.133 4.133 13 C 0.147 3.853 14 N -0.610 5.610 15 C -0.266 4.266 16 H 0.070 0.930 17 C -0.050 4.050 18 N -0.935 5.935 19 Si 0.971 3.029 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.269 1.269 23 C 0.181 3.819 24 C -0.121 4.121 25 S 0.254 5.746 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.175 0.825 34 H 0.156 0.844 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.014 0.986 39 H 0.068 0.932 40 H 0.252 0.748 41 H 0.001 0.999 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.942 -2.052 -14.331 29.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.092 4.092 4 C -0.297 4.297 5 C -0.192 4.192 6 C -0.069 4.069 7 C -0.421 4.421 8 C 0.379 3.621 9 O -0.426 6.426 10 O -0.269 6.269 11 C 0.053 3.947 12 C -0.172 4.172 13 C 0.021 3.979 14 N -0.333 5.333 15 C -0.396 4.396 16 H 0.087 0.913 17 C -0.245 4.245 18 N -0.581 5.581 19 Si 0.799 3.201 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.194 1.194 23 C 0.055 3.945 24 C -0.160 4.160 25 S 0.524 5.476 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.192 0.808 34 H 0.174 0.826 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.032 0.968 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.019 0.981 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.859 -1.944 -12.829 28.932 hybrid contribution 1.457 -0.008 -0.765 1.645 sum -24.402 -1.952 -13.594 28.001 Atomic orbital electron populations 1.21766 0.94302 1.02290 1.02523 1.21569 0.96810 0.94961 1.02549 1.20435 0.84853 0.98773 1.05140 1.24917 1.02701 1.04387 0.97657 1.20123 0.91093 1.06746 1.01191 1.21022 0.97744 0.94127 0.93963 1.23563 0.94675 1.24862 0.98986 1.20150 0.88825 0.72048 0.81058 1.90846 1.43837 1.48156 1.59794 1.86626 1.33199 1.83701 1.23344 1.22688 0.78102 0.97919 0.96007 1.22283 0.98559 0.95059 1.01318 1.20946 0.92855 0.95890 0.88161 1.44369 1.68014 1.11764 1.09174 1.19509 1.28745 0.93308 0.98038 0.91251 1.25861 0.98073 0.97202 1.03373 1.70171 1.43820 1.08934 1.35150 0.85227 0.78025 0.77166 0.79702 1.21141 1.21691 1.19411 1.20586 0.88438 0.85607 0.99870 1.22195 0.99628 1.00112 0.94077 1.83366 0.91806 1.65863 1.06544 0.92306 0.91732 0.92347 0.91406 0.92421 0.89583 0.87703 0.80818 0.82646 0.91577 0.90969 0.91351 0.96757 0.91372 0.93865 0.98072 0.91116 0.90465 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 71.98 0.71 -0.28 16 2 C -0.12 -1.04 5.92 30.59 0.18 -0.86 16 3 C -0.05 -0.46 5.65 29.85 0.17 -0.29 16 4 C -0.18 -2.53 5.53 24.69 0.14 -2.40 16 5 C -0.16 -2.40 9.99 21.08 0.21 -2.19 16 6 C -0.03 -0.71 10.01 21.73 0.22 -0.49 16 7 C -0.30 -7.88 6.45 24.05 0.16 -7.72 16 8 C 0.53 17.97 7.90 69.94 0.55 18.52 16 9 O -0.53 -20.73 16.10 19.42 0.31 -20.41 16 10 O -0.35 -12.31 9.74 -58.10 -0.57 -12.87 16 11 C 0.11 4.12 2.42 30.62 0.07 4.19 16 12 C -0.13 -5.06 5.72 30.67 0.18 -4.89 16 13 C 0.15 6.48 6.52 86.36 0.56 7.04 16 14 N -0.61 -31.46 2.99 -699.11 -2.09 -33.55 16 15 C -0.27 -14.74 9.58 84.03 0.81 -13.94 16 16 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 17 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 18 N -0.94 -55.35 11.19 21.65 0.24 -55.11 16 19 Si 0.97 44.73 29.59 68.60 2.03 46.76 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 C 0.18 8.94 5.30 86.36 0.46 9.40 16 24 C -0.12 -4.83 5.74 30.67 0.18 -4.65 16 25 S 0.25 5.00 22.87 -56.49 -1.29 3.71 16 26 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 27 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.07 2.74 7.16 -2.39 -0.02 2.73 16 36 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.07 2.86 7.93 -2.39 -0.02 2.84 16 40 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.07 3.86 6.07 -2.38 -0.01 3.84 16 43 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 Total: -1.00 -67.07 374.68 4.62 -62.45 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.98 Total: 9.95 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 5.00 Total: -0.93 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -1.85 Total: -88.65 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.25 Total: -33.29 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.29 Total: 3.71 kcal Total: -67.07 4.62 -62.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870245677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.301 kcal (2) G-P(sol) polarization free energy of solvation -67.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds