Wall clock time and date at job start Tue Mar 31 2020 14:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00279 * 2 1 4 4 C 1.52998 * 109.46993 * 59.99866 * 3 2 1 5 5 C 1.53001 * 109.46936 * 299.99897 * 3 2 1 6 6 C 1.52996 * 109.47390 * 180.02562 * 3 2 1 7 7 C 1.53007 * 109.47000 * 64.99664 * 6 3 2 8 8 N 1.46498 * 109.46662 * 180.02562 * 7 6 3 9 9 C 1.34783 * 119.99450 * 180.02562 * 8 7 6 10 10 O 1.21606 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.47433 * 119.99777 * 179.97438 * 9 8 7 12 12 C 1.39678 * 120.21285 * 359.97438 * 11 9 8 13 13 C 1.37809 * 119.93418 * 180.02562 * 12 11 9 14 14 C 1.38660 * 120.38295 * 0.02562 * 13 12 11 15 15 C 1.37910 * 120.43889 * 0.02562 * 14 13 12 16 16 C 1.39110 * 120.04977 * 359.97438 * 15 14 13 17 17 S 1.76195 * 120.19106 * 180.02562 * 16 15 14 18 18 C 1.76205 * 99.99901 * 6.85682 * 17 16 15 19 19 H 1.08005 * 119.99976 * 5.65159 * 18 17 16 20 20 C 1.38804 * 120.00248 * 185.65626 * 18 17 16 21 21 N 1.31558 * 119.99610 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46991 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47417 * 119.99708 * 22 20 18 25 25 H 1.48506 * 109.47217 * 240.00232 * 22 20 18 26 26 H 1.09000 * 109.47215 * 59.99758 * 1 2 3 27 27 H 1.08997 * 109.47385 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47013 * 300.00644 * 1 2 3 29 29 H 1.09006 * 109.46869 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47212 * 300.00008 * 4 3 2 31 31 H 1.08995 * 109.47046 * 60.00401 * 4 3 2 32 32 H 1.08997 * 109.47132 * 300.00072 * 5 3 2 33 33 H 1.09001 * 109.47189 * 60.00041 * 5 3 2 34 34 H 1.08997 * 109.46854 * 179.97438 * 5 3 2 35 35 H 1.09005 * 109.47151 * 305.00034 * 6 3 2 36 36 H 1.08995 * 109.47394 * 185.00066 * 6 3 2 37 37 H 1.09000 * 109.47129 * 60.00596 * 7 6 3 38 38 H 1.09003 * 109.47146 * 300.00209 * 7 6 3 39 39 H 0.97003 * 120.00826 * 359.97438 * 8 7 6 40 40 H 1.07994 * 120.03669 * 0.27820 * 12 11 9 41 41 H 1.08006 * 119.80802 * 179.97438 * 13 12 11 42 42 H 1.08007 * 119.77539 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.97290 * 179.97438 * 15 14 13 44 44 H 0.96997 * 119.99773 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5588 2.0647 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5354 1.1846 -0.0006 7 6 3.9952 0.5368 -1.3083 8 7 5.4555 0.4206 -1.3086 9 6 6.0879 -0.1239 -2.3670 10 8 5.4463 -0.5182 -3.3218 11 6 7.5577 -0.2404 -2.3676 12 6 8.2991 0.2126 -1.2740 13 6 9.6727 0.1014 -1.2808 14 6 10.3256 -0.4579 -2.3687 15 6 9.6090 -0.9092 -3.4572 16 6 8.2218 -0.8059 -3.4695 17 16 7.3026 -1.3819 -4.8579 18 6 8.5930 -2.1449 -5.7839 19 1 9.5859 -2.2204 -5.3656 20 6 8.3336 -2.6488 -7.0510 21 7 7.1241 -2.5571 -7.5603 22 14 9.7014 -3.4583 -8.0323 23 1 10.9581 -3.4357 -7.2415 24 1 9.3300 -4.8645 -8.3323 25 1 9.9037 -2.7178 -9.3036 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 2.0019 3.0607 1.2490 30 1 0.4722 2.1508 1.2492 31 1 1.8804 1.5238 2.1392 32 1 1.8804 1.5237 -2.1392 33 1 0.4722 2.1508 -1.2493 34 1 2.0018 3.0606 -1.2490 35 1 3.8515 0.5682 0.8410 36 1 3.9785 2.1764 0.0889 37 1 3.6792 1.1532 -2.1499 38 1 3.5520 -0.4551 -1.3979 39 1 5.9674 0.7361 -0.5475 40 1 7.7962 0.6458 -0.4221 41 1 10.2440 0.4527 -0.4342 42 1 11.4024 -0.5406 -2.3635 43 1 10.1253 -1.3432 -4.3007 44 1 6.9429 -2.9089 -8.4459 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871251680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:33 Heat of formation + Delta-G solvation = -60.877405 kcal Electronic energy + Delta-G solvation = -24528.436952 eV Core-core repulsion = 20958.029636 eV Total energy + Delta-G solvation = -3570.407316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.70856 -39.10905 -37.40936 -35.15472 -33.19831 -32.72344 -30.82849 -30.23531 -28.94825 -27.76930 -26.89311 -25.79580 -23.91607 -22.40902 -21.76604 -20.31398 -19.81875 -18.16656 -17.17017 -16.56768 -16.13474 -15.72843 -15.38865 -15.18589 -15.11368 -15.00515 -14.39934 -13.91958 -13.79628 -13.65841 -13.56616 -13.16833 -12.94410 -12.66380 -12.61953 -12.28166 -12.00526 -11.95187 -11.77586 -11.56602 -11.48039 -11.19555 -11.17274 -11.06151 -10.88618 -10.68408 -10.29477 -9.76747 -9.75721 -9.59520 -9.46643 -8.71498 -8.65831 -8.28914 -8.01391 -6.49828 -6.43254 -4.13445 1.57863 2.05199 3.12789 3.14003 3.22338 3.44786 3.50855 3.58420 3.61612 4.09120 4.50557 4.53601 4.54600 4.74648 4.97678 5.07095 5.09149 5.15285 5.15951 5.17847 5.28869 5.33337 5.38425 5.44436 5.47305 5.51116 5.55900 5.63122 5.77477 5.82628 5.89127 5.98093 6.13133 6.15013 6.22795 6.42393 6.63195 6.83470 6.89533 7.03416 7.06808 7.16727 7.47921 7.62495 7.98154 8.19509 8.86959 9.03035 10.60052 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.002992 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.429369 B = 9354.563879 C =10852.293589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.375 6.375 3 C 0.115 3.885 4 C -0.177 4.177 5 C -0.186 4.186 6 C -0.116 4.116 7 C 0.123 3.877 8 N -0.740 5.740 9 C 0.551 3.449 10 O -0.509 6.509 11 C -0.177 4.177 12 C -0.061 4.061 13 C -0.187 4.187 14 C -0.078 4.078 15 C -0.153 4.153 16 C -0.057 4.057 17 S 0.184 5.816 18 C -0.595 4.595 19 H 0.091 0.909 20 C 0.083 3.917 21 N -0.858 5.858 22 Si 0.919 3.081 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.393 0.607 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.712 9.618 17.050 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.294 6.294 3 C 0.075 3.925 4 C -0.235 4.235 5 C -0.243 4.243 6 C -0.154 4.154 7 C -0.001 4.001 8 N -0.394 5.394 9 C 0.340 3.660 10 O -0.386 6.386 11 C -0.192 4.192 12 C -0.081 4.081 13 C -0.212 4.212 14 C -0.100 4.100 15 C -0.179 4.179 16 C -0.177 4.177 17 S 0.448 5.552 18 C -0.742 4.742 19 H 0.109 0.891 20 C -0.128 4.128 21 N -0.491 5.491 22 Si 0.745 3.255 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.203 1.203 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.227 0.773 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.156 0.844 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.567 9.039 15.530 20.357 hybrid contribution 2.232 -0.127 0.176 2.243 sum -7.334 8.912 15.706 19.491 Atomic orbital electron populations 1.22783 0.81652 1.02694 0.99999 1.88020 1.19395 1.27023 1.94976 1.21398 0.93135 0.83561 0.94409 1.22411 1.01859 1.00947 0.98235 1.22539 1.01727 1.01188 0.98835 1.21777 0.92883 1.01939 0.98792 1.21302 0.80256 1.01735 0.96766 1.45851 1.07128 1.65386 1.21061 1.18303 0.87625 0.77805 0.82259 1.90783 1.67055 1.47154 1.33593 1.19143 0.91736 1.11519 0.96797 1.20891 0.94191 0.97216 0.95850 1.20630 0.94092 1.06979 0.99508 1.21081 0.98926 0.96527 0.93430 1.21436 0.93154 1.03451 0.99821 1.23090 0.97429 0.97103 1.00033 1.84790 1.08040 1.55334 1.07009 1.24104 1.00611 1.44327 1.05122 0.89119 1.25100 0.96488 0.94751 0.96461 1.69991 1.19816 1.41989 1.17267 0.86102 0.81030 0.78960 0.79452 1.19164 1.20243 1.20261 0.93708 0.89741 0.94038 0.91368 0.92097 0.91670 0.90658 0.92216 0.91310 0.90428 0.90013 0.91485 0.90853 0.77256 0.87185 0.87113 0.87056 0.84387 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.21 101.05 1.03 1.24 16 2 O -0.37 -4.18 9.88 -35.23 -0.35 -4.53 16 3 C 0.11 1.05 0.82 -90.62 -0.07 0.97 16 4 C -0.18 -1.24 8.25 37.16 0.31 -0.93 16 5 C -0.19 -1.63 7.76 37.16 0.29 -1.35 16 6 C -0.12 -1.10 4.62 -26.73 -0.12 -1.22 16 7 C 0.12 1.64 5.08 -4.04 -0.02 1.62 16 8 N -0.74 -10.88 5.51 -61.38 -0.34 -11.21 16 9 C 0.55 11.01 7.75 -12.51 -0.10 10.91 16 10 O -0.51 -12.28 13.77 5.27 0.07 -12.21 16 11 C -0.18 -3.57 5.89 -104.75 -0.62 -4.18 16 12 C -0.06 -0.98 9.53 -39.20 -0.37 -1.36 16 13 C -0.19 -2.92 10.02 -39.58 -0.40 -3.31 16 14 C -0.08 -1.34 10.03 -39.55 -0.40 -1.74 16 15 C -0.15 -3.26 9.22 -39.38 -0.36 -3.62 16 16 C -0.06 -1.32 6.14 -38.39 -0.24 -1.55 16 17 S 0.18 5.02 18.56 -107.50 -2.00 3.02 16 18 C -0.60 -16.61 9.00 30.94 0.28 -16.33 16 19 H 0.09 2.41 4.98 -52.48 -0.26 2.14 16 20 C 0.08 2.30 5.49 -17.46 -0.10 2.20 16 21 N -0.86 -25.00 13.22 55.49 0.73 -24.26 16 22 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 26 H 0.04 0.34 6.42 -51.93 -0.33 0.01 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.28 6.42 -51.93 -0.33 -0.05 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.39 6.54 -51.93 -0.34 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.80 6.34 -51.93 -0.33 0.47 16 33 H 0.06 0.46 6.54 -51.93 -0.34 0.12 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.95 6.34 -51.93 -0.33 0.62 16 38 H 0.07 1.15 7.82 -51.93 -0.41 0.75 16 39 H 0.39 4.51 6.50 -40.82 -0.27 4.24 16 40 H 0.11 1.32 6.40 -52.49 -0.34 0.98 16 41 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.14 3.05 5.04 -52.49 -0.26 2.79 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -33.13 364.27 -8.35 -41.49 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.06 Total: 5.00 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -0.89 Total: -18.66 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.40 Total: -35.48 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.28 Total: -16.74 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -2.00 Total: 3.02 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.13 -8.35 -41.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871251680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.391 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds