Wall clock time and date at job start Tue Mar 31 2020 14:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00279 * 2 1 4 4 C 1.52998 * 109.46993 * 59.99866 * 3 2 1 5 5 C 1.53001 * 109.46936 * 299.99897 * 3 2 1 6 6 C 1.52996 * 109.47390 * 180.02562 * 3 2 1 7 7 C 1.53007 * 109.47000 * 64.99664 * 6 3 2 8 8 N 1.46498 * 109.46662 * 180.02562 * 7 6 3 9 9 C 1.34783 * 119.99450 * 180.02562 * 8 7 6 10 10 O 1.21606 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.47433 * 119.99777 * 179.97438 * 9 8 7 12 12 C 1.39678 * 120.21285 * 359.97438 * 11 9 8 13 13 C 1.37809 * 119.93418 * 180.02562 * 12 11 9 14 14 C 1.38660 * 120.38295 * 0.02562 * 13 12 11 15 15 C 1.37910 * 120.43889 * 0.02562 * 14 13 12 16 16 C 1.39110 * 120.04977 * 359.97438 * 15 14 13 17 17 S 1.76195 * 120.19106 * 180.02562 * 16 15 14 18 18 C 1.76205 * 99.99901 * 6.85682 * 17 16 15 19 19 H 1.08005 * 119.99976 * 5.65159 * 18 17 16 20 20 C 1.38804 * 120.00248 * 185.65626 * 18 17 16 21 21 N 1.31558 * 119.99610 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46991 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47417 * 119.99708 * 22 20 18 25 25 H 1.48506 * 109.47217 * 240.00232 * 22 20 18 26 26 H 1.09000 * 109.47215 * 59.99758 * 1 2 3 27 27 H 1.08997 * 109.47385 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47013 * 300.00644 * 1 2 3 29 29 H 1.09006 * 109.46869 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47212 * 300.00008 * 4 3 2 31 31 H 1.08995 * 109.47046 * 60.00401 * 4 3 2 32 32 H 1.08997 * 109.47132 * 300.00072 * 5 3 2 33 33 H 1.09001 * 109.47189 * 60.00041 * 5 3 2 34 34 H 1.08997 * 109.46854 * 179.97438 * 5 3 2 35 35 H 1.09005 * 109.47151 * 305.00034 * 6 3 2 36 36 H 1.08995 * 109.47394 * 185.00066 * 6 3 2 37 37 H 1.09000 * 109.47129 * 60.00596 * 7 6 3 38 38 H 1.09003 * 109.47146 * 300.00209 * 7 6 3 39 39 H 0.97003 * 120.00826 * 359.97438 * 8 7 6 40 40 H 1.07994 * 120.03669 * 0.27820 * 12 11 9 41 41 H 1.08006 * 119.80802 * 179.97438 * 13 12 11 42 42 H 1.08007 * 119.77539 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.97290 * 179.97438 * 15 14 13 44 44 H 0.96997 * 119.99773 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5588 2.0647 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5354 1.1846 -0.0006 7 6 3.9952 0.5368 -1.3083 8 7 5.4555 0.4206 -1.3086 9 6 6.0879 -0.1239 -2.3670 10 8 5.4463 -0.5182 -3.3218 11 6 7.5577 -0.2404 -2.3676 12 6 8.2991 0.2126 -1.2740 13 6 9.6727 0.1014 -1.2808 14 6 10.3256 -0.4579 -2.3687 15 6 9.6090 -0.9092 -3.4572 16 6 8.2218 -0.8059 -3.4695 17 16 7.3026 -1.3819 -4.8579 18 6 8.5930 -2.1449 -5.7839 19 1 9.5859 -2.2204 -5.3656 20 6 8.3336 -2.6488 -7.0510 21 7 7.1241 -2.5571 -7.5603 22 14 9.7014 -3.4583 -8.0323 23 1 10.9581 -3.4357 -7.2415 24 1 9.3300 -4.8645 -8.3323 25 1 9.9037 -2.7178 -9.3036 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 2.0019 3.0607 1.2490 30 1 0.4722 2.1508 1.2492 31 1 1.8804 1.5238 2.1392 32 1 1.8804 1.5237 -2.1392 33 1 0.4722 2.1508 -1.2493 34 1 2.0018 3.0606 -1.2490 35 1 3.8515 0.5682 0.8410 36 1 3.9785 2.1764 0.0889 37 1 3.6792 1.1532 -2.1499 38 1 3.5520 -0.4551 -1.3979 39 1 5.9674 0.7361 -0.5475 40 1 7.7962 0.6458 -0.4221 41 1 10.2440 0.4527 -0.4342 42 1 11.4024 -0.5406 -2.3635 43 1 10.1253 -1.3432 -4.3007 44 1 6.9429 -2.9089 -8.4459 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871251680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:33 Heat of formation + Delta-G solvation = -83.751664 kcal Electronic energy + Delta-G solvation = -24529.428855 eV Core-core repulsion = 20958.029636 eV Total energy + Delta-G solvation = -3571.399218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.03298 -40.07842 -38.91737 -36.36324 -34.76314 -34.22137 -32.22905 -31.76832 -29.93515 -28.42110 -27.84185 -27.62956 -25.15955 -23.73018 -23.18605 -21.67183 -20.77479 -19.89429 -18.76357 -17.50879 -17.30462 -17.13839 -16.99197 -16.33846 -16.23519 -16.10105 -15.78324 -15.40461 -15.28358 -14.94303 -14.67830 -14.39942 -14.35900 -13.79307 -13.50910 -13.31515 -13.25211 -13.00520 -12.92373 -12.85955 -12.68854 -12.52347 -12.49299 -12.34544 -12.04343 -11.93971 -11.52378 -11.43614 -11.38830 -11.18491 -10.46348 -10.40522 -10.09803 -9.89863 -9.73577 -8.46232 -8.44913 -6.24173 0.05337 0.55435 1.26672 1.35215 1.45724 1.65711 2.04416 2.17363 2.29947 2.87952 2.88780 3.05841 3.25567 3.74151 3.82531 3.98786 4.02742 4.07109 4.23592 4.28517 4.37983 4.47312 4.53904 4.62684 4.63325 4.66945 4.71586 4.72589 4.86646 4.89511 4.91214 5.02292 5.06043 5.11903 5.18629 5.26182 5.37700 5.39633 5.46826 5.54673 5.59353 5.68761 6.11026 6.17678 6.35799 6.68017 6.96062 7.40132 8.60972 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.002992 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.429369 B = 9354.563879 C =10852.293589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.406 6.406 3 C 0.109 3.891 4 C -0.171 4.171 5 C -0.185 4.185 6 C -0.106 4.106 7 C 0.125 3.875 8 N -0.713 5.713 9 C 0.542 3.458 10 O -0.559 6.559 11 C -0.182 4.182 12 C -0.053 4.053 13 C -0.157 4.157 14 C -0.070 4.070 15 C -0.176 4.176 16 C -0.073 4.073 17 S 0.059 5.941 18 C -0.600 4.600 19 H 0.095 0.905 20 C 0.023 3.977 21 N -0.906 5.906 22 Si 0.995 3.005 23 H -0.257 1.257 24 H -0.271 1.271 25 H -0.269 1.269 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.413 0.587 40 H 0.163 0.837 41 H 0.168 0.832 42 H 0.150 0.850 43 H 0.118 0.882 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.513 11.774 21.460 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.326 6.326 3 C 0.069 3.931 4 C -0.228 4.228 5 C -0.243 4.243 6 C -0.144 4.144 7 C 0.002 3.998 8 N -0.367 5.367 9 C 0.331 3.669 10 O -0.440 6.440 11 C -0.196 4.196 12 C -0.073 4.073 13 C -0.179 4.179 14 C -0.091 4.091 15 C -0.201 4.201 16 C -0.191 4.191 17 S 0.318 5.682 18 C -0.747 4.747 19 H 0.112 0.888 20 C -0.183 4.183 21 N -0.541 5.541 22 Si 0.816 3.184 23 H -0.180 1.180 24 H -0.196 1.196 25 H -0.194 1.194 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.252 0.748 40 H 0.181 0.819 41 H 0.185 0.815 42 H 0.167 0.833 43 H 0.136 0.864 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.330 11.258 20.081 24.160 hybrid contribution 1.591 -0.612 -0.792 1.879 sum -5.739 10.646 19.289 22.768 Atomic orbital electron populations 1.22911 0.80512 1.03212 1.00950 1.87980 1.20869 1.28515 1.95203 1.21557 0.92752 0.83195 0.95579 1.22351 1.02431 1.01321 0.96683 1.22536 1.02493 1.01504 0.97717 1.21785 0.93428 1.03053 0.96106 1.21331 0.79035 1.00368 0.99109 1.45634 1.07839 1.63241 1.20027 1.18573 0.87943 0.77658 0.82711 1.90784 1.67964 1.49386 1.35856 1.19520 0.92259 1.10665 0.97143 1.21465 0.94765 0.95550 0.95489 1.21343 0.94022 1.02884 0.99698 1.21550 1.00838 0.94559 0.92132 1.21447 0.92515 1.04952 1.01185 1.22987 0.98080 0.98953 0.99048 1.84986 1.11178 1.60418 1.11665 1.24278 1.00336 1.44602 1.05496 0.88783 1.26175 0.99113 0.95446 0.97548 1.70148 1.22188 1.43989 1.17781 0.84969 0.77791 0.77841 0.77790 1.18012 1.19610 1.19413 0.93577 0.89618 0.92175 0.89697 0.91441 0.91476 0.93424 0.91290 0.89840 0.89541 0.87178 0.92668 0.93905 0.74827 0.81919 0.81482 0.83259 0.86428 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.21 113.37 1.16 1.48 16 2 O -0.41 -8.89 9.88 -148.98 -1.47 -10.36 16 3 C 0.11 1.81 0.82 -10.80 -0.01 1.80 16 4 C -0.17 -1.85 8.25 71.98 0.59 -1.26 16 5 C -0.19 -3.12 7.76 71.98 0.56 -2.56 16 6 C -0.11 -1.76 4.62 30.60 0.14 -1.62 16 7 C 0.13 3.34 5.08 86.38 0.44 3.78 16 8 N -0.71 -19.97 5.51 -466.34 -2.57 -22.53 16 9 C 0.54 22.07 7.75 86.66 0.67 22.74 16 10 O -0.56 -29.11 13.77 -4.05 -0.06 -29.16 16 11 C -0.18 -7.21 5.89 -19.95 -0.12 -7.33 16 12 C -0.05 -1.43 9.53 22.52 0.21 -1.21 16 13 C -0.16 -3.83 10.02 22.27 0.22 -3.61 16 14 C -0.07 -2.12 10.03 22.29 0.22 -1.90 16 15 C -0.18 -7.45 9.22 22.40 0.21 -7.24 16 16 C -0.07 -3.49 6.14 23.04 0.14 -3.35 16 17 S 0.06 3.50 18.56 -56.49 -1.05 2.45 16 18 C -0.60 -35.87 9.00 67.96 0.61 -35.26 16 19 H 0.09 5.30 4.98 -2.91 -0.01 5.29 16 20 C 0.02 1.32 5.49 84.87 0.47 1.79 16 21 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 22 Si 1.00 44.77 29.55 68.60 2.03 46.80 16 23 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H 0.05 0.70 6.42 -2.39 -0.02 0.68 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 0.71 6.42 -2.39 -0.02 0.70 16 29 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.07 0.66 6.54 -2.39 -0.02 0.64 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 1.06 6.34 -2.39 -0.02 1.05 16 33 H 0.07 1.01 6.54 -2.39 -0.02 0.99 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.63 6.34 -2.39 -0.02 1.62 16 38 H 0.04 1.42 7.82 -2.39 -0.02 1.40 16 39 H 0.41 7.80 6.50 -92.71 -0.60 7.20 16 40 H 0.16 2.68 6.40 -2.91 -0.02 2.67 16 41 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 42 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 43 H 0.12 5.40 5.04 -2.91 -0.01 5.39 16 44 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -83.41 364.27 3.12 -80.30 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.43 Total: 22.62 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 5.52 Total: -33.75 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -2.28 Total: -78.89 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -1.53 Total: -39.52 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -1.05 Total: 2.45 kcal Total: -83.41 3.12 -80.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871251680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.455 kcal (2) G-P(sol) polarization free energy of solvation -83.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds