Wall clock time and date at job start Tue Mar 31 2020 14:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40057 * 125.87102 * 2 1 4 4 C 1.30251 * 109.69302 * 179.78555 * 3 2 1 5 5 C 1.41175 * 108.46634 * 0.37394 * 4 3 2 6 6 C 1.36315 * 125.87308 * 180.02562 * 2 1 3 7 7 N 1.33197 * 134.60304 * 359.92595 * 6 2 1 8 8 C 1.31641 * 120.67663 * 180.02562 * 7 6 2 9 9 Cl 1.73601 * 118.69629 * 180.02562 * 8 7 6 10 10 N 1.32251 * 122.60403 * 0.04167 * 8 7 6 11 11 C 1.32835 * 121.18026 * 359.97438 * 10 8 7 12 12 N 1.38102 * 120.80198 * 180.02562 * 11 10 8 13 13 C 1.46498 * 119.99973 * 359.97438 * 12 11 10 14 14 C 1.52997 * 109.47338 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47043 * 299.99734 * 14 13 12 16 16 C 1.52998 * 109.47265 * 59.99608 * 14 13 12 17 17 C 1.53000 * 109.47295 * 179.97438 * 14 13 12 18 18 C 1.50696 * 109.47562 * 179.97438 * 17 14 13 19 19 H 1.08004 * 119.99770 * 359.97438 * 18 17 14 20 20 C 1.37880 * 120.00277 * 179.97438 * 18 17 14 21 21 N 1.31521 * 119.99762 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00068 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47201 * 89.99461 * 22 20 18 24 24 H 1.48495 * 109.47046 * 210.00107 * 22 20 18 25 25 H 1.48503 * 109.46987 * 329.99872 * 22 20 18 26 26 H 1.09003 * 109.47139 * 269.97347 * 1 2 3 27 27 H 1.09003 * 109.47503 * 29.97447 * 1 2 3 28 28 H 1.09000 * 109.47071 * 149.97277 * 1 2 3 29 29 H 1.08005 * 125.77056 * 180.27830 * 4 3 2 30 30 H 0.97004 * 120.00517 * 179.97438 * 12 11 10 31 31 H 1.09003 * 109.47137 * 299.99956 * 13 12 11 32 32 H 1.08998 * 109.47342 * 59.99396 * 13 12 11 33 33 H 1.08993 * 109.47335 * 59.99770 * 15 14 13 34 34 H 1.09001 * 109.47471 * 180.02562 * 15 14 13 35 35 H 1.09007 * 109.47040 * 300.00102 * 15 14 13 36 36 H 1.08998 * 109.47164 * 60.00657 * 16 14 13 37 37 H 1.09000 * 109.47043 * 179.97438 * 16 14 13 38 38 H 1.08993 * 109.46859 * 300.00075 * 16 14 13 39 39 H 1.09003 * 109.47275 * 299.99959 * 17 14 13 40 40 H 1.09007 * 109.47094 * 59.99710 * 17 14 13 41 41 H 0.97002 * 119.99730 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2856 1.1349 0.0000 4 6 3.5365 0.7720 0.0046 5 6 3.5929 -0.6386 -0.0009 6 6 2.2637 -1.1046 -0.0005 7 7 2.0433 -2.4182 0.0001 8 6 3.0488 -3.2679 -0.0001 9 17 2.7026 -4.9690 0.0000 10 7 4.3122 -2.8769 -0.0002 11 6 4.6332 -1.5879 -0.0006 12 7 5.9552 -1.1884 -0.0012 13 6 7.0234 -2.1909 -0.0010 14 6 8.3824 -1.4882 -0.0011 15 6 8.5042 -0.6136 -1.2507 16 6 8.5042 -0.6129 1.2478 17 6 9.4980 -2.5352 -0.0002 18 6 10.8367 -1.8431 -0.0011 19 1 10.8867 -0.7642 -0.0025 20 6 11.9975 -2.5871 0.0001 21 7 13.1657 -1.9829 -0.0011 22 14 11.9110 -4.4530 0.0019 23 1 11.8884 -4.9489 -1.3977 24 1 13.0989 -5.0029 0.7029 25 1 10.6766 -4.8906 0.7020 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5143 29 1 4.3870 1.4377 0.0100 30 1 6.1765 -0.2439 -0.0018 31 1 6.9370 -2.8137 0.8894 32 1 6.9364 -2.8148 -0.8905 33 1 7.7094 0.1323 -1.2509 34 1 9.4725 -0.1133 -1.2511 35 1 8.4174 -1.2372 -2.1405 36 1 8.4175 -1.2359 2.1380 37 1 9.4726 -0.1126 1.2479 38 1 7.7094 0.1330 1.2475 39 1 9.4112 -3.1580 0.8901 40 1 9.4115 -3.1592 -0.8899 41 1 13.9824 -2.5063 -0.0007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872548118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:07 Heat of formation + Delta-G solvation = 104.760273 kcal Electronic energy + Delta-G solvation = -24680.814193 eV Core-core repulsion = 21044.298167 eV Total energy + Delta-G solvation = -3636.516026 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.20322 -39.34039 -38.12367 -36.90868 -35.43035 -33.52285 -32.56420 -32.03179 -30.09674 -27.87636 -27.46149 -26.65115 -26.04587 -24.41896 -23.36410 -22.18782 -21.02944 -19.13452 -18.18380 -17.88903 -17.09007 -16.82320 -16.42573 -15.50099 -15.45180 -14.97325 -14.51902 -14.44069 -14.26239 -13.89430 -13.54346 -13.12528 -12.96087 -12.93468 -12.82921 -12.32727 -11.89510 -11.88366 -11.56852 -11.50275 -11.26669 -11.14214 -11.06088 -10.93803 -10.67521 -10.57396 -10.05824 -9.80361 -9.68467 -9.66919 -9.40556 -9.18895 -9.05643 -8.57240 -8.15571 -6.07930 -4.05752 0.45757 1.12703 1.20495 1.96979 2.14666 2.93065 3.29113 3.37586 3.40713 3.57232 3.80347 4.22065 4.32843 4.42326 4.51200 4.71646 4.89921 5.02650 5.16056 5.23558 5.23947 5.40662 5.42535 5.54421 5.93638 5.99620 6.01175 6.07346 6.20916 6.22936 6.45815 6.51063 6.62753 6.76188 6.91309 6.94445 6.98995 7.09578 7.13281 7.29727 7.38346 7.73738 7.96428 8.48112 8.95689 9.54495 11.04710 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.003174 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.272494 B = 8819.046261 C =10266.649765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.380 5.380 3 N -0.256 5.256 4 C 0.114 3.886 5 C -0.339 4.339 6 C 0.382 3.618 7 N -0.575 5.575 8 C 0.460 3.540 9 Cl 0.028 6.972 10 N -0.592 5.592 11 C 0.533 3.467 12 N -0.673 5.673 13 C 0.127 3.873 14 C -0.064 4.064 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.001 4.001 18 C -0.513 4.513 19 H 0.078 0.922 20 C 0.067 3.933 21 N -0.903 5.903 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.197 0.803 30 H 0.415 0.585 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.030 0.970 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.594 2.796 -0.043 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.169 5.169 3 N -0.071 5.071 4 C -0.082 4.082 5 C -0.357 4.357 6 C 0.136 3.864 7 N -0.307 5.307 8 C 0.161 3.839 9 Cl 0.055 6.945 10 N -0.325 5.325 11 C 0.279 3.721 12 N -0.301 5.301 13 C 0.004 3.996 14 C -0.065 4.065 15 C -0.188 4.188 16 C -0.187 4.187 17 C -0.038 4.038 18 C -0.550 4.550 19 H 0.096 0.904 20 C -0.134 4.134 21 N -0.542 5.542 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.189 1.189 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.214 0.786 30 H 0.254 0.746 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.500 2.624 -0.043 24.640 hybrid contribution 0.799 -0.749 -0.004 1.095 sum -23.702 1.874 -0.047 23.776 Atomic orbital electron populations 1.21869 0.72963 1.04644 1.03523 1.48250 1.06441 1.00088 1.62141 1.77019 1.01800 1.06498 1.21749 1.23629 0.95359 0.92582 0.96645 1.19539 0.94754 0.95488 1.25915 1.18461 0.87996 0.87241 0.92723 1.66733 1.35907 0.99410 1.28634 1.22144 0.83609 0.88796 0.89383 1.98436 1.94521 1.05642 1.95852 1.67468 1.19840 1.15557 1.29665 1.17763 0.85161 0.86482 0.82674 1.45003 1.01365 1.10874 1.72894 1.21877 0.85042 0.90031 1.02658 1.20738 0.92655 0.97248 0.95840 1.21797 1.01626 0.98509 0.96819 1.21791 1.01624 0.98496 0.96819 1.19579 0.93692 0.93915 0.96651 1.21058 0.88218 0.95112 1.50652 0.90399 1.24999 0.95464 0.98269 0.94667 1.69902 0.97443 1.35703 1.51156 0.86861 0.77825 0.86571 0.78537 1.20353 1.21518 1.18908 0.90797 0.89139 0.88997 0.78634 0.74557 0.90969 0.90967 0.95115 0.90680 0.93248 0.93242 0.90677 0.95114 0.96249 0.96706 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.81 11.47 59.84 0.69 1.50 16 2 N -0.38 -4.37 4.05 -67.26 -0.27 -4.64 16 3 N -0.26 -2.94 12.45 30.81 0.38 -2.56 16 4 C 0.11 1.18 11.87 -17.11 -0.20 0.98 16 5 C -0.34 -4.29 6.14 -106.81 -0.66 -4.95 16 6 C 0.38 5.12 8.04 -156.24 -1.26 3.86 16 7 N -0.57 -8.04 10.43 -11.02 -0.11 -8.15 16 8 C 0.46 6.52 8.16 -91.89 -0.75 5.77 16 9 Cl 0.03 0.33 29.25 -51.86 -1.52 -1.18 16 10 N -0.59 -8.77 9.65 -10.68 -0.10 -8.87 16 11 C 0.53 7.20 7.55 -154.87 -1.17 6.03 16 12 N -0.67 -8.32 5.08 -60.09 -0.31 -8.63 16 13 C 0.13 1.86 4.62 -4.04 -0.02 1.84 16 14 C -0.06 -1.07 0.54 -154.51 -0.08 -1.15 16 15 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 16 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 17 C 0.00 -0.01 3.11 -27.88 -0.09 -0.10 16 18 C -0.51 -13.19 8.20 -34.44 -0.28 -13.47 16 19 H 0.08 2.12 5.92 -52.48 -0.31 1.81 16 20 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 21 N -0.90 -26.65 13.96 55.43 0.77 -25.87 16 22 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.20 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.42 4.30 6.03 -40.82 -0.25 4.05 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 34 H 0.07 1.37 6.62 -51.93 -0.34 1.02 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.37 6.62 -51.93 -0.34 1.02 16 38 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 39 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 40 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -30.94 351.39 -9.12 -40.06 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.27 Total: -0.22 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -3.32 Total: -1.47 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.36 Total: -58.72 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.52 Total: -1.18 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.94 -9.12 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872548118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.824 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds