Wall clock time and date at job start Tue Mar 31 2020 14:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40057 * 125.87102 * 2 1 4 4 C 1.30251 * 109.69302 * 179.78555 * 3 2 1 5 5 C 1.41175 * 108.46634 * 0.37394 * 4 3 2 6 6 C 1.36315 * 125.87308 * 180.02562 * 2 1 3 7 7 N 1.33197 * 134.60304 * 359.92595 * 6 2 1 8 8 C 1.31641 * 120.67663 * 180.02562 * 7 6 2 9 9 Cl 1.73601 * 118.69629 * 180.02562 * 8 7 6 10 10 N 1.32251 * 122.60403 * 0.04167 * 8 7 6 11 11 C 1.32835 * 121.18026 * 359.97438 * 10 8 7 12 12 N 1.38102 * 120.80198 * 180.02562 * 11 10 8 13 13 C 1.46498 * 119.99973 * 359.97438 * 12 11 10 14 14 C 1.52997 * 109.47338 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47043 * 299.99734 * 14 13 12 16 16 C 1.52998 * 109.47265 * 59.99608 * 14 13 12 17 17 C 1.53000 * 109.47295 * 179.97438 * 14 13 12 18 18 C 1.50696 * 109.47562 * 179.97438 * 17 14 13 19 19 H 1.08004 * 119.99770 * 359.97438 * 18 17 14 20 20 C 1.37880 * 120.00277 * 179.97438 * 18 17 14 21 21 N 1.31521 * 119.99762 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00068 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47201 * 89.99461 * 22 20 18 24 24 H 1.48495 * 109.47046 * 210.00107 * 22 20 18 25 25 H 1.48503 * 109.46987 * 329.99872 * 22 20 18 26 26 H 1.09003 * 109.47139 * 269.97347 * 1 2 3 27 27 H 1.09003 * 109.47503 * 29.97447 * 1 2 3 28 28 H 1.09000 * 109.47071 * 149.97277 * 1 2 3 29 29 H 1.08005 * 125.77056 * 180.27830 * 4 3 2 30 30 H 0.97004 * 120.00517 * 179.97438 * 12 11 10 31 31 H 1.09003 * 109.47137 * 299.99956 * 13 12 11 32 32 H 1.08998 * 109.47342 * 59.99396 * 13 12 11 33 33 H 1.08993 * 109.47335 * 59.99770 * 15 14 13 34 34 H 1.09001 * 109.47471 * 180.02562 * 15 14 13 35 35 H 1.09007 * 109.47040 * 300.00102 * 15 14 13 36 36 H 1.08998 * 109.47164 * 60.00657 * 16 14 13 37 37 H 1.09000 * 109.47043 * 179.97438 * 16 14 13 38 38 H 1.08993 * 109.46859 * 300.00075 * 16 14 13 39 39 H 1.09003 * 109.47275 * 299.99959 * 17 14 13 40 40 H 1.09007 * 109.47094 * 59.99710 * 17 14 13 41 41 H 0.97002 * 119.99730 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2856 1.1349 0.0000 4 6 3.5365 0.7720 0.0046 5 6 3.5929 -0.6386 -0.0009 6 6 2.2637 -1.1046 -0.0005 7 7 2.0433 -2.4182 0.0001 8 6 3.0488 -3.2679 -0.0001 9 17 2.7026 -4.9690 0.0000 10 7 4.3122 -2.8769 -0.0002 11 6 4.6332 -1.5879 -0.0006 12 7 5.9552 -1.1884 -0.0012 13 6 7.0234 -2.1909 -0.0010 14 6 8.3824 -1.4882 -0.0011 15 6 8.5042 -0.6136 -1.2507 16 6 8.5042 -0.6129 1.2478 17 6 9.4980 -2.5352 -0.0002 18 6 10.8367 -1.8431 -0.0011 19 1 10.8867 -0.7642 -0.0025 20 6 11.9975 -2.5871 0.0001 21 7 13.1657 -1.9829 -0.0011 22 14 11.9110 -4.4530 0.0019 23 1 11.8884 -4.9489 -1.3977 24 1 13.0989 -5.0029 0.7029 25 1 10.6766 -4.8906 0.7020 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5143 29 1 4.3870 1.4377 0.0100 30 1 6.1765 -0.2439 -0.0018 31 1 6.9370 -2.8137 0.8894 32 1 6.9364 -2.8148 -0.8905 33 1 7.7094 0.1323 -1.2509 34 1 9.4725 -0.1133 -1.2511 35 1 8.4174 -1.2372 -2.1405 36 1 8.4175 -1.2359 2.1380 37 1 9.4726 -0.1126 1.2479 38 1 7.7094 0.1330 1.2475 39 1 9.4112 -3.1580 0.8901 40 1 9.4115 -3.1592 -0.8899 41 1 13.9824 -2.5063 -0.0007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872548118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:06 Heat of formation + Delta-G solvation = 86.628657 kcal Electronic energy + Delta-G solvation = -24681.600439 eV Core-core repulsion = 21044.298167 eV Total energy + Delta-G solvation = -3637.302272 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.121 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.11098 -40.31384 -39.33705 -37.90258 -36.59179 -34.66437 -34.04168 -33.23533 -31.15328 -29.57263 -28.30715 -27.95320 -27.14839 -25.42830 -24.64300 -23.60917 -21.92092 -20.20457 -19.34504 -18.96579 -18.85123 -17.97252 -17.32659 -16.57125 -16.50210 -16.13384 -15.97814 -15.37566 -15.27919 -15.18368 -15.03655 -14.37281 -14.21124 -14.11844 -13.75810 -13.52069 -13.19208 -12.81914 -12.79075 -12.77165 -12.51121 -12.50639 -12.33201 -12.26114 -12.13266 -11.83670 -11.73327 -11.46218 -11.18192 -10.87808 -10.67715 -10.66882 -10.45687 -10.03635 -9.14413 -8.19417 -6.19327 -0.50369 0.17645 0.23019 1.17273 1.31407 1.39072 1.42239 1.51552 1.90958 2.42102 2.58087 2.94377 3.16751 3.32476 3.41249 3.63223 3.89097 3.96609 4.10003 4.20117 4.38822 4.40229 4.53060 4.65405 4.65959 4.75882 4.85004 4.98644 5.08986 5.13608 5.17224 5.33236 5.35750 5.41896 5.46229 5.59250 5.69427 5.73540 5.79229 5.89582 6.23438 6.41333 6.48351 6.88399 6.98302 7.43627 8.96208 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.003174 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.272494 B = 8819.046261 C =10266.649765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.381 5.381 3 N -0.267 5.267 4 C 0.121 3.879 5 C -0.342 4.342 6 C 0.359 3.641 7 N -0.580 5.580 8 C 0.447 3.553 9 Cl 0.038 6.962 10 N -0.612 5.612 11 C 0.530 3.470 12 N -0.664 5.664 13 C 0.144 3.856 14 C -0.058 4.058 15 C -0.126 4.126 16 C -0.126 4.126 17 C -0.003 4.003 18 C -0.500 4.500 19 H 0.052 0.948 20 C 0.004 3.996 21 N -0.953 5.953 22 Si 0.933 3.067 23 H -0.273 1.273 24 H -0.292 1.292 25 H -0.247 1.247 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.234 0.766 30 H 0.426 0.574 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.017 0.983 40 H 0.015 0.985 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.964 3.106 -0.043 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.170 5.170 3 N -0.082 5.082 4 C -0.074 4.074 5 C -0.360 4.360 6 C 0.112 3.888 7 N -0.312 5.312 8 C 0.148 3.852 9 Cl 0.066 6.934 10 N -0.346 5.346 11 C 0.276 3.724 12 N -0.294 5.294 13 C 0.020 3.980 14 C -0.059 4.059 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.041 4.041 18 C -0.538 4.538 19 H 0.070 0.930 20 C -0.192 4.192 21 N -0.595 5.595 22 Si 0.758 3.242 23 H -0.198 1.198 24 H -0.219 1.219 25 H -0.171 1.171 26 H 0.104 0.896 27 H 0.127 0.873 28 H 0.114 0.886 29 H 0.251 0.749 30 H 0.268 0.732 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.035 0.965 40 H 0.034 0.966 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -26.929 2.959 -0.043 27.092 hybrid contribution 1.435 -0.750 -0.005 1.619 sum -25.494 2.209 -0.047 25.590 Atomic orbital electron populations 1.22166 0.71062 1.05796 1.04692 1.48630 1.07616 0.99492 1.61216 1.77017 1.02351 1.06665 1.22118 1.24224 0.96040 0.91984 0.95173 1.19683 0.94159 0.96456 1.25749 1.18765 0.89050 0.87450 0.93504 1.66747 1.35922 0.99913 1.28628 1.22331 0.83636 0.89437 0.89781 1.98431 1.94461 1.04736 1.95801 1.67447 1.20274 1.16444 1.30455 1.17811 0.85434 0.86420 0.82710 1.44715 1.00508 1.10894 1.73249 1.21473 0.84304 0.90005 1.02224 1.20575 0.92271 0.96295 0.96746 1.21728 1.01394 0.99013 0.96182 1.21723 1.01399 0.99000 0.96180 1.19556 0.93209 0.94943 0.96357 1.21393 0.90144 0.94272 1.48011 0.92999 1.25839 0.95287 1.02877 0.95172 1.70050 0.98221 1.37385 1.53869 0.85912 0.78205 0.81264 0.78798 1.19806 1.21885 1.17081 0.89596 0.87291 0.88598 0.74948 0.73222 0.91537 0.91467 0.91206 0.93711 0.93556 0.93586 0.93701 0.91202 0.96467 0.96640 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.28 11.47 127.77 1.47 2.75 16 2 N -0.38 -7.91 4.05 -366.70 -1.48 -9.39 16 3 N -0.27 -5.37 12.45 -56.45 -0.70 -6.07 16 4 C 0.12 2.10 11.87 85.65 1.02 3.12 16 5 C -0.34 -7.80 6.14 -21.28 -0.13 -7.93 16 6 C 0.36 8.95 8.04 134.14 1.08 10.03 16 7 N -0.58 -15.47 10.43 -188.79 -1.97 -17.44 16 8 C 0.45 12.15 8.16 180.79 1.47 13.62 16 9 Cl 0.04 0.87 29.25 -2.72 -0.08 0.79 16 10 N -0.61 -17.17 9.65 -187.72 -1.81 -18.98 16 11 C 0.53 13.05 7.55 133.66 1.01 14.06 16 12 N -0.66 -14.40 5.08 -344.02 -1.75 -16.14 16 13 C 0.14 3.89 4.62 86.38 0.40 4.29 16 14 C -0.06 -1.85 0.54 -52.18 -0.03 -1.88 16 15 C -0.13 -3.78 8.05 71.98 0.58 -3.20 16 16 C -0.13 -3.78 8.05 71.98 0.58 -3.20 16 17 C 0.00 -0.12 3.11 29.85 0.09 -0.02 16 18 C -0.50 -26.11 8.20 25.60 0.21 -25.90 16 19 H 0.05 2.93 5.92 -2.91 -0.02 2.91 16 20 C 0.00 0.24 5.47 84.65 0.46 0.70 16 21 N -0.95 -57.93 13.96 21.45 0.30 -57.63 16 22 Si 0.93 43.20 27.47 68.60 1.88 45.09 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.23 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.43 7.07 6.03 -92.71 -0.56 6.51 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.53 6.86 -2.39 -0.02 1.51 16 34 H 0.04 1.62 6.62 -2.39 -0.02 1.60 16 35 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.04 1.62 6.62 -2.39 -0.02 1.61 16 38 H 0.07 1.53 6.86 -2.39 -0.02 1.51 16 39 H 0.02 0.73 7.20 -2.39 -0.02 0.71 16 40 H 0.02 0.65 7.57 -2.38 -0.02 0.63 16 41 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -68.25 351.39 3.06 -65.20 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.46 Total: 8.15 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 8.21 Total: 6.43 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -7.42 Total: -125.66 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.09 kcal Atomic # 17 Polarization: 0.87 SS G_CDS: -0.08 Total: 0.79 kcal Total: -68.25 3.06 -65.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872548118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.824 kcal (2) G-P(sol) polarization free energy of solvation -68.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds