Wall clock time and date at job start Tue Mar 31 2020 13:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50708 * 119.99849 * 2 1 4 4 C 1.52997 * 109.47139 * 124.99508 * 3 2 1 5 5 C 1.50703 * 109.47141 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.00257 * 89.99840 * 5 4 3 7 7 C 1.38230 * 119.99864 * 179.97438 * 6 5 4 8 8 C 1.38235 * 120.00326 * 0.02562 * 7 6 5 9 9 S 1.76199 * 120.00342 * 179.70391 * 8 7 6 10 10 O 1.42099 * 106.40466 * 203.54194 * 9 8 7 11 11 O 1.42098 * 106.40181 * 336.46004 * 9 8 7 12 12 N 1.65602 * 107.21888 * 89.99875 * 9 8 7 13 13 C 1.46500 * 119.99756 * 65.00258 * 12 9 8 14 14 C 1.52998 * 109.46901 * 164.99878 * 13 12 9 15 15 C 1.53002 * 109.47175 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47111 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99673 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99813 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00018 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46753 * 60.00024 * 20 18 16 22 22 H 1.48498 * 109.47149 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47095 * 300.00323 * 20 18 16 24 24 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 25 25 C 1.38234 * 119.99499 * 270.02358 * 5 4 3 26 26 H 1.07999 * 120.00442 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99793 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00599 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47091 * 4.99547 * 3 2 1 30 30 H 1.08996 * 109.46909 * 244.99609 * 3 2 1 31 31 H 1.09001 * 109.47096 * 60.00043 * 4 3 2 32 32 H 1.09005 * 109.47051 * 299.99840 * 4 3 2 33 33 H 1.08002 * 119.99744 * 359.97438 * 6 5 4 34 34 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 35 35 H 0.97000 * 119.99945 * 245.00458 * 12 9 8 36 36 H 1.09000 * 109.47104 * 284.99861 * 13 12 9 37 37 H 1.08996 * 109.47400 * 45.00315 * 13 12 9 38 38 H 1.09000 * 109.47228 * 299.99907 * 14 13 12 39 39 H 1.09003 * 109.47349 * 59.99837 * 14 13 12 40 40 H 1.09000 * 109.47117 * 300.00158 * 15 14 13 41 41 H 1.08996 * 109.47114 * 60.00445 * 15 14 13 42 42 H 0.97003 * 119.99749 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.00299 * 179.97438 * 24 8 7 44 44 H 1.07997 * 120.00459 * 359.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 6 3.7879 2.6387 1.1820 6 6 3.2838 3.7272 1.8689 7 6 3.9749 4.9244 1.8696 8 6 5.1697 5.0332 1.1831 9 16 6.0467 6.5615 1.1775 10 8 6.8639 6.5510 0.0151 11 8 5.0875 7.5755 1.4440 12 7 7.0770 6.5402 2.4738 13 6 8.1740 5.5704 2.5217 14 6 9.1777 5.9886 3.5980 15 6 10.3231 4.9754 3.6485 16 6 11.3115 5.3870 4.7091 17 1 11.1399 6.2819 5.2889 18 6 12.4351 4.6216 4.9386 19 7 12.6446 3.5327 4.2315 20 14 13.6605 5.1322 6.2528 21 1 12.9811 5.1767 7.5725 22 1 14.7722 4.1488 6.3019 23 1 14.2020 6.4765 5.9292 24 6 5.6738 3.9447 0.4962 25 6 4.9825 2.7475 0.4951 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3585 2.1317 0.0895 30 1 2.6213 1.4026 -0.9313 31 1 3.7398 0.5067 1.0922 32 1 2.4770 1.2358 2.1131 33 1 2.3501 3.6423 2.4049 34 1 3.5809 5.7751 2.4058 35 1 6.9541 7.1698 3.2014 36 1 7.7765 4.5836 2.7592 37 1 8.6727 5.5378 1.5530 38 1 9.5752 6.9753 3.3605 39 1 8.6791 6.0213 4.5668 40 1 9.9253 3.9888 3.8862 41 1 10.8219 4.9424 2.6799 42 1 13.4350 2.9941 4.3932 43 1 6.6071 4.0297 -0.0405 44 1 5.3764 1.8971 -0.0416 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881861717.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:16 Heat of formation + Delta-G solvation = -58.887820 kcal Electronic energy + Delta-G solvation = -23964.526937 eV Core-core repulsion = 20394.205895 eV Total energy + Delta-G solvation = -3570.321041 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.70826 -37.20885 -36.23975 -35.96670 -35.79275 -33.24680 -32.93731 -31.27111 -30.86472 -29.11616 -26.39500 -24.66562 -23.18931 -22.92841 -21.62988 -20.58803 -20.22136 -19.36849 -18.05769 -17.20555 -16.56932 -16.24213 -15.84654 -15.67437 -15.32869 -14.79776 -14.55481 -14.49760 -14.30602 -14.23075 -13.74267 -13.47511 -13.30952 -12.57072 -12.48495 -12.33989 -12.29090 -12.15887 -12.02262 -11.93229 -11.65835 -11.55141 -11.38954 -11.21551 -10.93387 -10.80505 -10.75472 -10.58245 -9.93223 -9.85224 -9.47592 -9.33823 -9.25716 -9.23266 -9.10636 -8.37945 -6.03253 -4.05842 0.37954 0.66395 1.10037 1.85963 3.00194 3.31802 3.33782 3.36363 3.38867 3.80209 4.22293 4.28008 4.43405 4.47416 4.63819 4.69710 4.79159 4.89042 4.94875 5.08624 5.20688 5.24349 5.32739 5.34797 5.43718 5.49879 5.54445 5.65726 5.73295 5.74045 5.86753 5.92929 5.95180 6.08471 6.19899 6.21157 6.34328 6.56197 6.62361 6.75619 6.94877 7.15295 7.61454 7.74413 7.95524 8.37367 9.00467 9.58334 11.08006 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.002534 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.255249 B =11048.512242 C =12584.058896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.090 4.090 4 C -0.084 4.084 5 C -0.030 4.030 6 C -0.141 4.141 7 C -0.016 4.016 8 C -0.678 4.678 9 S 2.694 3.306 10 O -0.957 6.957 11 O -0.968 6.968 12 N -1.113 6.113 13 C 0.113 3.887 14 C -0.116 4.116 15 C 0.022 3.978 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.014 4.014 25 C -0.138 4.138 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.417 0.583 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.143 0.857 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.210 -4.410 -7.642 24.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.127 4.127 4 C -0.121 4.121 5 C -0.030 4.030 6 C -0.160 4.160 7 C -0.035 4.035 8 C -0.764 4.764 9 S 2.784 3.216 10 O -0.947 6.947 11 O -0.958 6.958 12 N -0.874 5.874 13 C -0.012 4.012 14 C -0.155 4.155 15 C -0.016 4.016 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.034 4.034 25 C -0.157 4.157 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.128 0.872 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.252 0.748 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.160 0.840 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.155 -4.030 -8.432 24.970 hybrid contribution 0.480 -0.369 1.348 1.478 sum -22.675 -4.399 -7.084 24.160 Atomic orbital electron populations 1.23883 0.95987 1.01921 1.01301 1.22966 0.96055 0.98407 0.99753 1.20751 0.97915 0.95657 0.98369 1.20692 0.97824 0.94185 0.99425 1.20211 0.93990 0.95321 0.93525 1.21143 1.00776 0.92828 1.01263 1.20897 0.91645 0.97869 0.93138 1.31011 1.10791 1.22427 1.12219 1.01799 0.72982 0.73418 0.73422 1.93589 1.67717 1.86482 1.46952 1.93565 1.61777 1.55305 1.85181 1.55486 1.43456 1.47895 1.40577 1.21603 0.87099 0.90329 1.02209 1.21852 0.96407 1.01376 0.95861 1.19075 0.91507 0.93543 0.97512 1.21177 1.06172 1.09516 1.19175 0.92653 1.25025 0.98049 0.95027 0.96373 1.69949 1.27967 1.15092 1.40385 0.86638 0.80760 0.78327 0.82141 1.20275 1.21302 1.20218 1.21008 0.98383 0.91184 0.92778 1.21194 0.95403 0.98211 1.00880 0.88581 0.88469 0.87209 0.91178 0.90558 0.90123 0.90308 0.85226 0.84307 0.74787 0.92152 0.90492 0.92332 0.92584 0.96336 0.96154 0.92897 0.83953 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.13 14.32 29.02 0.42 -0.72 16 2 C -0.15 -0.94 9.52 -36.02 -0.34 -1.28 16 3 C -0.09 -0.58 5.64 -27.88 -0.16 -0.73 16 4 C -0.08 -0.58 5.33 -27.88 -0.15 -0.72 16 5 C -0.03 -0.28 5.13 -104.62 -0.54 -0.82 16 6 C -0.14 -1.35 9.70 -39.59 -0.38 -1.73 16 7 C -0.02 -0.18 9.52 -39.59 -0.38 -0.56 16 8 C -0.68 -8.34 5.95 -39.58 -0.24 -8.57 16 9 S 2.69 36.91 5.74 -107.50 -0.62 36.29 16 10 O -0.96 -15.82 16.75 -57.17 -0.96 -16.77 16 11 O -0.97 -14.78 17.28 -57.17 -0.99 -15.77 16 12 N -1.11 -14.88 6.00 -10.62 -0.06 -14.94 16 13 C 0.11 1.78 6.22 -4.04 -0.03 1.76 16 14 C -0.12 -2.21 5.29 -26.73 -0.14 -2.35 16 15 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 16 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 20 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.01 -0.17 9.52 -39.58 -0.38 -0.55 16 25 C -0.14 -1.39 9.70 -39.58 -0.38 -1.77 16 26 H 0.10 0.53 7.84 -52.49 -0.41 0.11 16 27 H 0.10 0.48 8.06 -52.49 -0.42 0.05 16 28 H 0.11 0.59 8.06 -52.48 -0.42 0.17 16 29 H 0.07 0.46 7.79 -51.93 -0.40 0.05 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.14 1.33 7.62 -52.49 -0.40 0.93 16 35 H 0.42 4.85 8.65 -34.47 -0.30 4.55 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.24 7.75 -51.93 -0.40 0.84 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.14 1.59 7.62 -52.49 -0.40 1.19 16 44 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -33.72 385.88 -11.27 -44.99 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.93 Total: 0.58 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: -3.24 Total: -30.87 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.67 Total: -40.60 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -1.95 Total: -32.55 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 36.91 SS G_CDS: -0.62 Total: 36.29 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.72 -11.27 -44.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881861717.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.902 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds