Wall clock time and date at job start Tue Mar 31 2020 13:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50708 * 119.99849 * 2 1 4 4 C 1.52997 * 109.47139 * 124.99508 * 3 2 1 5 5 C 1.50703 * 109.47141 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.00257 * 89.99840 * 5 4 3 7 7 C 1.38230 * 119.99864 * 179.97438 * 6 5 4 8 8 C 1.38235 * 120.00326 * 0.02562 * 7 6 5 9 9 S 1.76199 * 120.00342 * 179.70391 * 8 7 6 10 10 O 1.42099 * 106.40466 * 203.54194 * 9 8 7 11 11 O 1.42098 * 106.40181 * 336.46004 * 9 8 7 12 12 N 1.65602 * 107.21888 * 89.99875 * 9 8 7 13 13 C 1.46500 * 119.99756 * 65.00258 * 12 9 8 14 14 C 1.52998 * 109.46901 * 164.99878 * 13 12 9 15 15 C 1.53002 * 109.47175 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47111 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99673 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99813 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00018 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46753 * 60.00024 * 20 18 16 22 22 H 1.48498 * 109.47149 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47095 * 300.00323 * 20 18 16 24 24 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 25 25 C 1.38234 * 119.99499 * 270.02358 * 5 4 3 26 26 H 1.07999 * 120.00442 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99793 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00599 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47091 * 4.99547 * 3 2 1 30 30 H 1.08996 * 109.46909 * 244.99609 * 3 2 1 31 31 H 1.09001 * 109.47096 * 60.00043 * 4 3 2 32 32 H 1.09005 * 109.47051 * 299.99840 * 4 3 2 33 33 H 1.08002 * 119.99744 * 359.97438 * 6 5 4 34 34 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 35 35 H 0.97000 * 119.99945 * 245.00458 * 12 9 8 36 36 H 1.09000 * 109.47104 * 284.99861 * 13 12 9 37 37 H 1.08996 * 109.47400 * 45.00315 * 13 12 9 38 38 H 1.09000 * 109.47228 * 299.99907 * 14 13 12 39 39 H 1.09003 * 109.47349 * 59.99837 * 14 13 12 40 40 H 1.09000 * 109.47117 * 300.00158 * 15 14 13 41 41 H 1.08996 * 109.47114 * 60.00445 * 15 14 13 42 42 H 0.97003 * 119.99749 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.00299 * 179.97438 * 24 8 7 44 44 H 1.07997 * 120.00459 * 359.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 6 3.7879 2.6387 1.1820 6 6 3.2838 3.7272 1.8689 7 6 3.9749 4.9244 1.8696 8 6 5.1697 5.0332 1.1831 9 16 6.0467 6.5615 1.1775 10 8 6.8639 6.5510 0.0151 11 8 5.0875 7.5755 1.4440 12 7 7.0770 6.5402 2.4738 13 6 8.1740 5.5704 2.5217 14 6 9.1777 5.9886 3.5980 15 6 10.3231 4.9754 3.6485 16 6 11.3115 5.3870 4.7091 17 1 11.1399 6.2819 5.2889 18 6 12.4351 4.6216 4.9386 19 7 12.6446 3.5327 4.2315 20 14 13.6605 5.1322 6.2528 21 1 12.9811 5.1767 7.5725 22 1 14.7722 4.1488 6.3019 23 1 14.2020 6.4765 5.9292 24 6 5.6738 3.9447 0.4962 25 6 4.9825 2.7475 0.4951 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3585 2.1317 0.0895 30 1 2.6213 1.4026 -0.9313 31 1 3.7398 0.5067 1.0922 32 1 2.4770 1.2358 2.1131 33 1 2.3501 3.6423 2.4049 34 1 3.5809 5.7751 2.4058 35 1 6.9541 7.1698 3.2014 36 1 7.7765 4.5836 2.7592 37 1 8.6727 5.5378 1.5530 38 1 9.5752 6.9753 3.3605 39 1 8.6791 6.0213 4.5668 40 1 9.9253 3.9888 3.8862 41 1 10.8219 4.9424 2.6799 42 1 13.4350 2.9941 4.3932 43 1 6.6071 4.0297 -0.0405 44 1 5.3764 1.8971 -0.0416 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881861717.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:16 Heat of formation + Delta-G solvation = -79.499127 kcal Electronic energy + Delta-G solvation = -23965.420710 eV Core-core repulsion = 20394.205895 eV Total energy + Delta-G solvation = -3571.214815 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47098 -38.40509 -37.38781 -37.01022 -36.74799 -35.16063 -33.57966 -32.63132 -32.06301 -29.74823 -28.20076 -25.30429 -24.78640 -23.89362 -22.39752 -22.17487 -20.65869 -20.47632 -19.07412 -18.56068 -18.30450 -17.29256 -16.68346 -16.53914 -16.43825 -16.08091 -16.03385 -15.59091 -15.38900 -14.86614 -14.49247 -14.30413 -14.16461 -14.05974 -13.95339 -13.74834 -13.28130 -13.21631 -13.17513 -13.08499 -12.95470 -12.75688 -12.52414 -12.34918 -12.32345 -12.03492 -11.80229 -11.71241 -11.57116 -11.38666 -11.15454 -10.52179 -10.46035 -10.37756 -10.04954 -10.00744 -8.17612 -6.27755 -0.66455 -0.22854 0.30090 1.41892 1.42458 1.44803 1.52547 1.96227 2.42920 2.45137 2.75891 3.16080 3.28352 3.63079 3.74436 3.92507 4.04631 4.08071 4.24043 4.27389 4.32060 4.33866 4.42556 4.49836 4.54717 4.65451 4.69241 4.82605 4.86855 4.99018 5.01244 5.07578 5.08630 5.17556 5.20155 5.23708 5.24638 5.48699 5.55517 5.77147 5.77297 5.85431 5.88197 5.90588 6.07473 6.27237 6.89000 7.41043 8.93857 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.002534 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.255249 B =11048.512242 C =12584.058896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C -0.087 4.087 4 C -0.080 4.080 5 C -0.027 4.027 6 C -0.142 4.142 7 C -0.028 4.028 8 C -0.687 4.687 9 S 2.712 3.288 10 O -0.990 6.990 11 O -0.984 6.984 12 N -1.107 6.107 13 C 0.122 3.878 14 C -0.105 4.105 15 C 0.022 3.978 16 C -0.543 4.543 17 H 0.062 0.938 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.963 3.037 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.269 1.269 24 C -0.034 4.034 25 C -0.144 4.144 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.426 0.574 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.001 0.999 41 H -0.004 1.004 42 H 0.263 0.737 43 H 0.140 0.860 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.562 -4.810 -6.627 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.179 4.179 3 C -0.124 4.124 4 C -0.117 4.117 5 C -0.027 4.027 6 C -0.161 4.161 7 C -0.047 4.047 8 C -0.777 4.777 9 S 2.805 3.195 10 O -0.980 6.980 11 O -0.974 6.974 12 N -0.869 5.869 13 C -0.004 4.004 14 C -0.144 4.144 15 C -0.016 4.016 16 C -0.581 4.581 17 H 0.080 0.920 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.787 3.213 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.054 4.054 25 C -0.163 4.163 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.134 0.866 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.174 0.826 34 H 0.168 0.832 35 H 0.263 0.737 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.072 0.928 43 H 0.158 0.842 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -24.505 -4.380 -7.409 25.972 hybrid contribution 0.808 -0.317 0.999 1.323 sum -23.697 -4.697 -6.410 24.993 Atomic orbital electron populations 1.24033 0.96081 1.02475 1.00807 1.23025 0.96212 0.98476 1.00178 1.20711 0.97760 0.95909 0.98023 1.20722 0.97902 0.93017 1.00062 1.20542 0.93569 0.96295 0.92314 1.21493 1.01481 0.92156 1.00959 1.21154 0.91337 0.99050 0.93147 1.30654 1.11570 1.21444 1.14013 1.01000 0.72421 0.73580 0.72548 1.93544 1.68763 1.87243 1.48471 1.93537 1.61947 1.56626 1.85288 1.55254 1.42962 1.47817 1.40848 1.21336 0.87050 0.91257 1.00720 1.21625 0.95395 0.99653 0.97704 1.18989 0.92883 0.94251 0.95503 1.21671 1.06946 1.09692 1.19757 0.92023 1.25953 1.00207 0.95027 0.98712 1.70080 1.28720 1.16286 1.42108 0.85538 0.78170 0.78088 0.79461 1.19140 1.21038 1.19405 1.21152 0.98883 0.91934 0.93389 1.21478 0.95679 0.98136 1.00977 0.88405 0.87673 0.86558 0.91286 0.90840 0.89319 0.89337 0.82592 0.83231 0.73701 0.91028 0.91134 0.92213 0.91394 0.98108 0.98583 0.92818 0.84250 0.83094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.94 14.32 67.79 0.97 -0.97 16 2 C -0.16 -1.65 9.52 25.65 0.24 -1.40 16 3 C -0.09 -0.94 5.64 29.85 0.17 -0.77 16 4 C -0.08 -0.90 5.33 29.85 0.16 -0.74 16 5 C -0.03 -0.44 5.13 -19.87 -0.10 -0.54 16 6 C -0.14 -2.39 9.70 22.27 0.22 -2.18 16 7 C -0.03 -0.57 9.52 22.27 0.21 -0.36 16 8 C -0.69 -16.55 5.95 22.27 0.13 -16.41 16 9 S 2.71 74.12 5.74 -56.49 -0.32 73.80 16 10 O -0.99 -33.32 16.75 -128.00 -2.14 -35.47 16 11 O -0.98 -29.65 17.28 -128.00 -2.21 -31.86 16 12 N -1.11 -29.01 6.00 -187.50 -1.12 -30.13 16 13 C 0.12 3.84 6.22 86.38 0.54 4.38 16 14 C -0.10 -3.97 5.29 30.59 0.16 -3.81 16 15 C 0.02 1.09 4.97 29.85 0.15 1.24 16 16 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 18 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 19 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 20 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 C -0.03 -0.79 9.52 22.27 0.21 -0.58 16 25 C -0.14 -2.71 9.70 22.27 0.22 -2.50 16 26 H 0.10 0.90 7.84 -2.91 -0.02 0.88 16 27 H 0.10 0.84 8.06 -2.91 -0.02 0.82 16 28 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 29 H 0.07 0.76 7.79 -2.39 -0.02 0.74 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.89 8.09 -2.39 -0.02 0.87 16 32 H 0.09 0.86 8.09 -2.38 -0.02 0.84 16 33 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.15 2.65 7.62 -2.91 -0.02 2.63 16 35 H 0.43 9.48 8.65 -96.74 -0.84 8.65 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.07 2.31 7.75 -2.39 -0.02 2.30 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.26 14.86 8.31 -92.71 -0.77 14.08 16 43 H 0.14 3.20 7.62 -2.91 -0.02 3.17 16 44 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -71.75 385.88 0.62 -71.14 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.14 Total: 16.41 kcal Atomic # 6 Polarization: -58.03 SS G_CDS: 3.97 Total: -54.06 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -0.84 Total: -85.60 kcal Atomic # 8 Polarization: -62.97 SS G_CDS: -4.36 Total: -67.33 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 74.12 SS G_CDS: -0.32 Total: 73.80 kcal Total: -71.75 0.62 -71.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881861717.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.364 kcal (2) G-P(sol) polarization free energy of solvation -71.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds