Wall clock time and date at job start Tue Mar 31 2020 13:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47309 * 2 1 4 4 N 1.46499 * 109.47080 * 120.00071 * 2 1 3 5 5 S 1.65601 * 120.00169 * 307.41770 * 4 2 1 6 6 O 1.42096 * 106.40326 * 312.87630 * 5 4 2 7 7 O 1.42098 * 106.40306 * 179.97438 * 5 4 2 8 8 C 1.76201 * 107.21441 * 66.41338 * 5 4 2 9 9 C 1.38237 * 120.00310 * 71.55948 * 8 5 4 10 10 C 1.38234 * 120.00522 * 179.97438 * 9 8 5 11 11 C 1.38238 * 119.99428 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99446 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47014 * 89.99970 * 12 11 10 14 14 H 1.07998 * 119.99745 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99778 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99962 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99821 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47288 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47160 * 120.00189 * 17 15 13 20 20 H 1.48504 * 109.47391 * 239.99779 * 17 15 13 21 21 C 1.38230 * 120.00429 * 0.25434 * 11 10 9 22 22 C 1.38233 * 120.00148 * 251.53048 * 8 5 4 23 23 C 1.53000 * 109.47213 * 240.00022 * 2 1 3 24 24 C 1.52997 * 117.50202 * 123.74921 * 23 2 1 25 25 C 1.52995 * 117.50012 * 55.08429 * 23 2 1 26 26 H 1.09002 * 109.46861 * 309.98270 * 1 2 3 27 27 H 1.08999 * 109.46991 * 69.98282 * 1 2 3 28 28 H 1.08999 * 109.47124 * 189.98699 * 1 2 3 29 29 H 1.09004 * 109.47136 * 171.88268 * 3 2 1 30 30 H 1.09002 * 109.47355 * 291.88363 * 3 2 1 31 31 H 1.09002 * 109.47334 * 51.88690 * 3 2 1 32 32 H 0.97003 * 120.00283 * 127.42068 * 4 2 1 33 33 H 1.08007 * 119.99698 * 359.97438 * 9 8 5 34 34 H 1.07995 * 119.99937 * 179.97438 * 10 9 8 35 35 H 1.08993 * 109.46589 * 209.99774 * 12 11 10 36 36 H 1.09002 * 109.47046 * 329.99714 * 12 11 10 37 37 H 0.97003 * 119.99700 * 180.02562 * 16 15 13 38 38 H 1.07994 * 119.99823 * 179.72811 * 21 11 10 39 39 H 1.08002 * 119.99740 * 0.02562 * 22 8 5 40 40 H 1.09005 * 115.54894 * 269.42037 * 23 2 1 41 41 H 1.09000 * 117.49567 * 359.97438 * 24 23 2 42 42 H 1.08998 * 117.50126 * 145.02334 * 24 23 2 43 43 H 1.09001 * 117.50373 * 214.98181 * 25 23 2 44 44 H 1.09005 * 117.49858 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 1.4728 -0.2398 2.6933 6 8 1.5552 1.1780 2.7403 7 8 2.1241 -1.0873 3.6297 8 6 -0.2413 -0.6412 2.7664 9 6 -0.6390 -1.9628 2.8456 10 6 -1.9838 -2.2777 2.9034 11 6 -2.9308 -1.2710 2.8826 12 6 -4.3969 -1.6144 2.9451 13 6 -4.8417 -1.6582 4.3843 14 1 -4.1335 -1.4578 5.1746 15 6 -6.1527 -1.9540 4.6920 16 7 -7.0150 -2.1984 3.7294 17 14 -6.7038 -2.0090 6.4759 18 1 -5.5513 -1.6999 7.3599 19 1 -7.7770 -1.0059 6.6936 20 1 -7.2217 -3.3643 6.7926 21 6 -2.5334 0.0503 2.7986 22 6 -1.1885 0.3654 2.7451 23 6 2.0400 -0.7212 -1.2492 24 6 2.9864 0.0486 -2.1726 25 6 1.5432 -0.2200 -2.6067 26 1 -0.3633 0.6604 0.7875 27 1 -0.3633 0.3518 -0.9656 28 1 -0.3633 -1.0121 0.1782 29 1 3.1204 1.4458 0.1451 30 1 1.8001 1.9127 -0.9536 31 1 1.5632 1.9965 0.8086 32 1 2.6613 -1.4120 1.1113 33 1 0.1010 -2.7493 2.8623 34 1 -2.2944 -3.3102 2.9649 35 1 -4.9704 -0.8572 2.4104 36 1 -4.5620 -2.5881 2.4839 37 1 -7.9375 -2.4062 3.9459 38 1 -3.2735 0.8365 2.7779 39 1 -0.8778 1.3979 2.6832 40 1 2.2061 -1.7929 -1.1385 41 1 3.2453 1.0691 -1.8903 42 1 3.7748 -0.5165 -2.6697 43 1 1.3828 -0.9617 -3.3892 44 1 0.8533 0.6239 -2.6098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885031134.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:09 Heat of formation + Delta-G solvation = -30.949327 kcal Electronic energy + Delta-G solvation = -25714.441331 eV Core-core repulsion = 22145.331794 eV Total energy + Delta-G solvation = -3569.109537 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.51608 -38.80743 -37.10336 -35.74696 -34.94209 -33.70121 -31.63337 -30.72127 -30.17021 -27.74924 -27.19321 -24.10057 -23.68358 -22.49995 -22.33350 -20.89121 -19.67732 -19.15430 -17.80508 -17.57663 -16.65903 -16.44969 -15.56287 -15.15651 -14.85514 -14.71441 -14.37940 -14.32879 -13.96962 -13.62960 -13.20430 -13.11883 -12.90804 -12.75627 -12.54443 -12.09829 -11.99216 -11.91248 -11.79683 -11.69534 -11.49550 -11.48842 -11.32632 -10.95186 -10.93327 -10.83578 -10.60853 -10.52980 -10.47619 -10.39512 -9.74157 -9.67648 -9.53266 -8.56698 -8.53259 -8.33551 -6.17850 -4.22672 0.54183 1.33899 1.79157 3.02101 3.22706 3.30865 3.36195 3.51008 3.78102 4.10417 4.28348 4.36998 4.55179 4.58978 4.70020 4.75261 4.82113 5.09996 5.16018 5.20423 5.24731 5.26740 5.36422 5.50130 5.58847 5.71346 5.72396 5.76387 5.79341 5.84258 5.87189 5.91615 6.04012 6.21581 6.24985 6.30262 6.32959 6.51483 6.83823 6.88509 6.91810 7.29107 7.43091 7.59011 7.77611 8.12908 8.82515 9.42443 10.92188 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020776 B = 0.003240 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.366923 B = 8640.405870 C = 9338.862772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.213 3.787 3 C -0.181 4.181 4 N -1.110 6.110 5 S 2.698 3.302 6 O -0.963 6.963 7 O -0.969 6.969 8 C -0.699 4.699 9 C -0.021 4.021 10 C -0.145 4.145 11 C 0.027 3.973 12 C 0.039 3.961 13 C -0.517 4.517 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.144 4.144 22 C -0.024 4.024 23 C -0.151 4.151 24 C -0.183 4.183 25 C -0.172 4.172 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.415 0.585 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.263 0.737 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.096 3.865 -12.320 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.125 3.875 3 C -0.240 4.240 4 N -0.868 5.868 5 S 2.791 3.209 6 O -0.953 6.953 7 O -0.959 6.959 8 C -0.788 4.788 9 C -0.041 4.041 10 C -0.164 4.164 11 C 0.026 3.974 12 C 0.002 3.998 13 C -0.555 4.555 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.725 3.275 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.163 4.163 22 C -0.044 4.044 23 C -0.171 4.171 24 C -0.220 4.220 25 C -0.209 4.209 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.249 0.751 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 18.298 4.356 -11.664 22.132 hybrid contribution -0.889 -0.847 0.653 1.391 sum 17.409 3.508 -11.011 20.895 Atomic orbital electron populations 1.22788 0.93489 1.04109 1.04142 1.19560 0.93532 0.91392 0.83018 1.22706 1.02470 0.95117 1.03677 1.55704 1.58190 1.50223 1.22683 1.01540 0.73922 0.73651 0.71813 1.93519 1.86633 1.29399 1.85760 1.93577 1.74450 1.68684 1.59197 1.30320 1.23735 1.01286 1.23485 1.20642 0.96777 0.93540 0.93126 1.21205 0.92121 1.00111 1.02979 1.21081 0.99008 0.92436 0.84839 1.18537 0.84778 0.98207 0.98233 1.21015 0.94892 1.48598 0.90950 0.92234 1.25004 0.96559 0.94891 0.97717 1.69959 1.04042 1.47165 1.31822 0.86432 0.78763 0.77777 0.84500 1.19560 1.20807 1.20811 1.21228 0.95166 0.97013 1.02936 1.20758 0.92938 0.97749 0.92920 1.22435 1.04833 0.99406 0.90409 1.23229 0.93324 1.02192 1.03265 1.23006 0.97428 1.03616 0.96874 0.90817 0.90526 0.90771 0.91741 0.91521 0.89159 0.75070 0.85933 0.85499 0.94739 0.94779 0.92699 0.85411 0.84893 0.87178 0.87778 0.88964 0.88604 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 6.97 37.16 0.26 -1.71 16 2 C 0.21 2.02 1.00 -131.82 -0.13 1.89 16 3 C -0.18 -1.73 6.75 37.15 0.25 -1.48 16 4 N -1.11 -11.23 5.54 0.54 0.00 -11.22 16 5 S 2.70 37.21 5.39 -107.50 -0.58 36.63 16 6 O -0.96 -14.70 14.10 -57.18 -0.81 -15.50 16 7 O -0.97 -16.10 17.84 -57.18 -1.02 -17.12 16 8 C -0.70 -10.66 3.73 -39.58 -0.15 -10.81 16 9 C -0.02 -0.34 9.46 -39.58 -0.37 -0.71 16 10 C -0.15 -2.63 9.70 -39.58 -0.38 -3.01 16 11 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 12 C 0.04 0.95 5.11 -29.03 -0.15 0.80 16 13 C -0.52 -13.94 9.09 -34.44 -0.31 -14.25 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 17 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.14 -2.61 9.70 -39.58 -0.38 -2.99 16 22 C -0.02 -0.38 7.14 -39.58 -0.28 -0.67 16 23 C -0.15 -1.17 5.32 -90.62 -0.48 -1.65 16 24 C -0.18 -1.23 9.54 -26.69 -0.25 -1.49 16 25 C -0.17 -1.18 9.24 -26.69 -0.25 -1.43 16 26 H 0.07 0.85 4.49 -51.93 -0.23 0.61 16 27 H 0.08 0.69 6.66 -51.93 -0.35 0.34 16 28 H 0.07 0.83 7.53 -51.93 -0.39 0.44 16 29 H 0.06 0.59 7.74 -51.93 -0.40 0.19 16 30 H 0.07 0.52 6.56 -51.93 -0.34 0.18 16 31 H 0.09 1.03 5.91 -51.93 -0.31 0.72 16 32 H 0.42 3.30 8.58 -34.47 -0.30 3.00 16 33 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 35 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 39 H 0.13 1.85 7.21 -52.49 -0.38 1.47 16 40 H 0.11 0.79 8.09 -51.93 -0.42 0.37 16 41 H 0.10 0.69 5.84 -51.93 -0.30 0.38 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.67 7.02 -51.93 -0.36 0.30 16 LS Contribution 358.60 15.07 5.40 5.40 Total: -1.00 -31.90 358.60 -10.83 -42.72 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.28 Total: 3.67 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: -3.27 Total: -35.95 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.74 Total: -35.92 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -1.83 Total: -32.62 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 37.21 SS G_CDS: -0.58 Total: 36.63 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.90 -10.83 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885031134.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.773 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds