Wall clock time and date at job start Tue Mar 31 2020 13:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46746 * 2 1 4 4 C 1.52999 * 115.54993 * 296.05794 * 3 2 1 5 5 N 1.46498 * 109.47596 * 279.41689 * 4 3 2 6 6 S 1.65600 * 120.00451 * 165.00110 * 5 4 3 7 7 O 1.42099 * 106.39871 * 311.46257 * 6 5 4 8 8 O 1.42098 * 106.40490 * 178.54251 * 6 5 4 9 9 C 1.76204 * 107.21520 * 65.00031 * 6 5 4 10 10 C 1.38239 * 119.99552 * 90.00315 * 9 6 5 11 11 C 1.38237 * 119.99640 * 179.72247 * 10 9 6 12 12 C 1.38235 * 119.99867 * 0.28100 * 11 10 9 13 13 C 1.50699 * 119.99881 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47191 * 89.99818 * 13 12 11 15 15 H 1.08002 * 119.99472 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00040 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99949 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99760 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47478 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47111 * 120.00109 * 18 16 14 21 21 H 1.48506 * 109.47121 * 240.00179 * 18 16 14 22 22 C 1.38236 * 120.00297 * 359.95019 * 12 11 10 23 23 C 1.38236 * 120.00015 * 270.19378 * 9 6 5 24 24 C 1.53002 * 117.52196 * 81.76376 * 3 2 1 25 25 C 1.52998 * 117.49692 * 150.39532 * 3 2 1 26 26 H 1.08999 * 109.47211 * 64.79422 * 1 2 3 27 27 H 1.09002 * 109.47054 * 184.78922 * 1 2 3 28 28 H 1.08999 * 109.47766 * 304.79502 * 1 2 3 29 29 H 1.08999 * 109.47368 * 239.99978 * 2 1 3 30 30 H 1.08999 * 109.47124 * 119.99380 * 2 1 3 31 31 H 1.09002 * 109.46985 * 159.41382 * 4 3 2 32 32 H 1.09003 * 109.47051 * 39.41865 * 4 3 2 33 33 H 0.97009 * 119.99753 * 345.00526 * 5 4 3 34 34 H 1.07997 * 120.00394 * 0.02562 * 10 9 6 35 35 H 1.07996 * 120.00042 * 180.25189 * 11 10 9 36 36 H 1.09005 * 109.47061 * 209.99453 * 13 12 11 37 37 H 1.08998 * 109.47500 * 329.99706 * 13 12 11 38 38 H 0.96990 * 119.99533 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.00102 * 180.02562 * 22 12 11 40 40 H 1.08003 * 120.00118 * 0.02562 * 23 9 6 41 41 H 1.09000 * 117.50041 * 214.96761 * 24 3 2 42 42 H 1.08996 * 117.49532 * 359.97438 * 24 3 2 43 43 H 1.09004 * 117.50200 * 359.96897 * 25 3 2 44 44 H 1.09000 * 117.50191 * 144.99396 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6881 2.2668 -1.2401 5 7 2.6215 1.9440 -2.3220 6 16 2.2723 2.3909 -3.8779 7 8 0.9344 1.9795 -4.1227 8 8 3.3725 1.9703 -4.6728 9 6 2.2680 4.1522 -3.9261 10 6 3.4342 4.8387 -4.2085 11 6 3.4296 6.2204 -4.2519 12 6 2.2601 6.9157 -4.0073 13 6 2.2552 8.4219 -4.0542 14 6 1.9378 8.8800 -5.4544 15 1 1.7581 8.1530 -6.2326 16 6 1.8769 10.2271 -5.7419 17 7 2.0963 11.1123 -4.7943 18 14 1.4842 10.7948 -7.4776 19 1 1.2822 9.6114 -8.3517 20 1 0.2471 11.6160 -7.4618 21 1 2.6117 11.6082 -7.9995 22 6 1.0950 6.2293 -3.7202 23 6 1.0994 4.8476 -3.6777 24 6 2.0922 2.1739 1.3429 25 6 3.3878 1.7153 0.6704 26 1 -0.3633 0.4376 -0.9298 27 1 -0.3633 -1.0241 0.0858 28 1 -0.3634 0.5864 0.8439 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.7596 3.3283 -1.0030 32 1 0.6713 2.0327 -1.5555 33 1 3.4443 1.4684 -2.1271 34 1 4.3478 4.2955 -4.3999 35 1 4.3397 6.7566 -4.4765 36 1 1.5005 8.8044 -3.3669 37 1 3.2359 8.7978 -3.7625 38 1 2.0538 12.0599 -4.9967 39 1 0.1813 6.7726 -3.5296 40 1 0.1891 4.3114 -3.4536 41 1 1.8760 3.2422 1.3429 42 1 1.7629 1.6275 2.2266 43 1 3.9111 0.8671 1.1120 44 1 4.0240 2.4819 0.2282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885046860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:43 Heat of formation + Delta-G solvation = -48.402925 kcal Electronic energy + Delta-G solvation = -24878.247662 eV Core-core repulsion = 21308.381280 eV Total energy + Delta-G solvation = -3569.866382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.12479 -38.80395 -37.11705 -35.75452 -34.30007 -33.68281 -32.17529 -31.56518 -30.58625 -27.43976 -26.59522 -24.16230 -23.73151 -22.59218 -22.35365 -20.90741 -19.59559 -19.24996 -17.83472 -17.24176 -16.47419 -16.38403 -15.64801 -15.47407 -15.08231 -14.87405 -14.37633 -14.29885 -13.98559 -13.81171 -13.34077 -13.17247 -13.11440 -12.82677 -12.48216 -12.26601 -12.16638 -12.01244 -11.92260 -11.76461 -11.70519 -11.50023 -11.46234 -11.05668 -10.95296 -10.93724 -10.55683 -10.50076 -10.41822 -10.13183 -9.79274 -9.68333 -9.53416 -8.60139 -8.55210 -8.39308 -6.18376 -4.23283 0.51295 1.32029 1.78408 3.00705 3.22523 3.30611 3.35974 3.50494 3.76796 4.11178 4.25312 4.36124 4.37486 4.50397 4.55673 4.65238 5.07445 5.13553 5.15999 5.20230 5.22126 5.23556 5.29264 5.36333 5.45808 5.60808 5.67444 5.71206 5.72745 5.82501 5.84756 5.86304 5.90242 5.92927 6.06783 6.24009 6.32089 6.49858 6.82554 6.84797 6.90148 7.28094 7.42045 7.57711 7.77052 8.12099 8.81840 9.41855 10.91735 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.002880 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.119798 B = 9720.036453 C =10263.012985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 C -0.134 4.134 4 C 0.153 3.847 5 N -1.117 6.117 6 S 2.698 3.302 7 O -0.965 6.965 8 O -0.967 6.967 9 C -0.704 4.704 10 C -0.022 4.022 11 C -0.146 4.146 12 C 0.027 3.973 13 C 0.039 3.961 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.145 4.145 23 C -0.025 4.025 24 C -0.164 4.164 25 C -0.172 4.172 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.416 0.584 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 -19.876 12.566 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.123 4.123 3 C -0.136 4.136 4 C 0.027 3.973 5 N -0.876 5.876 6 S 2.791 3.209 7 O -0.955 6.955 8 O -0.957 6.957 9 C -0.793 4.793 10 C -0.041 4.041 11 C -0.165 4.165 12 C 0.026 3.974 13 C 0.002 3.998 14 C -0.555 4.555 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.164 4.164 23 C -0.045 4.045 24 C -0.202 4.202 25 C -0.209 4.209 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.251 0.749 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.187 -20.170 11.856 23.397 hybrid contribution 0.264 1.094 -0.567 1.260 sum 0.451 -19.075 11.289 22.170 Atomic orbital electron populations 1.21789 0.95285 1.01661 1.02476 1.21043 0.96215 0.92905 1.02120 1.21638 1.01799 0.96799 0.93346 1.20817 0.93015 0.98109 0.85393 1.55549 1.32914 1.73517 1.25586 1.01542 0.73417 0.74043 0.71925 1.93554 1.37308 1.81092 1.83498 1.93566 1.54316 1.81656 1.66163 1.30331 1.01057 1.25142 1.22786 1.20771 0.95705 0.94933 0.92730 1.21249 0.99226 0.93374 1.02620 1.21116 0.91705 0.99479 0.85083 1.18545 0.98988 0.83914 0.98335 1.21015 1.48866 0.91752 0.93858 0.92226 1.25007 0.94953 0.96639 0.97570 1.69956 1.49006 1.01532 1.32495 0.86424 0.78081 0.78825 0.84102 1.19553 1.20785 1.20796 1.21244 0.98936 0.93418 1.02830 1.20786 0.95446 0.94912 0.93338 1.23056 1.01326 1.00833 0.94954 1.23056 0.90555 1.03630 1.03704 0.92029 0.92703 0.92493 0.91300 0.91841 0.91321 0.89549 0.74940 0.85279 0.85364 0.94712 0.94727 0.92679 0.85347 0.85290 0.88331 0.88534 0.88632 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.66 37.16 0.36 -0.74 16 2 C -0.09 -0.60 5.82 -26.73 -0.16 -0.76 16 3 C -0.13 -1.00 1.60 -154.51 -0.25 -1.25 16 4 C 0.15 1.38 6.08 -4.04 -0.02 1.36 16 5 N -1.12 -10.97 5.97 -10.61 -0.06 -11.04 16 6 S 2.70 36.88 5.74 -107.50 -0.62 36.26 16 7 O -0.96 -15.34 16.76 -57.17 -0.96 -16.30 16 8 O -0.97 -15.54 17.28 -57.17 -0.99 -16.53 16 9 C -0.70 -10.95 5.95 -39.58 -0.24 -11.19 16 10 C -0.02 -0.36 9.52 -39.58 -0.38 -0.73 16 11 C -0.15 -2.70 9.70 -39.58 -0.38 -3.08 16 12 C 0.03 0.55 5.07 -104.62 -0.53 0.01 16 13 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 14 C -0.52 -14.01 9.09 -34.44 -0.31 -14.32 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.48 13.29 55.43 0.74 -24.75 16 18 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.15 -2.67 9.70 -39.58 -0.38 -3.05 16 23 C -0.03 -0.41 9.52 -39.58 -0.38 -0.78 16 24 C -0.16 -1.11 9.90 -26.73 -0.26 -1.37 16 25 C -0.17 -1.17 9.70 -26.73 -0.26 -1.43 16 26 H 0.06 0.50 6.90 -51.93 -0.36 0.14 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.07 0.61 7.94 -51.93 -0.41 0.20 16 32 H 0.09 0.80 6.24 -51.93 -0.32 0.48 16 33 H 0.42 3.32 8.47 -34.47 -0.29 3.03 16 34 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 35 H 0.13 2.26 8.06 -52.49 -0.42 1.83 16 36 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.13 1.76 7.62 -52.48 -0.40 1.36 16 41 H 0.10 0.68 8.08 -51.93 -0.42 0.26 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -32.40 379.94 -11.41 -43.81 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.79 Total: 1.69 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: -3.44 Total: -34.97 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.67 Total: -35.79 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -1.95 Total: -32.83 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 36.88 SS G_CDS: -0.62 Total: 36.26 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.40 -11.41 -43.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885046860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.591 kcal (2) G-P(sol) polarization free energy of solvation -32.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds