Wall clock time and date at job start Tue Mar 31 2020 13:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46746 * 2 1 4 4 C 1.52999 * 115.54993 * 296.05794 * 3 2 1 5 5 N 1.46498 * 109.47596 * 279.41689 * 4 3 2 6 6 S 1.65600 * 120.00451 * 165.00110 * 5 4 3 7 7 O 1.42099 * 106.39871 * 311.46257 * 6 5 4 8 8 O 1.42098 * 106.40490 * 178.54251 * 6 5 4 9 9 C 1.76204 * 107.21520 * 65.00031 * 6 5 4 10 10 C 1.38239 * 119.99552 * 90.00315 * 9 6 5 11 11 C 1.38237 * 119.99640 * 179.72247 * 10 9 6 12 12 C 1.38235 * 119.99867 * 0.28100 * 11 10 9 13 13 C 1.50699 * 119.99881 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47191 * 89.99818 * 13 12 11 15 15 H 1.08002 * 119.99472 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00040 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99949 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99760 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47478 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47111 * 120.00109 * 18 16 14 21 21 H 1.48506 * 109.47121 * 240.00179 * 18 16 14 22 22 C 1.38236 * 120.00297 * 359.95019 * 12 11 10 23 23 C 1.38236 * 120.00015 * 270.19378 * 9 6 5 24 24 C 1.53002 * 117.52196 * 81.76376 * 3 2 1 25 25 C 1.52998 * 117.49692 * 150.39532 * 3 2 1 26 26 H 1.08999 * 109.47211 * 64.79422 * 1 2 3 27 27 H 1.09002 * 109.47054 * 184.78922 * 1 2 3 28 28 H 1.08999 * 109.47766 * 304.79502 * 1 2 3 29 29 H 1.08999 * 109.47368 * 239.99978 * 2 1 3 30 30 H 1.08999 * 109.47124 * 119.99380 * 2 1 3 31 31 H 1.09002 * 109.46985 * 159.41382 * 4 3 2 32 32 H 1.09003 * 109.47051 * 39.41865 * 4 3 2 33 33 H 0.97009 * 119.99753 * 345.00526 * 5 4 3 34 34 H 1.07997 * 120.00394 * 0.02562 * 10 9 6 35 35 H 1.07996 * 120.00042 * 180.25189 * 11 10 9 36 36 H 1.09005 * 109.47061 * 209.99453 * 13 12 11 37 37 H 1.08998 * 109.47500 * 329.99706 * 13 12 11 38 38 H 0.96990 * 119.99533 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.00102 * 180.02562 * 22 12 11 40 40 H 1.08003 * 120.00118 * 0.02562 * 23 9 6 41 41 H 1.09000 * 117.50041 * 214.96761 * 24 3 2 42 42 H 1.08996 * 117.49532 * 359.97438 * 24 3 2 43 43 H 1.09004 * 117.50200 * 359.96897 * 25 3 2 44 44 H 1.09000 * 117.50191 * 144.99396 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6881 2.2668 -1.2401 5 7 2.6215 1.9440 -2.3220 6 16 2.2723 2.3909 -3.8779 7 8 0.9344 1.9795 -4.1227 8 8 3.3725 1.9703 -4.6728 9 6 2.2680 4.1522 -3.9261 10 6 3.4342 4.8387 -4.2085 11 6 3.4296 6.2204 -4.2519 12 6 2.2601 6.9157 -4.0073 13 6 2.2552 8.4219 -4.0542 14 6 1.9378 8.8800 -5.4544 15 1 1.7581 8.1530 -6.2326 16 6 1.8769 10.2271 -5.7419 17 7 2.0963 11.1123 -4.7943 18 14 1.4842 10.7948 -7.4776 19 1 1.2822 9.6114 -8.3517 20 1 0.2471 11.6160 -7.4618 21 1 2.6117 11.6082 -7.9995 22 6 1.0950 6.2293 -3.7202 23 6 1.0994 4.8476 -3.6777 24 6 2.0922 2.1739 1.3429 25 6 3.3878 1.7153 0.6704 26 1 -0.3633 0.4376 -0.9298 27 1 -0.3633 -1.0241 0.0858 28 1 -0.3634 0.5864 0.8439 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.7596 3.3283 -1.0030 32 1 0.6713 2.0327 -1.5555 33 1 3.4443 1.4684 -2.1271 34 1 4.3478 4.2955 -4.3999 35 1 4.3397 6.7566 -4.4765 36 1 1.5005 8.8044 -3.3669 37 1 3.2359 8.7978 -3.7625 38 1 2.0538 12.0599 -4.9967 39 1 0.1813 6.7726 -3.5296 40 1 0.1891 4.3114 -3.4536 41 1 1.8760 3.2422 1.3429 42 1 1.7629 1.6275 2.2266 43 1 3.9111 0.8671 1.1120 44 1 4.0240 2.4819 0.2282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885046860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:43 Heat of formation + Delta-G solvation = -67.969759 kcal Electronic energy + Delta-G solvation = -24879.096144 eV Core-core repulsion = 21308.381280 eV Total energy + Delta-G solvation = -3570.714864 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.24009 -39.70810 -38.32437 -36.97125 -35.60932 -35.09827 -33.32214 -32.70183 -31.96536 -29.25187 -27.33498 -25.60185 -24.70282 -23.73261 -23.11226 -22.47468 -20.55499 -20.04808 -18.99972 -18.59451 -18.29054 -17.31404 -16.86883 -16.52107 -16.22398 -15.96433 -15.90011 -15.33156 -15.22450 -14.65219 -14.54867 -14.44955 -14.08158 -13.88857 -13.88005 -13.41910 -13.37732 -13.22613 -13.16425 -13.10553 -12.97135 -12.69401 -12.65804 -12.27352 -12.15072 -12.04609 -12.03325 -11.66040 -11.63127 -11.45393 -11.00179 -10.69434 -10.66634 -10.43815 -9.96689 -9.95240 -8.28148 -6.40780 -0.62346 -0.06831 0.39302 1.36647 1.38237 1.50901 1.99832 2.34150 2.56347 2.79383 2.93941 3.04594 3.32403 3.69881 3.81394 3.89522 3.94684 3.97551 4.10586 4.15527 4.41202 4.47289 4.48568 4.53730 4.64405 4.70431 4.81173 4.84325 4.88340 4.90776 4.99415 5.10347 5.11769 5.19762 5.24317 5.25481 5.28841 5.32978 5.34306 5.37897 5.52206 5.66465 5.85762 5.91933 6.09134 6.10842 6.71282 7.28457 8.82166 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.002880 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.119798 B = 9720.036453 C =10263.012985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 C -0.138 4.138 4 C 0.144 3.856 5 N -1.099 6.099 6 S 2.726 3.274 7 O -0.982 6.982 8 O -0.986 6.986 9 C -0.700 4.700 10 C -0.019 4.019 11 C -0.156 4.156 12 C -0.003 4.003 13 C 0.048 3.952 14 C -0.533 4.533 15 H 0.053 0.947 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.154 4.154 23 C -0.020 4.020 24 C -0.162 4.162 25 C -0.170 4.170 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.428 0.572 34 H 0.155 0.845 35 H 0.129 0.871 36 H 0.014 0.986 37 H 0.013 0.987 38 H 0.267 0.733 39 H 0.130 0.870 40 H 0.156 0.844 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.506 -21.926 12.808 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.018 3.982 5 N -0.862 5.862 6 S 2.816 3.184 7 O -0.972 6.972 8 O -0.977 6.977 9 C -0.787 4.787 10 C -0.038 4.038 11 C -0.175 4.175 12 C -0.003 4.003 13 C 0.011 3.989 14 C -0.571 4.571 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.789 3.211 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.173 4.173 23 C -0.039 4.039 24 C -0.199 4.199 25 C -0.207 4.207 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.265 0.735 34 H 0.172 0.828 35 H 0.147 0.853 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.148 0.852 40 H 0.174 0.826 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.174 -22.205 12.096 25.287 hybrid contribution 0.275 1.612 -0.543 1.723 sum 0.449 -20.594 11.554 23.618 Atomic orbital electron populations 1.21800 0.95512 1.02031 1.01993 1.21057 0.96022 0.92622 1.02536 1.21575 1.02657 0.96903 0.92876 1.21002 0.92743 0.98752 0.85686 1.55196 1.33706 1.72884 1.24424 1.00732 0.72505 0.72759 0.72386 1.93535 1.38452 1.80869 1.84347 1.93538 1.54908 1.81523 1.67684 1.30797 1.00543 1.26631 1.20739 1.21020 0.97076 0.93971 0.91735 1.21304 0.98605 0.94555 1.02988 1.20817 0.93675 0.97321 0.88527 1.18268 0.96869 0.87039 0.96710 1.21323 1.48736 0.92034 0.95008 0.92859 1.25860 0.94725 0.96774 1.01573 1.70059 1.49933 1.01935 1.34535 0.85409 0.78156 0.78348 0.79235 1.19230 1.19996 1.20055 1.21307 0.98284 0.94617 1.03091 1.21042 0.96742 0.93913 0.92183 1.23119 1.01206 1.00776 0.94837 1.23121 0.90343 1.03904 1.03333 0.93251 0.92116 0.92065 0.91705 0.90611 0.91031 0.89657 0.73501 0.82758 0.85316 0.96769 0.96873 0.92364 0.85170 0.82614 0.88620 0.87448 0.87483 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.66 71.98 0.70 -1.24 16 2 C -0.08 -1.00 5.82 30.59 0.18 -0.82 16 3 C -0.14 -1.74 1.60 -52.18 -0.08 -1.83 16 4 C 0.14 2.29 6.08 86.38 0.53 2.82 16 5 N -1.10 -19.01 5.97 -187.49 -1.12 -20.13 16 6 S 2.73 68.50 5.74 -56.49 -0.32 68.17 16 7 O -0.98 -29.11 16.76 -128.00 -2.15 -31.25 16 8 O -0.99 -29.44 17.28 -128.00 -2.21 -31.65 16 9 C -0.70 -20.55 5.95 22.27 0.13 -20.42 16 10 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 11 C -0.16 -5.80 9.70 22.27 0.22 -5.58 16 12 C 0.00 -0.13 5.07 -19.87 -0.10 -0.23 16 13 C 0.05 2.46 5.10 29.10 0.15 2.61 16 14 C -0.53 -29.72 9.09 25.60 0.23 -29.49 16 15 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 16 C 0.01 0.54 5.46 84.65 0.46 1.00 16 17 N -0.93 -54.14 13.29 21.45 0.28 -53.85 16 18 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 22 C -0.15 -5.68 9.70 22.27 0.22 -5.46 16 23 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 24 C -0.16 -1.81 9.90 30.60 0.30 -1.51 16 25 C -0.17 -1.88 9.70 30.60 0.30 -1.59 16 26 H 0.05 0.73 6.90 -2.39 -0.02 0.71 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.71 8.10 -2.39 -0.02 0.69 16 31 H 0.07 1.12 7.94 -2.39 -0.02 1.10 16 32 H 0.09 1.42 6.24 -2.39 -0.01 1.40 16 33 H 0.43 5.69 8.47 -96.74 -0.82 4.88 16 34 H 0.15 3.99 7.62 -2.91 -0.02 3.97 16 35 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 36 H 0.01 0.76 8.09 -2.38 -0.02 0.74 16 37 H 0.01 0.70 8.09 -2.39 -0.02 0.68 16 38 H 0.27 14.63 8.31 -92.72 -0.77 13.86 16 39 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.16 3.89 7.62 -2.91 -0.02 3.87 16 41 H 0.10 1.14 8.08 -2.39 -0.02 1.12 16 42 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -69.44 379.94 0.33 -69.11 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.17 Total: 16.43 kcal Atomic # 6 Polarization: -66.16 SS G_CDS: 3.65 Total: -62.51 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -0.83 Total: -73.98 kcal Atomic # 8 Polarization: -58.55 SS G_CDS: -4.36 Total: -62.90 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 68.50 SS G_CDS: -0.32 Total: 68.17 kcal Total: -69.44 0.33 -69.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885046860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.139 kcal (2) G-P(sol) polarization free energy of solvation -69.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds