Wall clock time and date at job start Tue Mar 31 2020 14:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50695 * 120.00148 * 2 1 4 4 C 1.53003 * 109.46646 * 125.00277 * 3 2 1 5 5 C 1.53003 * 109.46904 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47224 * 180.02562 * 5 4 3 7 7 N 1.46500 * 109.47122 * 180.02562 * 6 5 4 8 8 S 1.65599 * 119.99879 * 164.99639 * 7 6 5 9 9 O 1.42101 * 106.40542 * 311.46159 * 8 7 6 10 10 O 1.42098 * 106.40229 * 178.53922 * 8 7 6 11 11 C 1.76203 * 107.21703 * 65.00041 * 8 7 6 12 12 C 1.38233 * 120.00082 * 90.00045 * 11 8 7 13 13 C 1.38237 * 120.00111 * 179.97438 * 12 11 8 14 14 C 1.38231 * 119.99929 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99766 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47151 * 90.00279 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27762 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 C 1.38233 * 120.00119 * 0.25187 * 14 13 12 25 25 C 1.38232 * 119.99735 * 359.49690 * 24 14 13 26 26 H 1.08002 * 119.99672 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99817 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99672 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47324 * 5.00894 * 3 2 1 30 30 H 1.09003 * 109.47430 * 245.00144 * 3 2 1 31 31 H 1.08995 * 109.47487 * 60.00316 * 4 3 2 32 32 H 1.08995 * 109.47224 * 299.99803 * 4 3 2 33 33 H 1.09004 * 109.47043 * 60.00109 * 5 4 3 34 34 H 1.09003 * 109.47217 * 299.99895 * 5 4 3 35 35 H 1.08995 * 109.47527 * 59.99456 * 6 5 4 36 36 H 1.09003 * 109.46770 * 299.99963 * 6 5 4 37 37 H 0.96990 * 120.00143 * 345.00111 * 7 6 5 38 38 H 1.08000 * 120.00181 * 359.97438 * 12 11 8 39 39 H 1.08003 * 119.99517 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.47088 * 329.99418 * 15 14 13 41 41 H 1.09007 * 109.46560 * 209.99923 * 15 14 13 42 42 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.00409 * 179.72430 * 24 14 13 44 44 H 1.08008 * 119.99912 * 180.25278 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7998 2.6581 1.1821 6 6 4.7718 2.6857 2.3633 7 7 5.5035 3.9549 2.3641 8 16 6.3425 4.4262 3.7118 9 8 5.4578 4.2649 4.8120 10 8 6.9613 5.6634 3.3870 11 6 7.6462 3.2645 3.9473 12 6 8.8777 3.4786 3.3571 13 6 9.9007 2.5674 3.5423 14 6 9.6919 1.4419 4.3172 15 6 10.8070 0.4483 4.5185 16 6 11.6065 0.8307 5.7374 17 1 11.3346 1.7059 6.3088 18 6 12.6887 0.0667 6.1194 19 7 13.0200 -0.9989 5.4234 20 14 13.6844 0.5450 7.6258 21 1 13.1105 1.7748 8.2285 22 1 13.6424 -0.5590 8.6181 23 1 15.0923 0.7998 7.2282 24 6 8.4586 1.2248 4.9026 25 6 7.4373 2.1386 4.7217 26 1 -0.5400 0.9354 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3587 2.1316 0.0897 30 1 2.6214 1.4026 -0.9314 31 1 3.7400 0.5064 1.0920 32 1 2.4774 1.2354 2.1130 33 1 3.0946 3.4844 1.2720 34 1 4.3575 2.7561 0.2507 35 1 5.4769 1.8595 2.2731 36 1 4.2144 2.5876 3.2949 37 1 5.4965 4.5192 1.5752 38 1 9.0408 4.3577 2.7514 39 1 10.8628 2.7346 3.0808 40 1 11.4564 0.4486 3.6431 41 1 10.3856 -0.5473 4.6580 42 1 13.7817 -1.5361 5.6920 43 1 8.2941 0.3432 5.5044 44 1 6.4749 1.9711 5.1825 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885111695.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:58 Heat of formation + Delta-G solvation = -61.821018 kcal Electronic energy + Delta-G solvation = -23977.059849 eV Core-core repulsion = 20406.611615 eV Total energy + Delta-G solvation = -3570.448234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.81306 -37.43376 -37.04756 -35.76599 -35.41232 -33.68857 -32.32708 -31.56644 -30.58632 -28.05468 -27.44089 -23.79681 -23.72163 -22.35803 -21.66622 -20.89106 -20.11302 -19.36353 -17.83614 -17.24469 -16.46814 -16.36101 -16.23399 -15.29646 -15.19743 -14.95375 -14.43024 -14.37593 -14.24518 -13.79011 -13.68784 -13.12484 -12.90316 -12.83057 -12.74304 -12.26398 -12.07720 -11.97663 -11.93064 -11.84847 -11.70720 -11.50034 -11.45699 -11.09011 -10.95294 -10.93766 -10.92341 -10.52080 -10.50078 -9.81070 -9.69919 -9.67544 -9.54838 -8.60165 -8.55280 -8.39499 -6.18378 -4.23289 0.50852 1.31991 1.78447 1.92720 3.07298 3.22435 3.30548 3.35931 3.76173 4.10794 4.30108 4.36724 4.50623 4.56224 4.58226 4.81132 4.96480 5.04644 5.10528 5.15158 5.21665 5.23254 5.36040 5.40900 5.47046 5.51339 5.59825 5.71231 5.76335 5.84091 5.88885 5.90249 5.99662 6.23969 6.27756 6.32116 6.41276 6.49702 6.80888 6.83094 6.89892 7.28140 7.42008 7.57723 7.77022 8.12114 8.81836 9.41825 10.91694 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.002558 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.888159 B =10944.145850 C =12324.303955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.095 4.095 4 C -0.117 4.117 5 C -0.126 4.126 6 C 0.114 3.886 7 N -1.121 6.121 8 S 2.699 3.301 9 O -0.965 6.965 10 O -0.967 6.967 11 C -0.704 4.704 12 C -0.022 4.022 13 C -0.146 4.146 14 C 0.026 3.974 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.146 4.146 25 C -0.025 4.025 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.416 0.584 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.129 0.871 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.746 4.752 -11.635 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.171 4.171 3 C -0.132 4.132 4 C -0.155 4.155 5 C -0.165 4.165 6 C -0.012 4.012 7 N -0.880 5.880 8 S 2.791 3.209 9 O -0.955 6.955 10 O -0.957 6.957 11 C -0.793 4.793 12 C -0.041 4.041 13 C -0.165 4.165 14 C 0.026 3.974 15 C 0.002 3.998 16 C -0.555 4.555 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.165 4.165 25 C -0.044 4.044 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.250 0.750 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.147 0.853 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.818 5.226 -10.950 24.096 hybrid contribution 1.155 -0.324 0.331 1.245 sum -19.663 4.902 -10.619 22.878 Atomic orbital electron populations 1.23863 0.96031 1.01797 1.01792 1.23008 0.96059 0.98681 0.99337 1.20777 0.98198 0.95353 0.98890 1.21506 0.98000 0.97293 0.98693 1.21787 0.98068 0.98488 0.98118 1.21343 0.94679 0.84813 1.00343 1.55567 1.66570 1.32068 1.33783 1.01523 0.73373 0.73311 0.72657 1.93555 1.64277 1.86628 1.51029 1.93565 1.77184 1.41026 1.83955 1.30318 1.15593 1.17406 1.16020 1.20772 0.91349 0.97351 0.94660 1.21251 0.99099 0.94949 1.01195 1.21122 0.94902 0.94256 0.87133 1.18546 0.90481 0.92543 0.98205 1.21009 1.12349 1.11686 1.10410 0.92220 1.25009 0.97201 0.94842 0.97160 1.69953 1.27713 1.15979 1.39341 0.86423 0.79858 0.78668 0.82468 1.19559 1.20788 1.20808 1.21246 0.93173 1.00380 1.01653 1.20787 0.99231 0.91292 0.93128 0.88675 0.88609 0.87328 0.91490 0.90904 0.91200 0.91308 0.91063 0.91070 0.91345 0.90170 0.75050 0.85263 0.85348 0.94713 0.94708 0.92679 0.85336 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.22 14.32 29.01 0.42 -0.80 16 2 C -0.15 -0.98 9.52 -36.03 -0.34 -1.32 16 3 C -0.09 -0.56 5.66 -27.88 -0.16 -0.71 16 4 C -0.12 -0.72 5.20 -26.73 -0.14 -0.85 16 5 C -0.13 -0.79 5.36 -26.73 -0.14 -0.94 16 6 C 0.11 0.96 6.22 -4.04 -0.03 0.93 16 7 N -1.12 -10.63 6.00 -10.61 -0.06 -10.69 16 8 S 2.70 36.67 5.74 -107.50 -0.62 36.05 16 9 O -0.96 -15.40 16.75 -57.17 -0.96 -16.36 16 10 O -0.97 -15.44 17.28 -57.17 -0.99 -16.42 16 11 C -0.70 -10.94 5.95 -39.58 -0.24 -11.18 16 12 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 13 C -0.15 -2.70 9.70 -39.58 -0.38 -3.09 16 14 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 15 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 16 C -0.52 -13.99 9.09 -34.44 -0.31 -14.30 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 20 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.15 -2.67 9.70 -39.59 -0.38 -3.05 16 25 C -0.02 -0.40 9.52 -39.58 -0.38 -0.78 16 26 H 0.09 0.53 7.84 -52.49 -0.41 0.12 16 27 H 0.10 0.52 8.06 -52.49 -0.42 0.09 16 28 H 0.11 0.65 8.06 -52.49 -0.42 0.23 16 29 H 0.07 0.37 7.79 -51.93 -0.40 -0.03 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.69 7.75 -51.93 -0.40 0.29 16 37 H 0.42 3.02 8.65 -34.47 -0.30 2.72 16 38 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 39 H 0.13 2.26 8.06 -52.48 -0.42 1.83 16 40 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 41 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 44 H 0.13 1.76 7.62 -52.48 -0.40 1.36 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -32.83 385.88 -11.26 -44.09 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.93 Total: 0.61 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: -3.24 Total: -34.45 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.67 Total: -35.43 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.95 Total: -32.78 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 36.67 SS G_CDS: -0.62 Total: 36.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.83 -11.26 -44.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885111695.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.727 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds