Wall clock time and date at job start Tue Mar 31 2020 14:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50706 * 119.99713 * 2 1 4 4 C 1.30996 * 119.99828 * 180.02562 * 2 1 3 5 5 C 1.50696 * 120.00321 * 354.12396 * 4 2 1 6 6 C 1.52998 * 109.47366 * 121.49546 * 5 4 2 7 7 N 1.46494 * 109.47406 * 179.97438 * 6 5 4 8 8 S 1.65603 * 120.00113 * 165.00193 * 7 6 5 9 9 O 1.42099 * 106.40128 * 311.46188 * 8 7 6 10 10 O 1.42098 * 106.40200 * 178.54150 * 8 7 6 11 11 C 1.76197 * 107.21768 * 65.00031 * 8 7 6 12 12 C 1.38231 * 119.99889 * 90.00534 * 11 8 7 13 13 C 1.38243 * 119.99802 * 179.97438 * 12 11 8 14 14 C 1.38234 * 120.00103 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99864 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47244 * 89.99746 * 15 14 13 17 17 H 1.08007 * 119.99714 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00091 * 180.26932 * 16 15 14 19 19 N 1.31514 * 119.99926 * 359.73368 * 18 16 15 20 20 Si 1.86800 * 120.00087 * 179.72466 * 18 16 15 21 21 H 1.48500 * 109.46913 * 90.00522 * 20 18 16 22 22 H 1.48495 * 109.47387 * 210.00518 * 20 18 16 23 23 H 1.48502 * 109.47352 * 330.00989 * 20 18 16 24 24 C 1.38234 * 119.99759 * 0.25598 * 14 13 12 25 25 C 1.38233 * 120.00080 * 270.01860 * 11 8 7 26 26 H 1.09004 * 109.46796 * 264.79311 * 1 2 3 27 27 H 1.08995 * 109.47238 * 24.78711 * 1 2 3 28 28 H 1.09000 * 109.47484 * 144.79253 * 1 2 3 29 29 H 1.09005 * 109.47015 * 269.99939 * 3 2 1 30 30 H 1.08998 * 109.47270 * 30.00219 * 3 2 1 31 31 H 1.08993 * 109.46722 * 150.00559 * 3 2 1 32 32 H 1.08006 * 119.99578 * 174.12507 * 4 2 1 33 33 H 1.09001 * 109.46810 * 1.49583 * 5 4 2 34 34 H 1.08998 * 109.47408 * 241.49796 * 5 4 2 35 35 H 1.09001 * 109.46997 * 59.99690 * 6 5 4 36 36 H 1.08998 * 109.47060 * 300.00462 * 6 5 4 37 37 H 0.97002 * 120.00293 * 345.00584 * 7 6 5 38 38 H 1.07999 * 120.00233 * 359.97438 * 12 11 8 39 39 H 1.08003 * 119.99581 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.46842 * 329.99818 * 15 14 13 41 41 H 1.08993 * 109.46836 * 210.00108 * 15 14 13 42 42 H 0.96996 * 119.99935 * 179.97438 * 19 18 16 43 43 H 1.08000 * 119.99596 * 179.73136 * 24 14 13 44 44 H 1.08002 * 120.00264 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4145 -2.4362 0.1325 6 6 1.7033 -3.3169 -1.0847 7 7 0.9772 -4.5826 -0.9551 8 16 0.7963 -5.5720 -2.2708 9 8 0.3402 -4.7466 -3.3338 10 8 0.0880 -6.7173 -1.8172 11 6 2.4036 -6.1299 -2.7286 12 6 2.9133 -7.2927 -2.1819 13 6 4.1742 -7.7308 -2.5415 14 6 4.9255 -7.0058 -3.4475 15 6 6.3003 -7.4830 -3.8390 16 6 6.1945 -8.3913 -5.0369 17 1 5.2283 -8.6015 -5.4715 18 6 7.3304 -8.9579 -5.5750 19 7 8.5069 -8.7015 -5.0460 20 14 7.1984 -10.0898 -7.0551 21 1 7.3077 -9.2897 -8.3013 22 1 8.2943 -11.0910 -7.0119 23 1 5.8883 -10.7885 -7.0287 24 6 4.4181 -5.8398 -3.9897 25 6 3.1551 -5.4048 -3.6343 26 1 -0.3633 -0.0933 1.0235 27 1 -0.3633 0.9329 -0.4308 28 1 -0.3634 -0.8397 -0.5925 29 1 2.4422 1.6199 -1.0277 30 1 1.6714 2.0648 0.5139 31 1 3.2129 1.1748 0.5137 32 1 3.2378 -1.1368 -0.0963 33 1 0.3445 -2.2364 0.1907 34 1 1.7379 -2.9501 1.0377 35 1 2.7733 -3.5166 -1.1430 36 1 1.3799 -2.8031 -1.9899 37 1 0.6022 -4.8412 -0.0987 38 1 2.3265 -7.8590 -1.4738 39 1 4.5726 -8.6391 -2.1140 40 1 6.7459 -8.0289 -3.0074 41 1 6.9255 -6.6255 -4.0873 42 1 9.3060 -9.1004 -5.4244 43 1 5.0069 -5.2711 -4.6942 44 1 2.7571 -4.4959 -4.0610 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885135186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:38 Heat of formation + Delta-G solvation = -59.957711 kcal Electronic energy + Delta-G solvation = -24232.334099 eV Core-core repulsion = 20661.966663 eV Total energy + Delta-G solvation = -3570.367435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.80564 -37.80294 -37.10604 -35.76124 -35.33198 -33.68184 -31.56228 -30.80765 -30.57751 -28.13488 -27.43450 -26.07289 -23.73362 -22.66317 -22.27060 -20.90267 -19.51289 -18.24141 -17.76945 -17.23954 -16.45817 -16.32216 -15.72631 -15.24704 -15.03687 -14.54377 -14.47074 -14.37392 -14.17778 -14.00231 -13.75713 -13.11326 -12.85178 -12.74516 -12.60770 -12.31292 -12.23658 -12.06392 -12.02823 -11.95683 -11.88927 -11.69848 -11.49207 -11.44678 -11.08014 -10.93924 -10.91103 -10.52319 -10.48677 -9.80015 -9.69662 -9.55095 -8.98926 -8.59326 -8.54321 -8.38921 -6.17734 -4.22694 0.51192 1.32754 1.79198 1.85075 3.08601 3.24025 3.30577 3.35071 3.76751 4.11481 4.36952 4.39080 4.54303 4.63907 4.73079 4.82018 5.03088 5.15666 5.16897 5.21999 5.22746 5.24545 5.36534 5.42341 5.44834 5.47511 5.62400 5.66741 5.71953 5.76609 5.81599 5.90829 5.92647 6.24718 6.32874 6.37643 6.50463 6.61647 6.81638 6.83826 6.90603 7.28701 7.42690 7.58423 7.77428 8.12711 8.82090 9.42305 10.92323 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.002665 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.685791 B =10504.159988 C =11577.044428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.129 4.129 3 C -0.118 4.118 4 C -0.166 4.166 5 C -0.101 4.101 6 C 0.120 3.880 7 N -1.121 6.121 8 S 2.699 3.301 9 O -0.965 6.965 10 O -0.967 6.967 11 C -0.704 4.704 12 C -0.022 4.022 13 C -0.146 4.146 14 C 0.027 3.973 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.146 4.146 25 C -0.025 4.025 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.416 0.584 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.129 0.871 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.530 15.985 12.559 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.129 4.129 3 C -0.175 4.175 4 C -0.185 4.185 5 C -0.139 4.139 6 C -0.007 4.007 7 N -0.880 5.880 8 S 2.791 3.209 9 O -0.955 6.955 10 O -0.957 6.957 11 C -0.793 4.793 12 C -0.041 4.041 13 C -0.165 4.165 14 C 0.026 3.974 15 C 0.003 3.997 16 C -0.555 4.555 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.165 4.165 25 C -0.044 4.044 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.249 0.751 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.147 0.853 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.065 15.798 11.952 24.296 hybrid contribution 0.834 -0.882 -0.449 1.294 sum -13.232 14.916 11.503 23.020 Atomic orbital electron populations 1.20932 0.92447 1.02653 1.02052 1.21658 0.95845 0.95132 1.00281 1.20840 0.99637 0.94860 1.02175 1.22515 0.99780 0.93122 1.03092 1.20955 1.01169 0.93912 0.97876 1.21268 0.96462 0.83177 0.99743 1.55585 1.71503 1.32707 1.28234 1.01523 0.74001 0.72647 0.72693 1.93555 1.79323 1.68552 1.54041 1.93565 1.71217 1.49609 1.81334 1.30312 1.25180 1.08942 1.14905 1.20772 0.94986 0.92669 0.95695 1.21253 0.94454 1.00856 0.99942 1.21118 0.97943 0.90368 0.87951 1.18537 0.86607 0.97169 0.97428 1.20969 0.93528 1.28241 1.12784 0.92290 1.25005 0.95204 0.96570 0.97385 1.69945 0.97996 1.44095 1.40958 0.86476 0.77921 0.80424 0.82575 1.20436 1.21026 1.19695 1.21245 0.95747 0.97922 1.01542 1.20787 0.93485 0.97407 0.92744 0.91578 0.91944 0.91125 0.91427 0.91911 0.91838 0.86859 0.90157 0.90223 0.91296 0.90135 0.75051 0.85257 0.85349 0.94715 0.94721 0.92627 0.85345 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.00 36.01 0.32 -0.47 16 2 C -0.13 -0.93 6.05 -101.06 -0.61 -1.55 16 3 C -0.12 -0.72 10.00 36.01 0.36 -0.36 16 4 C -0.17 -1.25 9.10 -36.03 -0.33 -1.58 16 5 C -0.10 -0.72 5.51 -27.89 -0.15 -0.88 16 6 C 0.12 1.07 6.20 -4.05 -0.03 1.04 16 7 N -1.12 -10.83 6.00 -10.62 -0.06 -10.89 16 8 S 2.70 37.00 5.74 -107.50 -0.62 36.39 16 9 O -0.96 -15.52 16.75 -57.17 -0.96 -16.48 16 10 O -0.97 -15.49 17.28 -57.17 -0.99 -16.48 16 11 C -0.70 -11.04 5.95 -39.59 -0.24 -11.27 16 12 C -0.02 -0.36 9.52 -39.58 -0.38 -0.73 16 13 C -0.15 -2.72 9.70 -39.58 -0.38 -3.11 16 14 C 0.03 0.55 5.07 -104.63 -0.53 0.02 16 15 C 0.04 0.96 5.11 -29.04 -0.15 0.81 16 16 C -0.52 -14.04 9.09 -34.44 -0.31 -14.35 16 17 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 20 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.15 -2.69 9.70 -39.58 -0.38 -3.07 16 25 C -0.02 -0.40 9.52 -39.58 -0.38 -0.78 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 28 H 0.07 0.47 6.54 -51.93 -0.34 0.13 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.06 0.37 8.06 -51.93 -0.42 -0.05 16 32 H 0.11 0.82 8.05 -52.48 -0.42 0.40 16 33 H 0.08 0.53 5.56 -51.93 -0.29 0.24 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.76 7.75 -51.93 -0.40 0.35 16 37 H 0.42 3.05 8.65 -34.47 -0.30 2.75 16 38 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 39 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 40 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 41 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 44 H 0.13 1.79 7.62 -52.49 -0.40 1.39 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -32.88 381.87 -11.17 -44.05 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.73 Total: 1.03 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: -3.28 Total: -34.71 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.67 Total: -35.69 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.95 Total: -32.96 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 37.00 SS G_CDS: -0.62 Total: 36.39 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.88 -11.17 -44.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885135186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.908 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds