Wall clock time and date at job start Tue Mar 31 2020 14:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50706 * 119.99713 * 2 1 4 4 C 1.30996 * 119.99828 * 180.02562 * 2 1 3 5 5 C 1.50696 * 120.00321 * 354.12396 * 4 2 1 6 6 C 1.52998 * 109.47366 * 121.49546 * 5 4 2 7 7 N 1.46494 * 109.47406 * 179.97438 * 6 5 4 8 8 S 1.65603 * 120.00113 * 165.00193 * 7 6 5 9 9 O 1.42099 * 106.40128 * 311.46188 * 8 7 6 10 10 O 1.42098 * 106.40200 * 178.54150 * 8 7 6 11 11 C 1.76197 * 107.21768 * 65.00031 * 8 7 6 12 12 C 1.38231 * 119.99889 * 90.00534 * 11 8 7 13 13 C 1.38243 * 119.99802 * 179.97438 * 12 11 8 14 14 C 1.38234 * 120.00103 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99864 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47244 * 89.99746 * 15 14 13 17 17 H 1.08007 * 119.99714 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00091 * 180.26932 * 16 15 14 19 19 N 1.31514 * 119.99926 * 359.73368 * 18 16 15 20 20 Si 1.86800 * 120.00087 * 179.72466 * 18 16 15 21 21 H 1.48500 * 109.46913 * 90.00522 * 20 18 16 22 22 H 1.48495 * 109.47387 * 210.00518 * 20 18 16 23 23 H 1.48502 * 109.47352 * 330.00989 * 20 18 16 24 24 C 1.38234 * 119.99759 * 0.25598 * 14 13 12 25 25 C 1.38233 * 120.00080 * 270.01860 * 11 8 7 26 26 H 1.09004 * 109.46796 * 264.79311 * 1 2 3 27 27 H 1.08995 * 109.47238 * 24.78711 * 1 2 3 28 28 H 1.09000 * 109.47484 * 144.79253 * 1 2 3 29 29 H 1.09005 * 109.47015 * 269.99939 * 3 2 1 30 30 H 1.08998 * 109.47270 * 30.00219 * 3 2 1 31 31 H 1.08993 * 109.46722 * 150.00559 * 3 2 1 32 32 H 1.08006 * 119.99578 * 174.12507 * 4 2 1 33 33 H 1.09001 * 109.46810 * 1.49583 * 5 4 2 34 34 H 1.08998 * 109.47408 * 241.49796 * 5 4 2 35 35 H 1.09001 * 109.46997 * 59.99690 * 6 5 4 36 36 H 1.08998 * 109.47060 * 300.00462 * 6 5 4 37 37 H 0.97002 * 120.00293 * 345.00584 * 7 6 5 38 38 H 1.07999 * 120.00233 * 359.97438 * 12 11 8 39 39 H 1.08003 * 119.99581 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.46842 * 329.99818 * 15 14 13 41 41 H 1.08993 * 109.46836 * 210.00108 * 15 14 13 42 42 H 0.96996 * 119.99935 * 179.97438 * 19 18 16 43 43 H 1.08000 * 119.99596 * 179.73136 * 24 14 13 44 44 H 1.08002 * 120.00264 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4145 -2.4362 0.1325 6 6 1.7033 -3.3169 -1.0847 7 7 0.9772 -4.5826 -0.9551 8 16 0.7963 -5.5720 -2.2708 9 8 0.3402 -4.7466 -3.3338 10 8 0.0880 -6.7173 -1.8172 11 6 2.4036 -6.1299 -2.7286 12 6 2.9133 -7.2927 -2.1819 13 6 4.1742 -7.7308 -2.5415 14 6 4.9255 -7.0058 -3.4475 15 6 6.3003 -7.4830 -3.8390 16 6 6.1945 -8.3913 -5.0369 17 1 5.2283 -8.6015 -5.4715 18 6 7.3304 -8.9579 -5.5750 19 7 8.5069 -8.7015 -5.0460 20 14 7.1984 -10.0898 -7.0551 21 1 7.3077 -9.2897 -8.3013 22 1 8.2943 -11.0910 -7.0119 23 1 5.8883 -10.7885 -7.0287 24 6 4.4181 -5.8398 -3.9897 25 6 3.1551 -5.4048 -3.6343 26 1 -0.3633 -0.0933 1.0235 27 1 -0.3633 0.9329 -0.4308 28 1 -0.3634 -0.8397 -0.5925 29 1 2.4422 1.6199 -1.0277 30 1 1.6714 2.0648 0.5139 31 1 3.2129 1.1748 0.5137 32 1 3.2378 -1.1368 -0.0963 33 1 0.3445 -2.2364 0.1907 34 1 1.7379 -2.9501 1.0377 35 1 2.7733 -3.5166 -1.1430 36 1 1.3799 -2.8031 -1.9899 37 1 0.6022 -4.8412 -0.0987 38 1 2.3265 -7.8590 -1.4738 39 1 4.5726 -8.6391 -2.1140 40 1 6.7459 -8.0289 -3.0074 41 1 6.9255 -6.6255 -4.0873 42 1 9.3060 -9.1004 -5.4244 43 1 5.0069 -5.2711 -4.6942 44 1 2.7571 -4.4959 -4.0610 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885135186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:37 Heat of formation + Delta-G solvation = -79.991601 kcal Electronic energy + Delta-G solvation = -24233.202833 eV Core-core repulsion = 20661.966663 eV Total energy + Delta-G solvation = -3571.236170 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.23407 -38.49843 -38.19887 -36.97148 -36.05639 -35.59767 -33.32198 -31.96099 -31.43960 -29.25012 -28.60742 -26.69280 -25.59786 -23.77203 -23.18584 -22.47114 -20.58621 -19.12494 -18.70573 -18.56496 -18.27067 -17.28966 -16.86791 -16.42830 -16.25890 -15.96978 -15.64204 -15.27856 -15.05524 -14.78015 -14.65959 -14.57981 -14.45183 -13.93107 -13.48899 -13.41513 -13.40237 -13.23317 -13.19503 -13.15280 -12.80907 -12.72042 -12.68056 -12.64767 -12.49083 -12.14254 -12.08796 -12.04005 -11.68697 -11.58925 -11.42150 -10.66056 -10.46036 -9.96315 -9.95457 -9.52436 -8.27833 -6.40512 -0.61735 -0.06360 0.39657 1.30409 1.37913 1.38161 1.49704 2.03999 2.34347 2.56586 2.83001 3.04809 3.32730 3.86320 3.95077 3.97518 4.03431 4.15084 4.15863 4.24150 4.44032 4.47641 4.52720 4.62534 4.69726 4.75440 4.81641 4.85671 4.90951 4.91399 4.99686 5.10501 5.12572 5.17982 5.22981 5.24654 5.25497 5.32729 5.33341 5.66449 5.85627 5.86033 5.92274 6.08353 6.09388 6.13239 6.71262 7.28558 8.82269 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.002665 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.685791 B =10504.159988 C =11577.044428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.134 4.134 3 C -0.120 4.120 4 C -0.179 4.179 5 C -0.095 4.095 6 C 0.112 3.888 7 N -1.103 6.103 8 S 2.727 3.273 9 O -0.984 6.984 10 O -0.986 6.986 11 C -0.701 4.701 12 C -0.019 4.019 13 C -0.157 4.157 14 C -0.004 4.004 15 C 0.048 3.952 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.155 4.155 25 C -0.020 4.020 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.430 0.570 38 H 0.156 0.844 39 H 0.129 0.871 40 H 0.013 0.987 41 H 0.014 0.986 42 H 0.267 0.733 43 H 0.130 0.870 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.516 16.698 13.023 26.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.134 4.134 3 C -0.177 4.177 4 C -0.198 4.198 5 C -0.134 4.134 6 C -0.013 4.013 7 N -0.866 5.866 8 S 2.817 3.183 9 O -0.974 6.974 10 O -0.976 6.976 11 C -0.788 4.788 12 C -0.038 4.038 13 C -0.175 4.175 14 C -0.004 4.004 15 C 0.011 3.989 16 C -0.571 4.571 17 H 0.071 0.929 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.788 3.212 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.193 1.193 24 C -0.173 4.173 25 C -0.039 4.039 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.267 0.733 38 H 0.174 0.826 39 H 0.147 0.853 40 H 0.031 0.969 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.148 0.852 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.039 16.500 12.420 26.149 hybrid contribution 1.370 -0.984 -0.499 1.759 sum -14.669 15.516 11.921 24.455 Atomic orbital electron populations 1.20968 0.91863 1.02852 1.02583 1.21897 0.96485 0.95465 0.99591 1.20877 0.99780 0.94699 1.02362 1.22580 0.99888 0.93404 1.03884 1.20929 1.01655 0.93423 0.97368 1.21448 0.96478 0.82770 1.00646 1.55206 1.71367 1.32140 1.27930 1.00708 0.72679 0.72166 0.72754 1.93535 1.79258 1.68871 1.55687 1.93539 1.71349 1.51014 1.81687 1.30802 1.25915 1.08307 1.13750 1.21030 0.94097 0.92916 0.95723 1.21316 0.95434 1.00944 0.99843 1.20821 0.96689 0.92348 0.90526 1.18261 0.88898 0.95736 0.95963 1.21286 0.93348 1.28758 1.13727 0.92850 1.25866 0.94837 0.98052 1.00226 1.70052 0.98695 1.45239 1.42473 0.85459 0.78060 0.78522 0.79124 1.19628 1.20294 1.19275 1.21306 0.96920 0.97385 1.01728 1.21041 0.92400 0.98142 0.92308 0.90748 0.91433 0.91374 0.91364 0.91068 0.91733 0.86981 0.89418 0.89167 0.91050 0.90431 0.73303 0.82643 0.85290 0.96867 0.96802 0.92365 0.85198 0.82666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 9.00 71.24 0.64 -0.71 16 2 C -0.13 -1.71 6.05 -16.48 -0.10 -1.81 16 3 C -0.12 -1.30 10.00 71.24 0.71 -0.59 16 4 C -0.18 -2.38 9.10 25.65 0.23 -2.15 16 5 C -0.10 -1.14 5.51 29.85 0.16 -0.97 16 6 C 0.11 1.73 6.20 86.38 0.54 2.26 16 7 N -1.10 -18.18 6.00 -187.51 -1.12 -19.30 16 8 S 2.73 67.89 5.74 -56.49 -0.32 67.56 16 9 O -0.98 -29.22 16.75 -128.00 -2.14 -31.36 16 10 O -0.99 -29.02 17.28 -128.00 -2.21 -31.23 16 11 C -0.70 -20.61 5.95 22.27 0.13 -20.48 16 12 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 13 C -0.16 -5.85 9.70 22.27 0.22 -5.64 16 14 C 0.00 -0.15 5.07 -19.87 -0.10 -0.25 16 15 C 0.05 2.48 5.11 29.10 0.15 2.63 16 16 C -0.53 -29.78 9.09 25.60 0.23 -29.54 16 17 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 18 C 0.01 0.51 5.46 84.65 0.46 0.98 16 19 N -0.93 -54.27 13.29 21.45 0.28 -53.98 16 20 Si 0.96 43.71 29.54 68.60 2.03 45.73 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 C -0.15 -5.72 9.70 22.27 0.22 -5.51 16 25 C -0.02 -0.61 9.52 22.27 0.21 -0.40 16 26 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 28 H 0.07 0.77 6.54 -2.39 -0.02 0.75 16 29 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.07 0.63 8.12 -2.39 -0.02 0.62 16 31 H 0.06 0.67 8.06 -2.39 -0.02 0.65 16 32 H 0.11 1.48 8.05 -2.91 -0.02 1.46 16 33 H 0.09 0.93 5.56 -2.39 -0.01 0.91 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.28 7.75 -2.39 -0.02 1.26 16 37 H 0.43 4.92 8.65 -96.74 -0.84 4.08 16 38 H 0.16 3.99 7.62 -2.91 -0.02 3.97 16 39 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.01 0.71 8.09 -2.39 -0.02 0.69 16 41 H 0.01 0.74 8.08 -2.39 -0.02 0.72 16 42 H 0.27 14.71 8.31 -92.71 -0.77 13.93 16 43 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 44 H 0.16 3.94 7.62 -2.91 -0.02 3.92 16 Total: -1.00 -70.48 381.87 0.58 -69.90 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.15 Total: 15.24 kcal Atomic # 6 Polarization: -66.48 SS G_CDS: 3.92 Total: -62.56 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -0.84 Total: -73.29 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -4.36 Total: -62.59 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 67.89 SS G_CDS: -0.32 Total: 67.56 kcal Total: -70.48 0.58 -69.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885135186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.089 kcal (2) G-P(sol) polarization free energy of solvation -70.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds