Wall clock time and date at job start Tue Mar 31 2020 13:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46946 * 2 1 4 4 C 1.52999 * 113.27895 * 313.06382 * 3 2 1 5 5 C 1.53501 * 114.20808 * 179.97438 * 3 2 1 6 6 N 1.47068 * 87.98347 * 220.14625 * 5 3 2 7 7 S 1.65603 * 136.05443 * 207.08094 * 6 5 3 8 8 O 1.42094 * 106.40226 * 336.46587 * 7 6 5 9 9 O 1.42101 * 106.40228 * 203.53890 * 7 6 5 10 10 C 1.76205 * 107.21426 * 90.00072 * 7 6 5 11 11 C 1.38228 * 120.00116 * 270.20933 * 10 7 6 12 12 C 1.38238 * 120.00114 * 180.26456 * 11 10 7 13 13 C 1.38234 * 119.99675 * 359.50218 * 12 11 10 14 14 C 1.50702 * 120.00257 * 180.25732 * 13 12 11 15 15 C 1.50701 * 109.46833 * 89.99861 * 14 13 12 16 16 H 1.08001 * 120.00342 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00009 * 179.97438 * 15 14 13 18 18 N 1.31507 * 119.99884 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00069 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47088 * 60.00016 * 19 17 15 21 21 H 1.48495 * 109.47025 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46843 * 300.00364 * 19 17 15 23 23 C 1.38235 * 120.00220 * 0.28720 * 13 12 11 24 24 C 1.38234 * 119.99800 * 89.99999 * 10 7 6 25 25 C 1.47064 * 87.88414 * 27.34225 * 6 5 3 26 26 H 1.09004 * 109.46866 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47759 * 299.99803 * 1 2 3 28 28 H 1.09000 * 109.47051 * 60.00926 * 1 2 3 29 29 H 1.09004 * 109.47576 * 239.99598 * 2 1 3 30 30 H 1.09007 * 109.47259 * 119.99397 * 2 1 3 31 31 H 1.08999 * 109.47316 * 286.93139 * 4 3 2 32 32 H 1.09002 * 109.47395 * 46.93494 * 4 3 2 33 33 H 1.09004 * 109.47150 * 166.93859 * 4 3 2 34 34 H 1.09002 * 113.46771 * 105.36537 * 5 3 2 35 35 H 1.09000 * 113.46358 * 334.92544 * 5 3 2 36 36 H 1.08004 * 120.00270 * 0.03858 * 11 10 7 37 37 H 1.08002 * 120.00519 * 179.78838 * 12 11 10 38 38 H 1.08993 * 109.47429 * 210.00613 * 14 13 12 39 39 H 1.08998 * 109.46961 * 330.00864 * 14 13 12 40 40 H 0.96998 * 119.99939 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.00471 * 179.97438 * 23 13 12 42 42 H 1.08001 * 120.00294 * 359.97438 * 24 10 7 43 43 H 1.08997 * 113.47220 * 87.44163 * 25 6 5 44 44 H 1.09008 * 113.46426 * 217.87603 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.3367 2.3325 -1.0268 5 6 3.5697 1.5693 0.0006 6 7 3.4249 2.6849 0.9480 7 16 4.2966 4.0373 1.3397 8 8 5.6396 3.7737 0.9575 9 8 3.9200 4.3877 2.6643 10 6 3.7304 5.3421 0.2997 11 6 4.3290 5.5570 -0.9275 12 6 3.8883 6.5841 -1.7411 13 6 2.8422 7.3897 -1.3318 14 6 2.3580 8.5058 -2.2211 15 6 1.2725 7.9889 -3.1298 16 1 0.9639 6.9557 -3.0691 17 6 0.6726 8.8353 -4.0380 18 7 1.0480 10.0935 -4.1116 19 14 -0.6734 8.1948 -5.1639 20 1 -1.8038 7.6877 -4.3452 21 1 -1.1505 9.2945 -6.0403 22 1 -0.1353 7.0929 -6.0014 23 6 2.2407 7.1720 -0.1063 24 6 2.6846 6.1480 0.7093 25 6 2.1687 2.0673 1.3990 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.6791 2.0722 -2.0283 32 1 0.2591 2.1820 -0.9606 33 1 1.5709 3.3774 -0.8230 34 1 3.9808 1.8691 -0.9634 35 1 4.0768 0.7027 0.4247 36 1 5.1434 4.9249 -1.2493 37 1 4.3583 6.7543 -2.6985 38 1 1.9629 9.3147 -1.6066 39 1 3.1879 8.8779 -2.8218 40 1 0.6263 10.6889 -4.7508 41 1 1.4237 7.8017 0.2137 42 1 2.2144 5.9777 1.6665 43 1 2.3065 1.3320 2.1917 44 1 1.3862 2.7913 1.6264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885199925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:37 Heat of formation + Delta-G solvation = -49.292984 kcal Electronic energy + Delta-G solvation = -25497.188254 eV Core-core repulsion = 21927.283276 eV Total energy + Delta-G solvation = -3569.904978 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01838 -40.26622 -38.37465 -37.02763 -35.60493 -34.55587 -33.33812 -31.99990 -29.92709 -29.26473 -27.53847 -26.96301 -25.59461 -23.93123 -23.76137 -22.45492 -20.13504 -19.28600 -18.95730 -18.55994 -18.33147 -17.22896 -16.87866 -16.38825 -16.14279 -16.00047 -15.59436 -15.38057 -15.22534 -14.63837 -14.49863 -14.34021 -14.21091 -13.90554 -13.49477 -13.43876 -13.39177 -13.30208 -13.28631 -13.23568 -12.73103 -12.65406 -12.65274 -12.56464 -12.38254 -12.14077 -12.07519 -11.70190 -11.53093 -11.46420 -11.22707 -10.98403 -10.64943 -10.09579 -10.00007 -9.93866 -8.26322 -6.39692 -0.75332 -0.08790 0.36247 1.39143 1.41103 1.49548 1.92398 2.35073 2.56078 2.77179 3.04910 3.06505 3.39647 3.72923 3.80666 3.92249 3.96334 4.12830 4.21817 4.33938 4.43890 4.56439 4.58573 4.66837 4.68994 4.74121 4.77743 4.87123 4.87251 4.94711 5.02972 5.06263 5.10692 5.19267 5.22626 5.24628 5.27284 5.30365 5.34951 5.47333 5.66264 5.66626 5.67434 5.83042 5.89140 6.08531 6.71786 7.29480 8.83956 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012220 B = 0.004025 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.684263 B = 6955.435545 C = 8605.051258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.100 4.100 3 C -0.087 4.087 4 C -0.135 4.135 5 C 0.129 3.871 6 N -1.049 6.049 7 S 2.744 3.256 8 O -0.982 6.982 9 O -0.983 6.983 10 C -0.697 4.697 11 C -0.018 4.018 12 C -0.153 4.153 13 C -0.001 4.001 14 C 0.048 3.952 15 C -0.531 4.531 16 H 0.058 0.942 17 C 0.009 3.991 18 N -0.928 5.928 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.266 1.266 23 C -0.153 4.153 24 C -0.019 4.019 25 C 0.129 3.871 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.152 0.848 37 H 0.130 0.870 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.267 0.733 41 H 0.130 0.870 42 H 0.151 0.849 43 H 0.108 0.892 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 -22.223 8.950 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.138 4.138 3 C -0.089 4.089 4 C -0.193 4.193 5 C 0.004 3.996 6 N -0.889 5.889 7 S 2.839 3.161 8 O -0.973 6.973 9 O -0.973 6.973 10 C -0.784 4.784 11 C -0.037 4.037 12 C -0.172 4.172 13 C -0.001 4.001 14 C 0.011 3.989 15 C -0.569 4.569 16 H 0.076 0.924 17 C -0.190 4.190 18 N -0.568 5.568 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.172 4.172 24 C -0.038 4.038 25 C 0.005 3.995 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.127 0.873 36 H 0.169 0.831 37 H 0.148 0.852 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.076 0.924 41 H 0.148 0.852 42 H 0.169 0.831 43 H 0.126 0.874 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.436 -21.772 9.572 23.827 hybrid contribution -0.903 1.151 -1.304 1.959 sum 0.533 -20.621 8.268 22.223 Atomic orbital electron populations 1.21846 0.95614 1.01938 1.01975 1.21395 0.96130 0.92744 1.03532 1.22341 0.94544 0.97002 0.95026 1.21645 1.01200 0.98182 0.98229 1.22954 0.96756 0.87436 0.92436 1.59735 1.39362 1.35515 1.54315 1.00026 0.71914 0.71801 0.72393 1.93512 1.34297 1.85011 1.84479 1.93513 1.84163 1.83948 1.35709 1.30794 1.12030 1.22241 1.13368 1.20968 0.96295 0.95398 0.91050 1.21283 0.98275 0.96810 1.00807 1.20804 0.91356 0.94508 0.93449 1.18268 0.95760 0.91645 0.93246 1.21234 1.19736 0.96678 1.19218 0.92380 1.25903 0.99487 0.94908 0.98735 1.70060 1.43720 1.05721 1.37256 0.85486 0.78986 0.78063 0.78484 1.19122 1.20676 1.19127 1.21280 1.01437 0.99886 0.94577 1.20968 0.92322 0.91928 0.98555 1.23021 0.83110 0.96035 0.97382 0.92068 0.92645 0.92804 0.90556 0.89937 0.91773 0.90728 0.94276 0.90360 0.87290 0.83080 0.85216 0.97079 0.97069 0.92419 0.85234 0.83117 0.87372 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.27 71.98 0.67 -0.87 16 2 C -0.10 -0.89 5.59 30.59 0.17 -0.72 16 3 C -0.09 -1.18 1.19 -51.76 -0.06 -1.24 16 4 C -0.14 -2.42 8.90 71.98 0.64 -1.78 16 5 C 0.13 1.96 7.89 83.18 0.66 2.61 16 6 N -1.05 -21.69 4.03 -549.31 -2.22 -23.90 16 7 S 2.74 76.82 6.27 -56.49 -0.35 76.46 16 8 O -0.98 -31.55 17.29 -128.00 -2.21 -33.76 16 9 O -0.98 -31.62 17.28 -128.00 -2.21 -33.83 16 10 C -0.70 -21.85 5.97 22.27 0.13 -21.72 16 11 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 12 C -0.15 -5.81 9.70 22.27 0.22 -5.60 16 13 C 0.00 -0.04 5.07 -19.87 -0.10 -0.14 16 14 C 0.05 2.47 5.10 29.10 0.15 2.61 16 15 C -0.53 -29.10 9.09 25.60 0.23 -28.87 16 16 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 17 C 0.01 0.47 5.46 84.66 0.46 0.93 16 18 N -0.93 -54.43 13.29 21.45 0.28 -54.14 16 19 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 C -0.15 -5.82 9.70 22.27 0.22 -5.60 16 24 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 25 C 0.13 1.99 7.85 83.26 0.65 2.65 16 26 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.62 6.35 -2.39 -0.02 0.60 16 29 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.08 0.52 7.90 -2.38 -0.02 0.51 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.21 5.96 -2.39 -0.01 1.20 16 33 H 0.04 0.90 7.93 -2.38 -0.02 0.88 16 34 H 0.08 1.20 8.12 -2.39 -0.02 1.19 16 35 H 0.11 1.16 8.10 -2.39 -0.02 1.14 16 36 H 0.15 4.15 7.62 -2.91 -0.02 4.13 16 37 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.01 0.60 8.08 -2.39 -0.02 0.58 16 39 H 0.01 0.61 8.09 -2.39 -0.02 0.59 16 40 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 41 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 42 H 0.15 4.16 7.62 -2.91 -0.02 4.14 16 43 H 0.11 1.18 7.94 -2.39 -0.02 1.17 16 44 H 0.08 1.22 8.12 -2.38 -0.02 1.20 16 Total: -1.00 -69.90 375.43 0.75 -69.15 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.98 Total: 13.89 kcal Atomic # 6 Polarization: -62.96 SS G_CDS: 4.46 Total: -58.50 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -1.93 Total: -78.04 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -4.43 Total: -67.59 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 76.82 SS G_CDS: -0.35 Total: 76.46 kcal Total: -69.90 0.75 -69.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885199925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.858 kcal (2) G-P(sol) polarization free energy of solvation -69.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds