Wall clock time and date at job start Tue Mar 31 2020 13:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47363 * 2 1 4 4 C 1.53002 * 109.46975 * 119.99986 * 2 1 3 5 5 N 1.46494 * 115.55257 * 301.47694 * 4 2 1 6 6 S 1.65603 * 120.00341 * 158.14520 * 5 4 2 7 7 O 1.42100 * 106.39995 * 307.89751 * 6 5 4 8 8 O 1.42095 * 106.40299 * 174.97876 * 6 5 4 9 9 C 1.76193 * 107.21740 * 61.43469 * 6 5 4 10 10 C 1.38241 * 119.99759 * 82.37884 * 9 6 5 11 11 C 1.38236 * 119.99812 * 180.02562 * 10 9 6 12 12 C 1.38233 * 119.99923 * 0.25478 * 11 10 9 13 13 C 1.50706 * 119.99832 * 179.72739 * 12 11 10 14 14 C 1.50700 * 109.46903 * 90.00027 * 13 12 11 15 15 H 1.07997 * 120.00530 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99545 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00110 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99709 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47213 * 90.00417 * 18 16 14 20 20 H 1.48501 * 109.46917 * 210.00071 * 18 16 14 21 21 H 1.48496 * 109.47044 * 330.00077 * 18 16 14 22 22 C 1.38239 * 120.00297 * 359.48899 * 12 11 10 23 23 C 1.38233 * 119.99703 * 0.49134 * 22 12 11 24 24 C 1.52997 * 117.49890 * 87.15021 * 4 2 1 25 25 C 1.53006 * 117.49517 * 155.80844 * 4 2 1 26 26 H 1.08999 * 109.47527 * 185.07101 * 1 2 3 27 27 H 1.09001 * 109.47014 * 305.06696 * 1 2 3 28 28 H 1.08998 * 109.47519 * 65.06490 * 1 2 3 29 29 H 1.09001 * 109.46707 * 239.99765 * 2 1 3 30 30 H 1.09000 * 109.46837 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46735 * 299.99685 * 3 2 1 32 32 H 1.08993 * 109.47158 * 59.99987 * 3 2 1 33 33 H 0.97000 * 119.99592 * 338.14568 * 5 4 2 34 34 H 1.07995 * 120.00090 * 359.97438 * 10 9 6 35 35 H 1.07998 * 119.99799 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.46865 * 209.99792 * 13 12 11 37 37 H 1.09004 * 109.47065 * 330.00042 * 13 12 11 38 38 H 0.97001 * 120.00044 * 179.97438 * 17 16 14 39 39 H 1.07998 * 119.99892 * 180.25245 * 22 12 11 40 40 H 1.07991 * 119.99999 * 179.76703 * 23 22 12 41 41 H 1.08997 * 117.50288 * 215.00147 * 24 4 2 42 42 H 1.09008 * 117.49910 * 0.02562 * 24 4 2 43 43 H 1.08996 * 117.50017 * 359.97199 * 25 4 2 44 44 H 1.09001 * 117.49623 * 144.97907 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.5999 -0.1580 2.5280 6 16 1.6048 -1.0970 3.8920 7 8 0.8896 -2.2810 3.5666 8 8 1.2445 -0.2426 4.9687 9 6 3.2723 -1.5869 4.1820 10 6 4.1410 -0.7307 4.8326 11 6 5.4494 -1.1148 5.0596 12 6 5.8904 -2.3529 4.6314 13 6 7.3185 -2.7691 4.8735 14 6 7.4181 -3.4735 6.2020 15 1 6.5355 -3.6069 6.8101 16 6 8.6358 -3.9487 6.6407 17 7 9.7104 -3.7867 5.9001 18 14 8.7594 -4.8212 8.2879 19 1 8.5412 -6.2772 8.0943 20 1 10.1078 -4.5954 8.8676 21 1 7.7274 -4.2844 9.2110 22 6 5.0203 -3.2112 3.9855 23 6 3.7119 -2.8273 3.7589 24 6 2.2118 -2.2394 1.1678 25 6 3.4427 -1.3296 1.1906 26 1 -0.3634 -1.0236 0.0908 27 1 -0.3633 0.5904 0.8411 28 1 -0.3634 0.4332 -0.9318 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4423 -0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6768 1.9563 0.8899 33 1 1.3057 0.7651 2.5757 34 1 3.7977 0.2386 5.1627 35 1 6.1281 -0.4457 5.5675 36 1 7.6399 -3.4434 4.0797 37 1 7.9579 -1.8863 4.8814 38 1 10.5671 -4.1207 6.2089 39 1 5.3639 -4.1802 3.6546 40 1 3.0331 -3.4963 3.2510 41 1 1.9974 -2.8191 2.0656 42 1 1.9620 -2.7243 0.2241 43 1 4.0019 -1.2164 0.2619 44 1 4.0381 -1.3104 2.1034 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885208228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:12 Heat of formation + Delta-G solvation = -33.618449 kcal Electronic energy + Delta-G solvation = -25792.266547 eV Core-core repulsion = 22223.041268 eV Total energy + Delta-G solvation = -3569.225279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.57502 -38.69997 -37.13340 -35.81902 -33.95706 -33.52070 -32.24714 -31.53244 -30.59007 -27.46181 -27.41563 -23.76148 -23.34015 -22.58140 -22.23934 -20.94121 -20.30291 -19.15092 -17.85657 -17.64979 -16.46165 -16.16979 -15.27312 -15.23301 -15.03823 -14.63624 -14.41912 -14.28130 -13.87323 -13.85807 -13.56375 -13.17279 -12.79760 -12.56153 -12.45231 -12.32984 -12.09847 -12.06087 -11.90278 -11.80131 -11.50693 -11.39096 -11.29086 -11.13893 -10.98375 -10.93198 -10.84825 -10.52017 -10.48068 -10.33861 -9.75405 -9.66122 -9.11552 -8.59840 -8.54949 -8.38311 -6.18459 -4.23511 0.45624 1.28638 1.76950 2.94861 3.23495 3.30146 3.34460 3.53973 3.79159 4.07528 4.29061 4.36014 4.41023 4.46404 4.70006 4.74741 5.07564 5.08178 5.15276 5.19073 5.20381 5.39339 5.41491 5.54672 5.59924 5.65227 5.72664 5.77357 5.78936 5.82761 5.88617 6.00601 6.03411 6.09072 6.11312 6.21169 6.29878 6.48311 6.81200 6.84304 6.89171 7.26875 7.40366 7.57100 7.76620 8.11656 8.81305 9.41589 10.91537 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022791 B = 0.003251 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.240427 B = 8611.569746 C = 9077.811427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C -0.148 4.148 4 C 0.123 3.877 5 N -1.083 6.083 6 S 2.697 3.303 7 O -0.960 6.960 8 O -0.966 6.966 9 C -0.706 4.706 10 C -0.019 4.019 11 C -0.146 4.146 12 C 0.029 3.971 13 C 0.039 3.961 14 C -0.518 4.518 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.144 4.144 23 C -0.023 4.023 24 C -0.210 4.210 25 C -0.207 4.207 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.417 0.583 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.313 8.700 -13.191 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.075 4.075 3 C -0.205 4.205 4 C 0.033 3.967 5 N -0.839 5.839 6 S 2.790 3.210 7 O -0.950 6.950 8 O -0.956 6.956 9 C -0.796 4.796 10 C -0.039 4.039 11 C -0.165 4.165 12 C 0.029 3.971 13 C 0.003 3.997 14 C -0.556 4.556 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.163 4.163 23 C -0.042 4.042 24 C -0.248 4.248 25 C -0.246 4.246 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.253 0.747 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.833 8.294 -12.685 21.918 hybrid contribution 0.959 -0.175 0.865 1.303 sum -14.874 8.119 -11.821 20.661 Atomic orbital electron populations 1.21811 0.94494 1.02542 1.01645 1.20750 0.96148 0.96161 0.94486 1.21819 1.01643 0.95294 1.01771 1.20283 0.98129 0.93554 0.84724 1.54980 1.81499 1.26254 1.21147 1.01597 0.74372 0.73214 0.71803 1.93522 1.70359 1.47554 1.83584 1.93570 1.82954 1.67319 1.51749 1.30247 1.24360 1.05629 1.19314 1.20707 0.93136 0.97401 0.92636 1.21230 0.95489 0.97675 1.02073 1.21121 0.98773 0.91130 0.86108 1.18540 0.85570 0.97666 0.97963 1.20968 0.94455 1.37313 1.02847 0.92284 1.25000 0.95602 0.95892 0.97620 1.69943 0.99390 1.45958 1.37661 0.86482 0.77500 0.79952 0.83496 1.20438 1.21031 1.19695 1.21236 0.93033 1.00498 1.01548 1.20896 0.96224 0.93073 0.94030 1.24287 1.01666 0.92324 1.06559 1.24081 0.91738 1.03260 1.05529 0.92047 0.92524 0.92521 0.89659 0.92084 0.92385 0.92603 0.74735 0.85518 0.85352 0.94686 0.94729 0.92622 0.85284 0.84848 0.85505 0.87373 0.87894 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.03 37.16 0.34 -0.75 16 2 C -0.06 -0.42 2.80 -90.62 -0.25 -0.68 16 3 C -0.15 -1.01 9.10 37.16 0.34 -0.67 16 4 C 0.12 1.21 2.09 -131.82 -0.28 0.94 16 5 N -1.08 -11.37 5.68 0.54 0.00 -11.37 16 6 S 2.70 37.75 5.32 -107.50 -0.57 37.17 16 7 O -0.96 -15.10 14.55 -57.17 -0.83 -15.93 16 8 O -0.97 -15.87 17.50 -57.17 -1.00 -16.87 16 9 C -0.71 -10.85 3.85 -39.58 -0.15 -11.00 16 10 C -0.02 -0.31 9.52 -39.58 -0.38 -0.68 16 11 C -0.15 -2.64 9.70 -39.58 -0.38 -3.02 16 12 C 0.03 0.58 5.07 -104.62 -0.53 0.05 16 13 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 14 C -0.52 -13.92 9.09 -34.44 -0.31 -14.23 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 18 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 22 C -0.14 -2.59 9.70 -39.58 -0.38 -2.97 16 23 C -0.02 -0.36 6.68 -39.58 -0.26 -0.63 16 24 C -0.21 -2.26 8.68 -26.69 -0.23 -2.49 16 25 C -0.21 -2.21 9.18 -26.69 -0.24 -2.45 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.41 8.03 -51.93 -0.42 0.00 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.36 7.11 -51.93 -0.37 0.00 16 33 H 0.42 3.49 7.80 -34.47 -0.27 3.22 16 34 H 0.13 1.73 7.80 -52.49 -0.41 1.33 16 35 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 36 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.13 1.86 5.68 -52.49 -0.30 1.56 16 41 H 0.13 1.58 2.74 -51.93 -0.14 1.44 16 42 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 43 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.12 1.45 4.69 -51.93 -0.24 1.21 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -31.65 361.38 -10.56 -42.20 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.33 Total: 4.19 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: -2.98 Total: -36.22 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.74 Total: -36.00 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.83 Total: -32.80 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 37.75 SS G_CDS: -0.57 Total: 37.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.65 -10.56 -42.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885208228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.586 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds