Wall clock time and date at job start Tue Mar 31 2020 14:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47381 * 2 1 4 4 C 1.53000 * 109.47471 * 120.00588 * 2 1 3 5 5 H 1.08996 * 112.77722 * 50.07992 * 4 2 1 6 6 C 1.53240 * 113.38224 * 279.37318 * 4 2 1 7 7 C 1.53502 * 83.42885 * 219.29128 * 6 4 2 8 8 N 1.47064 * 113.46692 * 180.86074 * 4 2 1 9 9 S 1.65599 * 136.06200 * 321.93623 * 8 4 2 10 10 O 1.42104 * 106.39943 * 23.16635 * 9 8 4 11 11 O 1.42098 * 106.40507 * 156.08983 * 9 8 4 12 12 C 1.76205 * 107.21736 * 269.62908 * 9 8 4 13 13 C 1.38232 * 120.00235 * 269.72590 * 12 9 8 14 14 C 1.38232 * 120.00215 * 179.76622 * 13 12 9 15 15 C 1.38238 * 119.99772 * 0.48203 * 14 13 12 16 16 C 1.50700 * 119.99940 * 179.76730 * 15 14 13 17 17 C 1.50697 * 109.47134 * 270.02364 * 16 15 14 18 18 H 1.08001 * 120.00017 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99738 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00111 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99714 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47135 * 90.00041 * 21 19 17 23 23 H 1.48503 * 109.46932 * 210.00238 * 21 19 17 24 24 H 1.48500 * 109.47107 * 329.99747 * 21 19 17 25 25 C 1.38239 * 119.99931 * 359.79248 * 15 14 13 26 26 C 1.38229 * 120.00139 * 359.95486 * 25 15 14 27 27 H 1.09005 * 109.47212 * 299.99631 * 1 2 3 28 28 H 1.08997 * 109.47593 * 59.99763 * 1 2 3 29 29 H 1.09007 * 109.47332 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46808 * 240.00553 * 2 1 3 31 31 H 1.08994 * 109.47156 * 172.77107 * 3 2 1 32 32 H 1.08993 * 109.47321 * 292.77736 * 3 2 1 33 33 H 1.09002 * 109.46860 * 52.77036 * 3 2 1 34 34 H 1.08996 * 114.32519 * 105.65574 * 6 4 2 35 35 H 1.09003 * 114.19730 * 332.91263 * 6 4 2 36 36 H 1.08999 * 113.46313 * 271.11826 * 7 6 4 37 37 H 1.08994 * 113.52086 * 140.68645 * 7 6 4 38 38 H 1.07997 * 119.99636 * 359.97438 * 13 12 9 39 39 H 1.07997 * 120.00344 * 180.25456 * 14 13 12 40 40 H 1.08997 * 109.46964 * 30.02246 * 16 15 14 41 41 H 1.08996 * 109.46849 * 150.02308 * 16 15 14 42 42 H 0.97006 * 119.99800 * 179.97438 * 20 19 17 43 43 H 1.08001 * 119.99588 * 179.97438 * 25 15 14 44 44 H 1.08000 * 119.99874 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.5727 -1.6953 1.3944 6 6 2.0268 0.1555 2.5058 7 6 3.3597 -0.5482 2.7966 8 7 3.5070 -0.7550 1.3480 9 16 4.7694 -0.9380 0.2920 10 8 4.2822 -0.5534 -0.9863 11 8 5.8984 -0.3333 0.9076 12 6 5.1206 -2.6618 0.1926 13 6 6.0366 -3.2315 1.0570 14 6 6.3086 -4.5848 0.9822 15 6 5.6719 -5.3665 0.0365 16 6 5.9722 -6.8408 -0.0485 17 6 7.1185 -7.0659 -1.0006 18 1 7.5833 -6.2253 -1.4944 19 6 7.5745 -8.3448 -1.2404 20 7 7.0094 -9.3682 -0.6379 21 14 8.9959 -8.6237 -2.4199 22 1 10.2774 -8.5739 -1.6713 23 1 8.8504 -9.9536 -3.0646 24 1 8.9896 -7.5654 -3.4616 25 6 4.7600 -4.7957 -0.8317 26 6 4.4842 -3.4434 -0.7535 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1223 1.4451 0.1293 32 1 1.7861 1.9176 -0.9474 33 1 1.5749 1.9922 0.8183 34 1 1.2317 -0.0838 3.2119 35 1 2.1193 1.2232 2.3066 36 1 3.2474 -1.4755 3.3583 37 1 4.1167 0.1118 3.2200 38 1 6.5373 -2.6200 1.7930 39 1 7.0212 -5.0307 1.6603 40 1 6.2418 -7.2142 0.9394 41 1 5.0908 -7.3709 -0.4093 42 1 7.3300 -10.2680 -0.8069 43 1 4.2629 -5.4064 -1.5709 44 1 3.7715 -2.9976 -1.4315 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885217265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:16 Heat of formation + Delta-G solvation = -28.860904 kcal Electronic energy + Delta-G solvation = -25403.905009 eV Core-core repulsion = 21834.886033 eV Total energy + Delta-G solvation = -3569.018976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.18951 -38.78764 -37.10016 -35.73015 -34.48800 -33.67702 -31.55176 -30.57076 -28.78889 -27.47109 -27.33562 -25.98194 -23.71471 -22.33380 -22.08258 -20.86380 -20.37136 -18.60674 -17.45236 -17.34156 -16.45678 -16.21345 -15.94049 -15.14322 -14.97133 -14.52961 -14.37148 -14.06619 -13.93877 -13.66708 -13.37197 -13.10518 -12.89009 -12.73632 -12.61812 -12.24017 -12.13218 -11.96475 -11.89763 -11.73691 -11.68658 -11.49080 -11.28511 -11.19438 -10.93910 -10.91250 -10.86419 -10.51245 -10.48342 -10.34027 -9.75681 -9.67236 -9.21095 -8.58936 -8.54312 -8.36692 -6.17775 -4.22778 0.46436 1.34741 1.79757 2.96164 3.23960 3.30388 3.35009 3.83336 4.06251 4.09498 4.27847 4.36892 4.51747 4.61700 4.76318 4.93077 5.01250 5.14140 5.19727 5.24206 5.26872 5.30408 5.44073 5.45526 5.50231 5.62302 5.69526 5.72170 5.72778 5.91383 5.91687 5.94141 6.02026 6.09461 6.19523 6.25634 6.33705 6.40187 6.53042 6.84050 6.90435 7.28854 7.43332 7.58547 7.77374 8.12788 8.81982 9.42202 10.92266 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023744 B = 0.002949 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.959083 B = 9492.799819 C = 9634.417820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.140 4.140 4 C 0.160 3.840 5 H 0.093 0.907 6 C -0.153 4.153 7 C 0.124 3.876 8 N -1.036 6.036 9 S 2.714 3.286 10 O -0.955 6.955 11 O -0.962 6.962 12 C -0.708 4.708 13 C -0.025 4.025 14 C -0.146 4.146 15 C 0.025 3.975 16 C 0.040 3.960 17 C -0.518 4.518 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.146 4.146 26 C -0.023 4.023 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.128 0.872 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.725 18.777 7.105 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.197 4.197 4 C 0.054 3.946 5 H 0.111 0.889 6 C -0.193 4.193 7 C -0.001 4.001 8 N -0.874 5.874 9 S 2.809 3.191 10 O -0.945 6.945 11 O -0.953 6.953 12 C -0.797 4.797 13 C -0.044 4.044 14 C -0.165 4.165 15 C 0.025 3.975 16 C 0.003 3.997 17 C -0.556 4.556 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.165 4.165 26 C -0.042 4.042 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.078 19.223 6.520 24.147 hybrid contribution 0.957 -1.316 -0.585 1.729 sum -12.121 17.907 5.935 22.423 Atomic orbital electron populations 1.21736 0.94186 1.01983 1.02023 1.21447 0.96228 0.97275 0.98463 1.21823 1.00933 0.95434 1.01529 1.22230 0.78239 0.98691 0.95412 0.88877 1.23620 0.97581 1.00774 0.97295 1.22429 0.97359 0.99803 0.80539 1.60398 1.18986 1.87953 1.20076 1.01169 0.71596 0.73957 0.72340 1.93546 1.80509 1.82020 1.38462 1.93543 1.48760 1.75490 1.77516 1.30540 1.13396 1.25803 1.09952 1.20765 0.93058 0.95438 0.95160 1.21245 1.01400 0.93188 1.00638 1.21114 0.88111 0.99311 0.88955 1.18532 0.97905 0.84624 0.98633 1.20975 1.15934 0.92772 1.25902 0.92297 1.25005 0.97057 0.95919 0.96159 1.69949 1.41414 0.98987 1.42645 0.86474 0.82238 0.77657 0.81018 1.20431 1.21004 1.19685 1.21246 1.00276 0.94437 1.00534 1.20753 0.95594 0.93937 0.93950 0.92474 0.92287 0.92455 0.89091 0.93132 0.92475 0.92456 0.89640 0.88107 0.89891 0.90069 0.85456 0.85363 0.94732 0.94724 0.92624 0.85374 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.16 37.16 0.34 -0.61 16 2 C -0.11 -1.05 2.45 -90.62 -0.22 -1.27 16 3 C -0.14 -1.29 7.98 37.16 0.30 -1.00 16 4 C 0.16 1.38 3.89 -72.53 -0.28 1.10 16 5 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.15 -0.97 7.65 -26.35 -0.20 -1.17 16 7 C 0.12 1.00 8.73 -8.50 -0.07 0.93 16 8 N -1.04 -11.47 3.44 -118.03 -0.41 -11.87 16 9 S 2.71 40.56 5.94 -107.50 -0.64 39.92 16 10 O -0.95 -15.61 14.70 -57.17 -0.84 -16.45 16 11 O -0.96 -16.67 17.28 -57.17 -0.99 -17.66 16 12 C -0.71 -11.83 5.97 -39.58 -0.24 -12.06 16 13 C -0.02 -0.43 9.52 -39.59 -0.38 -0.80 16 14 C -0.15 -2.80 9.70 -39.58 -0.38 -3.19 16 15 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 16 C 0.04 0.99 5.10 -29.04 -0.15 0.84 16 17 C -0.52 -14.22 9.09 -34.44 -0.31 -14.53 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 21 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.15 -2.80 9.70 -39.58 -0.38 -3.18 16 26 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 1.02 7.03 -51.92 -0.36 0.66 16 31 H 0.05 0.56 6.67 -51.93 -0.35 0.21 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.40 6.55 -51.93 -0.34 0.06 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.62 5.71 -51.93 -0.30 0.32 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.13 1.92 7.61 -52.49 -0.40 1.52 16 39 H 0.13 2.33 8.06 -52.49 -0.42 1.90 16 40 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 41 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.13 2.32 8.06 -52.49 -0.42 1.89 16 44 H 0.13 1.88 7.62 -52.49 -0.40 1.48 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -32.78 369.17 -11.34 -44.12 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.76 Total: -0.82 kcal Atomic # 6 Polarization: -31.13 SS G_CDS: -2.99 Total: -34.12 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.33 Total: -36.82 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -1.83 Total: -34.11 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 40.56 SS G_CDS: -0.64 Total: 39.92 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.78 -11.34 -44.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885217265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.264 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds