Wall clock time and date at job start Tue Mar 31 2020 14:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47381 * 2 1 4 4 C 1.53000 * 109.47471 * 120.00588 * 2 1 3 5 5 H 1.08996 * 112.77722 * 50.07992 * 4 2 1 6 6 C 1.53240 * 113.38224 * 279.37318 * 4 2 1 7 7 C 1.53502 * 83.42885 * 219.29128 * 6 4 2 8 8 N 1.47064 * 113.46692 * 180.86074 * 4 2 1 9 9 S 1.65599 * 136.06200 * 321.93623 * 8 4 2 10 10 O 1.42104 * 106.39943 * 23.16635 * 9 8 4 11 11 O 1.42098 * 106.40507 * 156.08983 * 9 8 4 12 12 C 1.76205 * 107.21736 * 269.62908 * 9 8 4 13 13 C 1.38232 * 120.00235 * 269.72590 * 12 9 8 14 14 C 1.38232 * 120.00215 * 179.76622 * 13 12 9 15 15 C 1.38238 * 119.99772 * 0.48203 * 14 13 12 16 16 C 1.50700 * 119.99940 * 179.76730 * 15 14 13 17 17 C 1.50697 * 109.47134 * 270.02364 * 16 15 14 18 18 H 1.08001 * 120.00017 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99738 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00111 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99714 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47135 * 90.00041 * 21 19 17 23 23 H 1.48503 * 109.46932 * 210.00238 * 21 19 17 24 24 H 1.48500 * 109.47107 * 329.99747 * 21 19 17 25 25 C 1.38239 * 119.99931 * 359.79248 * 15 14 13 26 26 C 1.38229 * 120.00139 * 359.95486 * 25 15 14 27 27 H 1.09005 * 109.47212 * 299.99631 * 1 2 3 28 28 H 1.08997 * 109.47593 * 59.99763 * 1 2 3 29 29 H 1.09007 * 109.47332 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46808 * 240.00553 * 2 1 3 31 31 H 1.08994 * 109.47156 * 172.77107 * 3 2 1 32 32 H 1.08993 * 109.47321 * 292.77736 * 3 2 1 33 33 H 1.09002 * 109.46860 * 52.77036 * 3 2 1 34 34 H 1.08996 * 114.32519 * 105.65574 * 6 4 2 35 35 H 1.09003 * 114.19730 * 332.91263 * 6 4 2 36 36 H 1.08999 * 113.46313 * 271.11826 * 7 6 4 37 37 H 1.08994 * 113.52086 * 140.68645 * 7 6 4 38 38 H 1.07997 * 119.99636 * 359.97438 * 13 12 9 39 39 H 1.07997 * 120.00344 * 180.25456 * 14 13 12 40 40 H 1.08997 * 109.46964 * 30.02246 * 16 15 14 41 41 H 1.08996 * 109.46849 * 150.02308 * 16 15 14 42 42 H 0.97006 * 119.99800 * 179.97438 * 20 19 17 43 43 H 1.08001 * 119.99588 * 179.97438 * 25 15 14 44 44 H 1.08000 * 119.99874 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.5727 -1.6953 1.3944 6 6 2.0268 0.1555 2.5058 7 6 3.3597 -0.5482 2.7966 8 7 3.5070 -0.7550 1.3480 9 16 4.7694 -0.9380 0.2920 10 8 4.2822 -0.5534 -0.9863 11 8 5.8984 -0.3333 0.9076 12 6 5.1206 -2.6618 0.1926 13 6 6.0366 -3.2315 1.0570 14 6 6.3086 -4.5848 0.9822 15 6 5.6719 -5.3665 0.0365 16 6 5.9722 -6.8408 -0.0485 17 6 7.1185 -7.0659 -1.0006 18 1 7.5833 -6.2253 -1.4944 19 6 7.5745 -8.3448 -1.2404 20 7 7.0094 -9.3682 -0.6379 21 14 8.9959 -8.6237 -2.4199 22 1 10.2774 -8.5739 -1.6713 23 1 8.8504 -9.9536 -3.0646 24 1 8.9896 -7.5654 -3.4616 25 6 4.7600 -4.7957 -0.8317 26 6 4.4842 -3.4434 -0.7535 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1223 1.4451 0.1293 32 1 1.7861 1.9176 -0.9474 33 1 1.5749 1.9922 0.8183 34 1 1.2317 -0.0838 3.2119 35 1 2.1193 1.2232 2.3066 36 1 3.2474 -1.4755 3.3583 37 1 4.1167 0.1118 3.2200 38 1 6.5373 -2.6200 1.7930 39 1 7.0212 -5.0307 1.6603 40 1 6.2418 -7.2142 0.9394 41 1 5.0908 -7.3709 -0.4093 42 1 7.3300 -10.2680 -0.8069 43 1 4.2629 -5.4064 -1.5709 44 1 3.7715 -2.9976 -1.4315 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885217265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:15 Heat of formation + Delta-G solvation = -48.511198 kcal Electronic energy + Delta-G solvation = -25404.757110 eV Core-core repulsion = 21834.886033 eV Total energy + Delta-G solvation = -3569.871077 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.86986 -40.27943 -38.34849 -36.98454 -35.63080 -35.15520 -33.35336 -32.02059 -29.56339 -29.24432 -28.00209 -26.61126 -25.61505 -23.78191 -22.78004 -22.41790 -21.18140 -19.76114 -18.68895 -18.53226 -18.22950 -17.23672 -16.92696 -16.67986 -16.17681 -16.02762 -15.60906 -15.25848 -14.86324 -14.70036 -14.61813 -14.51335 -14.04624 -13.94495 -13.51049 -13.44273 -13.38731 -13.23350 -13.20496 -13.17525 -12.73190 -12.70542 -12.68722 -12.36871 -12.21729 -12.09574 -11.86048 -11.80051 -11.69681 -11.57166 -11.43501 -11.00025 -10.68003 -10.12612 -10.02771 -9.89151 -8.29830 -6.42853 -0.69296 -0.10716 0.33358 1.36552 1.36652 1.48407 1.91179 2.32583 2.56071 2.77954 3.02680 3.09207 3.58917 3.76822 3.83565 3.90864 3.96952 4.10819 4.14430 4.27861 4.37997 4.41750 4.46449 4.65776 4.74583 4.76131 4.81126 4.85261 4.88565 4.91463 5.04902 5.10339 5.13508 5.16603 5.22049 5.22194 5.27849 5.35329 5.38748 5.42087 5.56854 5.64030 5.72205 5.80814 5.87378 6.06484 6.68547 7.26314 8.80294 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023744 B = 0.002949 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.959083 B = 9492.799819 C = 9634.417820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C -0.143 4.143 4 C 0.152 3.848 5 H 0.107 0.893 6 C -0.133 4.133 7 C 0.114 3.886 8 N -1.038 6.038 9 S 2.731 3.269 10 O -0.972 6.972 11 O -0.987 6.987 12 C -0.707 4.707 13 C -0.024 4.024 14 C -0.154 4.154 15 C -0.004 4.004 16 C 0.050 3.950 17 C -0.536 4.536 18 H 0.052 0.948 19 C 0.011 3.989 20 N -0.924 5.924 21 Si 0.965 3.035 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 C -0.154 4.154 26 C -0.020 4.020 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.151 0.849 39 H 0.131 0.869 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.268 0.732 43 H 0.131 0.869 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.902 20.704 7.915 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.138 4.138 3 C -0.200 4.200 4 C 0.047 3.953 5 H 0.125 0.875 6 C -0.173 4.173 7 C -0.010 4.010 8 N -0.879 5.879 9 S 2.825 3.175 10 O -0.962 6.962 11 O -0.978 6.978 12 C -0.793 4.793 13 C -0.043 4.043 14 C -0.172 4.172 15 C -0.004 4.004 16 C 0.013 3.987 17 C -0.574 4.574 18 H 0.070 0.930 19 C -0.189 4.189 20 N -0.563 5.563 21 Si 0.789 3.211 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.193 1.193 25 C -0.173 4.173 26 C -0.039 4.039 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.137 0.863 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.168 0.832 39 H 0.149 0.851 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.077 0.923 43 H 0.149 0.851 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.244 21.126 7.326 26.512 hybrid contribution 1.202 -1.788 -0.766 2.287 sum -13.042 19.338 6.560 24.230 Atomic orbital electron populations 1.21705 0.92204 1.02582 1.02940 1.21470 0.97891 0.96835 0.97653 1.21871 0.99708 0.96027 1.02418 1.22595 0.76314 1.00056 0.96342 0.87521 1.23595 0.97236 1.00363 0.96092 1.22807 0.98531 1.01042 0.78644 1.60276 1.19324 1.86916 1.21366 1.00599 0.71777 0.72834 0.72323 1.93522 1.80785 1.81805 1.40122 1.93506 1.50791 1.75508 1.77962 1.31079 1.12183 1.27234 1.08794 1.20996 0.92961 0.94670 0.95635 1.21310 1.01449 0.94105 1.00383 1.20832 0.90650 0.97498 0.91422 1.18254 0.96347 0.87314 0.96815 1.21283 1.16824 0.92854 1.26444 0.92957 1.25863 0.99619 0.95622 0.97754 1.70052 1.42877 0.99462 1.43958 0.85452 0.79045 0.77760 0.78861 1.19604 1.20126 1.19340 1.21316 1.00073 0.95583 1.00334 1.20977 0.95729 0.92980 0.94201 0.90520 0.92444 0.92034 0.91823 0.95293 0.92907 0.89895 0.86272 0.87687 0.88278 0.89834 0.83175 0.85102 0.96748 0.96736 0.92294 0.85132 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.16 71.98 0.66 -0.80 16 2 C -0.12 -1.93 2.45 -10.80 -0.03 -1.95 16 3 C -0.14 -2.38 7.98 71.98 0.57 -1.81 16 4 C 0.15 2.17 3.89 41.71 0.16 2.33 16 5 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 6 C -0.13 -1.13 7.65 30.84 0.24 -0.89 16 7 C 0.11 1.48 8.73 83.18 0.73 2.21 16 8 N -1.04 -20.72 3.44 -527.34 -1.82 -22.53 16 9 S 2.73 78.57 5.94 -56.49 -0.34 78.23 16 10 O -0.97 -31.18 14.70 -128.00 -1.88 -33.06 16 11 O -0.99 -33.16 17.28 -128.00 -2.21 -35.37 16 12 C -0.71 -22.98 5.97 22.27 0.13 -22.85 16 13 C -0.02 -0.80 9.52 22.27 0.21 -0.58 16 14 C -0.15 -5.99 9.70 22.27 0.22 -5.78 16 15 C 0.00 -0.16 5.07 -19.86 -0.10 -0.26 16 16 C 0.05 2.59 5.10 29.10 0.15 2.73 16 17 C -0.54 -30.36 9.09 25.60 0.23 -30.12 16 18 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 19 C 0.01 0.60 5.46 84.66 0.46 1.06 16 20 N -0.92 -54.46 13.29 21.45 0.28 -54.18 16 21 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 25 C -0.15 -6.01 9.70 22.27 0.22 -5.79 16 26 C -0.02 -0.66 9.52 22.27 0.21 -0.45 16 27 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.06 1.38 7.03 -2.38 -0.02 1.36 16 31 H 0.03 0.60 6.67 -2.39 -0.02 0.58 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 0.91 6.55 -2.39 -0.02 0.89 16 34 H 0.12 0.33 8.14 -2.39 -0.02 0.32 16 35 H 0.10 0.85 5.71 -2.39 -0.01 0.83 16 36 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.15 4.32 7.61 -2.91 -0.02 4.30 16 39 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 40 H 0.01 0.78 8.09 -2.39 -0.02 0.76 16 41 H 0.01 0.79 8.09 -2.39 -0.02 0.77 16 42 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 43 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 44 H 0.15 4.29 7.62 -2.91 -0.02 4.27 16 Total: -1.00 -72.35 369.17 1.11 -71.23 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.98 Total: 12.57 kcal Atomic # 6 Polarization: -67.03 SS G_CDS: 4.06 Total: -62.96 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -1.53 Total: -76.71 kcal Atomic # 8 Polarization: -64.34 SS G_CDS: -4.09 Total: -68.43 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 78.57 SS G_CDS: -0.34 Total: 78.23 kcal Total: -72.35 1.11 -71.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885217265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.722 kcal (2) G-P(sol) polarization free energy of solvation -72.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds