Wall clock time and date at job start Tue Mar 31 2020 14:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47326 * 2 1 4 4 C 1.53006 * 109.47481 * 120.00111 * 2 1 3 5 5 H 1.08995 * 112.78659 * 188.83169 * 4 2 1 6 6 C 1.53760 * 113.54882 * 319.68800 * 4 2 1 7 7 C 1.53490 * 83.25959 * 140.98051 * 6 4 2 8 8 N 1.47067 * 113.46295 * 58.04167 * 4 2 1 9 9 S 1.65597 * 136.05569 * 38.14438 * 8 4 2 10 10 O 1.42098 * 106.40605 * 341.52809 * 9 8 4 11 11 O 1.42111 * 106.40141 * 208.60820 * 9 8 4 12 12 C 1.76200 * 107.21785 * 95.06955 * 9 8 4 13 13 C 1.38242 * 119.99966 * 84.94761 * 12 9 8 14 14 C 1.38238 * 119.99514 * 179.72530 * 13 12 9 15 15 C 1.38229 * 120.00154 * 0.27612 * 14 13 12 16 16 C 1.50705 * 119.99996 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47080 * 89.99657 * 16 15 14 18 18 H 1.08010 * 120.00134 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00145 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99927 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00294 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47130 * 59.99816 * 21 19 17 23 23 H 1.48500 * 109.47639 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47215 * 300.00534 * 21 19 17 25 25 C 1.38236 * 120.00192 * 359.95619 * 15 14 13 26 26 C 1.38228 * 120.00128 * 359.97438 * 25 15 14 27 27 H 1.08998 * 109.47357 * 67.09792 * 1 2 3 28 28 H 1.09005 * 109.47495 * 187.09697 * 1 2 3 29 29 H 1.08999 * 109.47663 * 307.10023 * 1 2 3 30 30 H 1.09000 * 109.47703 * 240.00579 * 2 1 3 31 31 H 1.08998 * 109.47246 * 184.68597 * 3 2 1 32 32 H 1.08995 * 109.47165 * 304.69458 * 3 2 1 33 33 H 1.09006 * 109.47114 * 64.68899 * 3 2 1 34 34 H 1.09006 * 114.39512 * 27.42140 * 6 4 2 35 35 H 1.09004 * 114.08754 * 254.52833 * 6 4 2 36 36 H 1.08998 * 113.46911 * 218.97875 * 7 6 4 37 37 H 1.09007 * 113.46340 * 88.54046 * 7 6 4 38 38 H 1.07994 * 120.00323 * 359.97438 * 13 12 9 39 39 H 1.08000 * 119.99211 * 180.25343 * 14 13 12 40 40 H 1.08992 * 109.47169 * 209.99942 * 16 15 14 41 41 H 1.08998 * 109.46832 * 330.00616 * 16 15 14 42 42 H 0.97002 * 119.99848 * 179.97438 * 20 19 17 43 43 H 1.08006 * 119.99717 * 180.02562 * 25 15 14 44 44 H 1.07995 * 120.00507 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1169 -0.6211 1.3844 6 6 1.2315 -0.4003 2.5171 7 6 1.4430 -1.8919 2.8111 8 7 1.5620 -2.1076 1.3612 9 16 1.2863 -3.3618 0.3157 10 8 1.1953 -2.7900 -0.9820 11 8 0.2516 -4.1460 0.8937 12 6 2.7325 -4.3683 0.3156 13 6 2.8948 -5.3453 1.2802 14 6 4.0268 -6.1387 1.2766 15 6 4.9991 -5.9514 0.3121 16 6 6.2334 -6.8160 0.3086 17 6 5.9875 -8.0392 -0.5366 18 1 5.0330 -8.1766 -1.0230 19 6 6.9814 -8.9824 -0.6898 20 7 8.1438 -8.8149 -0.0980 21 14 6.6769 -10.4983 -1.7380 22 1 6.3588 -10.0833 -3.1280 23 1 7.8935 -11.3498 -1.7424 24 1 5.5363 -11.2667 -1.1777 25 6 4.8390 -4.9713 -0.6496 26 6 3.7064 -4.1789 -0.6470 27 1 -0.3634 0.3999 -0.9466 28 1 -0.3634 -1.0198 0.1270 29 1 -0.3634 0.6199 0.8196 30 1 1.8933 -0.5137 -0.8900 31 1 3.1267 1.4436 -0.0840 32 1 1.6096 1.9800 -0.8449 33 1 1.7468 1.9315 0.9291 34 1 0.1935 -0.1243 2.3313 35 1 1.7399 0.2686 3.2115 36 1 0.5711 -2.3754 3.2518 37 1 2.3626 -2.1004 3.3579 38 1 2.1354 -5.4913 2.0340 39 1 4.1516 -6.9046 2.0278 40 1 7.0706 -6.2523 -0.1028 41 1 6.4666 -7.1204 1.3289 42 1 8.8429 -9.4787 -0.2055 43 1 5.5986 -4.8253 -1.4034 44 1 3.5812 -3.4134 -1.3985 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885217266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:19 Heat of formation + Delta-G solvation = -28.812883 kcal Electronic energy + Delta-G solvation = -25381.868672 eV Core-core repulsion = 21812.851778 eV Total energy + Delta-G solvation = -3569.016894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16297 -38.78939 -37.09606 -35.73100 -34.49611 -33.67625 -31.55228 -30.57318 -28.78148 -27.47900 -27.33330 -25.97503 -23.71347 -22.33584 -22.09205 -20.86698 -20.37133 -18.61442 -17.45463 -17.33569 -16.45365 -16.22879 -15.90871 -15.15356 -14.96630 -14.54268 -14.37553 -14.06278 -13.92762 -13.67463 -13.38655 -13.10614 -12.89245 -12.75000 -12.60887 -12.23776 -12.14325 -11.95534 -11.89868 -11.75350 -11.69252 -11.48824 -11.29667 -11.19031 -10.95013 -10.90304 -10.86875 -10.51831 -10.47999 -10.33734 -9.76897 -9.67637 -9.21358 -8.59040 -8.53961 -8.36852 -6.17550 -4.22694 0.46451 1.34497 1.79518 2.95876 3.25829 3.29844 3.33520 3.82374 4.05761 4.09635 4.28175 4.36961 4.51275 4.61287 4.75335 4.92234 5.00836 5.13764 5.19535 5.24329 5.26410 5.29973 5.43405 5.44646 5.49779 5.62057 5.68745 5.71526 5.72144 5.90755 5.91240 5.93533 6.01672 6.08162 6.19304 6.25451 6.33481 6.39574 6.52847 6.83884 6.90368 7.28711 7.43198 7.58544 7.77357 8.12853 8.81788 9.42245 10.92469 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024696 B = 0.002912 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.493725 B = 9614.206416 C = 9711.161664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C -0.141 4.141 4 C 0.160 3.840 5 H 0.093 0.907 6 C -0.152 4.152 7 C 0.123 3.877 8 N -1.036 6.036 9 S 2.714 3.286 10 O -0.956 6.956 11 O -0.961 6.961 12 C -0.708 4.708 13 C -0.025 4.025 14 C -0.146 4.146 15 C 0.025 3.975 16 C 0.040 3.960 17 C -0.519 4.519 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.146 4.146 26 C -0.023 4.023 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.265 0.735 43 H 0.128 0.872 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.154 20.336 5.925 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.135 4.135 3 C -0.199 4.199 4 C 0.055 3.945 5 H 0.111 0.889 6 C -0.192 4.192 7 C -0.002 4.002 8 N -0.874 5.874 9 S 2.809 3.191 10 O -0.946 6.946 11 O -0.952 6.952 12 C -0.797 4.797 13 C -0.044 4.044 14 C -0.164 4.164 15 C 0.025 3.975 16 C 0.003 3.997 17 C -0.557 4.557 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.165 4.165 26 C -0.043 4.043 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.785 19.905 5.313 24.247 hybrid contribution 0.822 -1.448 -0.462 1.728 sum -11.963 18.457 4.851 22.524 Atomic orbital electron populations 1.21824 0.94856 1.01481 1.01597 1.21453 0.96759 0.96710 0.98551 1.21731 1.01073 0.95091 1.02011 1.22337 0.98547 0.78320 0.95342 0.88875 1.23699 1.02119 0.96177 0.97168 1.22435 1.02031 0.95243 0.80539 1.60423 1.81916 1.25213 1.19830 1.01190 0.73979 0.71599 0.72336 1.93536 1.86682 1.77612 1.36805 1.93553 1.53795 1.69092 1.78776 1.30550 1.22892 1.18051 1.08206 1.20743 0.96491 0.92236 0.94962 1.21238 0.94225 1.00310 1.00669 1.21112 0.96403 0.90461 0.89523 1.18527 0.89006 0.93369 0.98752 1.20939 0.99861 1.04335 1.30539 0.92350 1.25000 0.94938 0.98391 0.95777 1.69937 1.04126 1.35793 1.43152 0.86533 0.77675 0.82317 0.80827 1.20024 1.21077 1.20022 1.21252 0.98264 0.96971 0.99997 1.20777 0.91821 0.97084 0.94593 0.92441 0.93318 0.92380 0.88964 0.92467 0.92276 0.92462 0.88112 0.89661 0.90040 0.89864 0.85614 0.85365 0.94727 0.94734 0.92562 0.85357 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.09 37.15 0.30 -1.00 16 2 C -0.12 -1.05 2.46 -90.62 -0.22 -1.27 16 3 C -0.14 -0.94 9.17 37.16 0.34 -0.60 16 4 C 0.16 1.38 3.90 -72.25 -0.28 1.10 16 5 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 6 C -0.15 -0.96 7.59 -26.08 -0.20 -1.16 16 7 C 0.12 0.99 8.72 -8.51 -0.07 0.92 16 8 N -1.04 -11.48 3.42 -117.74 -0.40 -11.88 16 9 S 2.71 40.67 5.81 -107.50 -0.62 40.05 16 10 O -0.96 -15.63 14.77 -57.17 -0.84 -16.48 16 11 O -0.96 -16.76 17.42 -57.17 -1.00 -17.76 16 12 C -0.71 -11.85 5.97 -39.58 -0.24 -12.09 16 13 C -0.02 -0.43 9.52 -39.58 -0.38 -0.80 16 14 C -0.15 -2.79 9.70 -39.58 -0.38 -3.18 16 15 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 16 C 0.04 1.00 5.10 -29.03 -0.15 0.85 16 17 C -0.52 -14.25 9.09 -34.44 -0.31 -14.57 16 18 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 21 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.15 -2.80 9.70 -39.59 -0.38 -3.19 16 26 C -0.02 -0.40 9.53 -39.58 -0.38 -0.78 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.54 6.68 -51.93 -0.35 0.19 16 29 H 0.06 0.41 6.55 -51.93 -0.34 0.07 16 30 H 0.09 1.04 6.99 -51.93 -0.36 0.67 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.31 8.04 -51.93 -0.42 -0.11 16 34 H 0.10 0.62 5.79 -51.93 -0.30 0.32 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.13 1.87 7.74 -52.49 -0.41 1.46 16 39 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 41 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 43 H 0.13 2.33 8.06 -52.48 -0.42 1.91 16 44 H 0.13 1.93 7.52 -52.49 -0.39 1.54 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -32.81 369.26 -11.32 -44.13 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.75 Total: -0.80 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: -2.98 Total: -34.15 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.33 Total: -36.85 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.84 Total: -34.23 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 40.67 SS G_CDS: -0.62 Total: 40.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.81 -11.32 -44.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885217266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.319 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds