Wall clock time and date at job start Tue Mar 31 2020 14:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47326 * 2 1 4 4 C 1.53006 * 109.47481 * 120.00111 * 2 1 3 5 5 H 1.08995 * 112.78659 * 188.83169 * 4 2 1 6 6 C 1.53760 * 113.54882 * 319.68800 * 4 2 1 7 7 C 1.53490 * 83.25959 * 140.98051 * 6 4 2 8 8 N 1.47067 * 113.46295 * 58.04167 * 4 2 1 9 9 S 1.65597 * 136.05569 * 38.14438 * 8 4 2 10 10 O 1.42098 * 106.40605 * 341.52809 * 9 8 4 11 11 O 1.42111 * 106.40141 * 208.60820 * 9 8 4 12 12 C 1.76200 * 107.21785 * 95.06955 * 9 8 4 13 13 C 1.38242 * 119.99966 * 84.94761 * 12 9 8 14 14 C 1.38238 * 119.99514 * 179.72530 * 13 12 9 15 15 C 1.38229 * 120.00154 * 0.27612 * 14 13 12 16 16 C 1.50705 * 119.99996 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47080 * 89.99657 * 16 15 14 18 18 H 1.08010 * 120.00134 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00145 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99927 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00294 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47130 * 59.99816 * 21 19 17 23 23 H 1.48500 * 109.47639 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47215 * 300.00534 * 21 19 17 25 25 C 1.38236 * 120.00192 * 359.95619 * 15 14 13 26 26 C 1.38228 * 120.00128 * 359.97438 * 25 15 14 27 27 H 1.08998 * 109.47357 * 67.09792 * 1 2 3 28 28 H 1.09005 * 109.47495 * 187.09697 * 1 2 3 29 29 H 1.08999 * 109.47663 * 307.10023 * 1 2 3 30 30 H 1.09000 * 109.47703 * 240.00579 * 2 1 3 31 31 H 1.08998 * 109.47246 * 184.68597 * 3 2 1 32 32 H 1.08995 * 109.47165 * 304.69458 * 3 2 1 33 33 H 1.09006 * 109.47114 * 64.68899 * 3 2 1 34 34 H 1.09006 * 114.39512 * 27.42140 * 6 4 2 35 35 H 1.09004 * 114.08754 * 254.52833 * 6 4 2 36 36 H 1.08998 * 113.46911 * 218.97875 * 7 6 4 37 37 H 1.09007 * 113.46340 * 88.54046 * 7 6 4 38 38 H 1.07994 * 120.00323 * 359.97438 * 13 12 9 39 39 H 1.08000 * 119.99211 * 180.25343 * 14 13 12 40 40 H 1.08992 * 109.47169 * 209.99942 * 16 15 14 41 41 H 1.08998 * 109.46832 * 330.00616 * 16 15 14 42 42 H 0.97002 * 119.99848 * 179.97438 * 20 19 17 43 43 H 1.08006 * 119.99717 * 180.02562 * 25 15 14 44 44 H 1.07995 * 120.00507 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1169 -0.6211 1.3844 6 6 1.2315 -0.4003 2.5171 7 6 1.4430 -1.8919 2.8111 8 7 1.5620 -2.1076 1.3612 9 16 1.2863 -3.3618 0.3157 10 8 1.1953 -2.7900 -0.9820 11 8 0.2516 -4.1460 0.8937 12 6 2.7325 -4.3683 0.3156 13 6 2.8948 -5.3453 1.2802 14 6 4.0268 -6.1387 1.2766 15 6 4.9991 -5.9514 0.3121 16 6 6.2334 -6.8160 0.3086 17 6 5.9875 -8.0392 -0.5366 18 1 5.0330 -8.1766 -1.0230 19 6 6.9814 -8.9824 -0.6898 20 7 8.1438 -8.8149 -0.0980 21 14 6.6769 -10.4983 -1.7380 22 1 6.3588 -10.0833 -3.1280 23 1 7.8935 -11.3498 -1.7424 24 1 5.5363 -11.2667 -1.1777 25 6 4.8390 -4.9713 -0.6496 26 6 3.7064 -4.1789 -0.6470 27 1 -0.3634 0.3999 -0.9466 28 1 -0.3634 -1.0198 0.1270 29 1 -0.3634 0.6199 0.8196 30 1 1.8933 -0.5137 -0.8900 31 1 3.1267 1.4436 -0.0840 32 1 1.6096 1.9800 -0.8449 33 1 1.7468 1.9315 0.9291 34 1 0.1935 -0.1243 2.3313 35 1 1.7399 0.2686 3.2115 36 1 0.5711 -2.3754 3.2518 37 1 2.3626 -2.1004 3.3579 38 1 2.1354 -5.4913 2.0340 39 1 4.1516 -6.9046 2.0278 40 1 7.0706 -6.2523 -0.1028 41 1 6.4666 -7.1204 1.3289 42 1 8.8429 -9.4787 -0.2055 43 1 5.5986 -4.8253 -1.4034 44 1 3.5812 -3.4134 -1.3985 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885217266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:18 Heat of formation + Delta-G solvation = -48.513151 kcal Electronic energy + Delta-G solvation = -25382.722940 eV Core-core repulsion = 21812.851778 eV Total energy + Delta-G solvation = -3569.871162 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.84319 -40.28117 -38.34729 -36.98791 -35.63182 -35.16074 -33.35398 -32.02284 -29.55451 -29.24705 -28.00405 -26.60371 -25.61386 -23.78397 -22.78395 -22.42442 -21.18131 -19.76931 -18.68794 -18.53129 -18.23004 -17.23683 -16.92619 -16.67298 -16.17109 -16.03169 -15.62741 -15.24698 -14.86019 -14.70421 -14.60779 -14.51496 -14.06128 -13.94529 -13.51856 -13.44088 -13.39751 -13.24373 -13.20104 -13.17218 -12.73211 -12.69958 -12.68356 -12.38291 -12.21408 -12.09624 -11.87578 -11.79938 -11.71191 -11.57910 -11.43390 -10.99689 -10.67668 -10.13170 -10.02960 -9.89001 -8.29664 -6.42844 -0.69433 -0.11034 0.33130 1.36565 1.38239 1.46850 1.90863 2.32609 2.55884 2.76935 3.02778 3.10241 3.57656 3.76260 3.83844 3.90627 3.96629 4.10623 4.13545 4.27217 4.37518 4.41615 4.45956 4.65704 4.74118 4.75948 4.80985 4.85070 4.88423 4.90325 5.04701 5.09779 5.13131 5.15771 5.21782 5.22007 5.27677 5.33975 5.38618 5.41702 5.56996 5.63902 5.71622 5.80726 5.87221 6.06437 6.68349 7.26291 8.80274 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024696 B = 0.002912 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.493725 B = 9614.206416 C = 9711.161664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.136 4.136 4 C 0.152 3.848 5 H 0.107 0.893 6 C -0.132 4.132 7 C 0.113 3.887 8 N -1.037 6.037 9 S 2.731 3.269 10 O -0.973 6.973 11 O -0.987 6.987 12 C -0.707 4.707 13 C -0.022 4.022 14 C -0.153 4.153 15 C -0.004 4.004 16 C 0.050 3.950 17 C -0.538 4.538 18 H 0.052 0.948 19 C 0.011 3.989 20 N -0.924 5.924 21 Si 0.964 3.036 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.154 4.154 26 C -0.021 4.021 27 H 0.053 0.947 28 H 0.025 0.975 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.151 0.849 39 H 0.132 0.868 40 H 0.014 0.986 41 H 0.015 0.985 42 H 0.268 0.732 43 H 0.130 0.870 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.554 22.152 6.734 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C -0.194 4.194 4 C 0.047 3.953 5 H 0.125 0.875 6 C -0.172 4.172 7 C -0.012 4.012 8 N -0.878 5.878 9 S 2.824 3.176 10 O -0.963 6.963 11 O -0.977 6.977 12 C -0.793 4.793 13 C -0.042 4.042 14 C -0.172 4.172 15 C -0.004 4.004 16 C 0.013 3.987 17 C -0.575 4.575 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.788 3.212 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.173 4.173 26 C -0.040 4.040 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.169 0.831 39 H 0.149 0.851 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.077 0.923 43 H 0.148 0.852 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.169 21.703 6.118 26.631 hybrid contribution 1.187 -1.845 -0.653 2.289 sum -12.982 19.858 5.465 24.346 Atomic orbital electron populations 1.21875 0.95126 1.00555 1.02530 1.21473 0.96617 0.98089 0.97719 1.21699 1.01227 0.93396 1.03074 1.22710 0.99834 0.76468 0.96298 0.87496 1.23675 1.02299 0.95305 0.95880 1.22817 1.03127 0.96588 0.78621 1.60304 1.81672 1.24711 1.21157 1.00625 0.73086 0.71561 0.72324 1.93511 1.86661 1.77681 1.38487 1.93516 1.54496 1.70480 1.79244 1.31087 1.23221 1.17848 1.07172 1.20989 0.96113 0.91505 0.95549 1.21311 0.94587 1.00934 1.00383 1.20829 0.95970 0.91715 0.91881 1.18250 0.90339 0.93215 0.96895 1.21261 0.99708 1.05628 1.30938 0.92938 1.25860 0.94624 1.01423 0.96919 1.70044 1.04954 1.36962 1.44385 0.85515 0.77894 0.78608 0.79161 1.19412 1.20178 1.19381 1.21317 0.99297 0.96996 0.99709 1.20990 0.91017 0.96942 0.95076 0.92788 0.95537 0.89844 0.91756 0.92114 0.92345 0.90472 0.87708 0.86266 0.89785 0.88230 0.83128 0.85054 0.96777 0.96716 0.92282 0.85164 0.83087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.09 71.98 0.58 -1.82 16 2 C -0.12 -1.94 2.46 -10.79 -0.03 -1.96 16 3 C -0.14 -1.44 9.17 71.98 0.66 -0.78 16 4 C 0.15 2.17 3.90 41.88 0.16 2.33 16 5 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 6 C -0.13 -1.11 7.59 31.02 0.24 -0.88 16 7 C 0.11 1.46 8.72 83.18 0.73 2.18 16 8 N -1.04 -20.74 3.42 -526.42 -1.80 -22.54 16 9 S 2.73 78.84 5.81 -56.49 -0.33 78.52 16 10 O -0.97 -31.28 14.77 -128.00 -1.89 -33.17 16 11 O -0.99 -33.38 17.42 -128.00 -2.23 -35.61 16 12 C -0.71 -23.02 5.97 22.27 0.13 -22.89 16 13 C -0.02 -0.75 9.52 22.27 0.21 -0.54 16 14 C -0.15 -5.96 9.70 22.27 0.22 -5.74 16 15 C 0.00 -0.16 5.07 -19.87 -0.10 -0.26 16 16 C 0.05 2.60 5.10 29.10 0.15 2.75 16 17 C -0.54 -30.44 9.09 25.60 0.23 -30.21 16 18 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 19 C 0.01 0.62 5.46 84.65 0.46 1.08 16 20 N -0.92 -54.50 13.29 21.45 0.28 -54.22 16 21 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 C -0.15 -6.04 9.70 22.27 0.22 -5.82 16 26 C -0.02 -0.71 9.53 22.27 0.21 -0.50 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.03 0.55 6.68 -2.38 -0.02 0.53 16 29 H 0.08 0.92 6.55 -2.39 -0.02 0.91 16 30 H 0.06 1.40 6.99 -2.39 -0.02 1.39 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.52 8.04 -2.38 -0.02 0.50 16 34 H 0.10 0.85 5.79 -2.38 -0.01 0.83 16 35 H 0.12 0.32 8.14 -2.39 -0.02 0.31 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.15 4.23 7.74 -2.91 -0.02 4.21 16 39 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.01 0.77 8.08 -2.39 -0.02 0.75 16 41 H 0.01 0.80 8.09 -2.39 -0.02 0.78 16 42 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 44 H 0.15 4.38 7.52 -2.91 -0.02 4.36 16 Total: -1.00 -72.48 369.26 1.12 -71.36 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.98 Total: 12.66 kcal Atomic # 6 Polarization: -67.12 SS G_CDS: 4.07 Total: -63.05 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -1.51 Total: -76.76 kcal Atomic # 8 Polarization: -64.66 SS G_CDS: -4.12 Total: -68.78 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 78.84 SS G_CDS: -0.33 Total: 78.52 kcal Total: -72.48 1.12 -71.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885217266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.850 kcal (2) G-P(sol) polarization free energy of solvation -72.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds