Wall clock time and date at job start Tue Mar 31 2020 14:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50694 * 120.00071 * 2 1 4 4 C 1.53000 * 109.47148 * 0.02562 * 3 2 1 5 5 C 1.53004 * 109.47104 * 240.00060 * 3 2 1 6 6 C 1.52998 * 109.47279 * 120.00238 * 3 2 1 7 7 N 1.46501 * 109.47437 * 179.97438 * 6 3 2 8 8 S 1.65599 * 120.00418 * 164.99857 * 7 6 3 9 9 O 1.42100 * 106.40241 * 311.46108 * 8 7 6 10 10 O 1.42096 * 106.40379 * 178.53729 * 8 7 6 11 11 C 1.76199 * 107.21658 * 65.00023 * 8 7 6 12 12 C 1.38238 * 120.00251 * 269.72679 * 11 8 7 13 13 C 1.38228 * 120.00121 * 179.76592 * 12 11 8 14 14 C 1.38234 * 120.00010 * 0.50740 * 13 12 11 15 15 C 1.50706 * 119.99834 * 179.72215 * 14 13 12 16 16 C 1.50701 * 109.47197 * 270.02419 * 15 14 13 17 17 H 1.07992 * 120.00089 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99824 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00175 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00076 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46716 * 59.99912 * 20 18 16 22 22 H 1.48496 * 109.47422 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47125 * 300.00594 * 20 18 16 24 24 C 1.38229 * 119.99860 * 359.74632 * 14 13 12 25 25 C 1.38234 * 120.00019 * 90.00010 * 11 8 7 26 26 H 1.08003 * 119.99864 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00055 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.00055 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46976 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.46930 * 299.99640 * 4 3 2 31 31 H 1.08996 * 109.47232 * 60.00243 * 4 3 2 32 32 H 1.08995 * 109.47406 * 299.99617 * 5 3 2 33 33 H 1.08995 * 109.46794 * 60.00140 * 5 3 2 34 34 H 1.09004 * 109.46995 * 180.02562 * 5 3 2 35 35 H 1.09005 * 109.47495 * 60.00313 * 6 3 2 36 36 H 1.08996 * 109.47189 * 299.99810 * 6 3 2 37 37 H 0.97001 * 119.99713 * 345.00063 * 7 6 3 38 38 H 1.08004 * 119.99572 * 0.02562 * 12 11 8 39 39 H 1.08004 * 120.00393 * 180.23620 * 13 12 11 40 40 H 1.08991 * 109.47127 * 30.02677 * 15 14 13 41 41 H 1.09005 * 109.46919 * 150.02736 * 15 14 13 42 42 H 0.96999 * 120.00028 * 179.97438 * 19 18 16 43 43 H 1.08005 * 119.99920 * 179.97438 * 24 14 13 44 44 H 1.07999 * 120.00005 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9431 1.3861 1.2492 7 7 3.6761 2.6545 1.2489 8 16 4.4118 3.1861 2.6340 9 8 3.4457 3.0736 3.6700 10 8 5.0569 4.4080 2.3022 11 6 5.6907 2.0370 3.0193 12 6 5.4221 0.9501 3.8302 13 6 6.4242 0.0460 4.1285 14 6 7.6976 0.2343 3.6245 15 6 8.7916 -0.7481 3.9549 16 6 9.4969 -0.3103 5.2128 17 1 9.1839 0.5890 5.7222 18 6 10.5416 -1.0580 5.7131 19 7 10.9231 -2.1529 5.0924 20 14 11.4163 -0.5150 7.2718 21 1 10.4435 -0.4628 8.3926 22 1 12.4942 -1.4831 7.5974 23 1 12.0059 0.8321 7.0649 24 6 7.9674 1.3240 2.8180 25 6 6.9640 2.2253 2.5153 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.6143 3.4119 0.0002 30 1 0.4423 2.4105 -0.8892 31 1 0.4430 2.4101 0.8908 32 1 3.6514 0.5577 -1.2493 33 1 2.3164 1.3284 -2.1392 34 1 3.4884 2.3299 -1.2490 35 1 3.6515 0.5576 1.2492 36 1 2.3165 1.3284 2.1392 37 1 3.7305 3.1831 0.4373 38 1 4.4282 0.8052 4.2273 39 1 6.2135 -0.8053 4.7590 40 1 8.3586 -1.7367 4.1065 41 1 9.5060 -0.7864 3.1325 42 1 11.6584 -2.6787 5.4443 43 1 8.9624 1.4714 2.4245 44 1 7.1751 3.0771 1.8857 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885218582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:23 Heat of formation + Delta-G solvation = -48.293367 kcal Electronic energy + Delta-G solvation = -24918.326689 eV Core-core repulsion = 21348.465058 eV Total energy + Delta-G solvation = -3569.861631 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.90308 -38.78289 -37.11261 -35.75699 -34.26271 -33.68039 -31.56382 -30.70251 -30.58013 -27.65556 -27.43223 -26.47820 -23.72981 -22.38008 -22.09972 -20.90700 -19.54404 -18.59247 -17.87389 -17.32613 -16.46173 -16.32190 -15.68626 -15.29337 -15.13204 -14.96862 -14.42081 -14.37884 -13.93478 -13.84155 -13.69390 -13.10986 -12.83661 -12.52833 -12.49511 -12.25327 -12.14970 -12.02471 -11.98764 -11.91721 -11.70506 -11.49106 -11.43305 -11.16575 -10.97580 -10.90561 -10.90322 -10.53578 -10.48271 -9.80649 -9.71254 -9.68276 -9.52773 -8.59453 -8.54136 -8.39184 -6.17740 -4.22880 0.51128 1.32598 1.79100 1.98895 3.09560 3.25724 3.29877 3.33444 3.76582 4.11187 4.31987 4.36616 4.39755 4.52838 4.57848 4.91640 5.03561 5.14945 5.18718 5.23635 5.24145 5.27976 5.39654 5.43820 5.55805 5.57776 5.70106 5.71816 5.75708 5.83223 5.90809 5.92864 5.99744 6.24571 6.32714 6.32821 6.48353 6.50456 6.81412 6.83705 6.90503 7.28416 7.42512 7.58285 7.77194 8.12555 8.81696 9.42114 10.92267 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019414 B = 0.002894 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.936801 B = 9673.147761 C =10346.642210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C -0.043 4.043 4 C -0.147 4.147 5 C -0.140 4.140 6 C 0.130 3.870 7 N -1.118 6.118 8 S 2.698 3.302 9 O -0.964 6.964 10 O -0.967 6.967 11 C -0.703 4.703 12 C -0.025 4.025 13 C -0.146 4.146 14 C 0.027 3.973 15 C 0.040 3.960 16 C -0.519 4.519 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C -0.146 4.146 25 C -0.022 4.022 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.415 0.585 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.265 0.735 43 H 0.128 0.872 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.745 5.702 -12.930 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.163 4.163 3 C -0.045 4.045 4 C -0.204 4.204 5 C -0.198 4.198 6 C 0.003 3.997 7 N -0.879 5.879 8 S 2.791 3.209 9 O -0.954 6.954 10 O -0.957 6.957 11 C -0.793 4.793 12 C -0.044 4.044 13 C -0.164 4.164 14 C 0.026 3.974 15 C 0.003 3.997 16 C -0.557 4.557 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.165 4.165 25 C -0.041 4.041 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.130 0.870 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.250 0.750 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.859 6.202 -12.281 23.344 hybrid contribution 1.127 -0.311 0.463 1.258 sum -17.731 5.891 -11.818 22.108 Atomic orbital electron populations 1.24033 0.96111 1.02221 1.00535 1.22822 0.95901 0.97352 1.00247 1.19828 0.95343 0.94091 0.95203 1.21982 0.98811 0.97464 1.02145 1.21843 0.99273 1.02364 0.96276 1.21307 0.94607 0.84937 0.98820 1.55613 1.68817 1.33387 1.30050 1.01529 0.73488 0.73297 0.72580 1.93556 1.59922 1.86762 1.55189 1.93565 1.76445 1.41952 1.83772 1.30312 1.14344 1.18156 1.16486 1.20784 0.99453 0.91367 0.92815 1.21243 0.93026 1.00448 1.01725 1.21116 0.95084 0.93951 0.87229 1.18531 0.90834 0.92680 0.97652 1.20934 1.16076 1.10006 1.08641 0.92337 1.24998 0.96793 0.94802 0.97507 1.69935 1.28187 1.15111 1.39769 0.86536 0.79226 0.78520 0.83095 1.20026 1.21096 1.20031 1.21246 0.99260 0.95289 1.00691 1.20766 0.91223 0.97020 0.95105 0.88484 0.87827 0.86957 0.92115 0.92164 0.91869 0.91897 0.92235 0.92189 0.91116 0.89952 0.74967 0.85281 0.85362 0.94727 0.94737 0.92563 0.85373 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.27 13.70 29.02 0.40 -0.88 16 2 C -0.14 -1.04 8.76 -36.03 -0.32 -1.35 16 3 C -0.04 -0.32 0.76 -155.66 -0.12 -0.43 16 4 C -0.15 -1.01 6.96 37.16 0.26 -0.76 16 5 C -0.14 -0.94 8.29 37.16 0.31 -0.63 16 6 C 0.13 1.15 5.09 -4.04 -0.02 1.13 16 7 N -1.12 -10.79 5.33 -10.61 -0.06 -10.84 16 8 S 2.70 36.66 5.74 -107.50 -0.62 36.04 16 9 O -0.96 -15.36 16.75 -57.17 -0.96 -16.32 16 10 O -0.97 -15.40 17.28 -57.17 -0.99 -16.39 16 11 C -0.70 -10.91 5.95 -39.58 -0.24 -11.15 16 12 C -0.02 -0.40 9.52 -39.58 -0.38 -0.77 16 13 C -0.15 -2.67 9.70 -39.59 -0.38 -3.06 16 14 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 15 C 0.04 0.97 5.10 -29.03 -0.15 0.82 16 16 C -0.52 -14.06 9.09 -34.44 -0.31 -14.37 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 20 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.15 -2.70 9.70 -39.59 -0.38 -3.08 16 25 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 26 H 0.10 0.56 8.06 -52.48 -0.42 0.14 16 27 H 0.10 0.63 5.69 -52.49 -0.30 0.34 16 28 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 29 H 0.06 0.41 7.20 -51.93 -0.37 0.04 16 30 H 0.06 0.36 7.50 -51.93 -0.39 -0.03 16 31 H 0.06 0.46 7.50 -51.93 -0.39 0.07 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.37 6.60 -51.93 -0.34 0.02 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.77 7.75 -51.93 -0.40 0.36 16 37 H 0.41 3.18 6.47 -34.47 -0.22 2.96 16 38 H 0.13 1.77 7.61 -52.48 -0.40 1.37 16 39 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 40 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 44 H 0.13 1.80 7.62 -52.49 -0.40 1.40 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -32.50 374.73 -10.15 -42.65 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.56 Total: 1.53 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: -2.34 Total: -33.65 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.68 Total: -35.61 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -1.95 Total: -32.71 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 36.66 SS G_CDS: -0.62 Total: 36.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.50 -10.15 -42.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885218582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.644 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds