Wall clock time and date at job start Tue Mar 31 2020 14:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47197 * 2 1 4 4 C 1.52998 * 109.46935 * 120.00628 * 2 1 3 5 5 H 1.09003 * 115.54672 * 274.32440 * 4 2 1 6 6 C 1.52999 * 117.51922 * 128.62797 * 4 2 1 7 7 C 1.52991 * 59.99846 * 252.51170 * 6 4 2 8 8 H 1.09008 * 117.51731 * 107.47760 * 7 6 4 9 9 N 1.46504 * 117.50270 * 252.50680 * 7 6 4 10 10 S 1.65597 * 120.00066 * 213.62768 * 9 7 6 11 11 O 1.42104 * 106.40038 * 311.45549 * 10 9 7 12 12 O 1.42100 * 106.40024 * 178.54144 * 10 9 7 13 13 C 1.76198 * 107.22200 * 64.99702 * 10 9 7 14 14 C 1.38235 * 119.99659 * 90.00066 * 13 10 9 15 15 C 1.38243 * 119.99768 * 180.02562 * 14 13 10 16 16 C 1.38238 * 119.99976 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99845 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.46993 * 90.00057 * 17 16 15 19 19 H 1.07991 * 120.00449 * 359.72131 * 18 17 16 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.72095 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.72528 * 20 18 17 23 23 H 1.48498 * 109.47416 * 59.99812 * 22 20 18 24 24 H 1.48508 * 109.46609 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46903 * 299.99397 * 22 20 18 26 26 C 1.38240 * 119.99731 * 0.25255 * 16 15 14 27 27 C 1.38231 * 120.00246 * 359.49876 * 26 16 15 28 28 H 1.09007 * 109.46958 * 299.99699 * 1 2 3 29 29 H 1.08997 * 109.47361 * 59.99709 * 1 2 3 30 30 H 1.09001 * 109.47519 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46562 * 240.00046 * 2 1 3 32 32 H 1.08998 * 109.46544 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47203 * 300.00388 * 3 2 1 34 34 H 1.08999 * 109.46616 * 60.00373 * 3 2 1 35 35 H 1.09000 * 117.49867 * 145.02454 * 6 4 2 36 36 H 1.09002 * 117.49783 * 0.02562 * 6 4 2 37 37 H 0.96998 * 119.99830 * 33.62374 * 9 7 6 38 38 H 1.07996 * 120.00408 * 359.97438 * 14 13 10 39 39 H 1.07996 * 120.00086 * 179.97438 * 15 14 13 40 40 H 1.08998 * 109.47083 * 329.99473 * 17 16 15 41 41 H 1.09001 * 109.46875 * 209.99736 * 17 16 15 42 42 H 0.97000 * 119.99651 * 180.02562 * 21 20 18 43 43 H 1.07995 * 119.99782 * 179.72830 * 26 16 15 44 44 H 1.07995 * 120.00091 * 180.22680 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 2.1267 -0.1062 2.1448 6 6 3.0742 -1.8315 1.0517 7 6 1.6357 -2.1853 1.4342 8 1 1.0063 -2.6345 0.6659 9 7 1.3947 -2.6530 2.8015 10 16 0.2168 -3.7791 3.0959 11 8 -0.9496 -3.3249 2.4232 12 8 0.2554 -4.0446 4.4914 13 6 0.7066 -5.2686 2.2922 14 6 1.4758 -6.1976 2.9675 15 6 1.8605 -7.3660 2.3368 16 6 1.4755 -7.6056 1.0309 17 6 1.8954 -8.8791 0.3432 18 6 0.8554 -9.9439 0.5793 19 1 -0.0195 -9.7222 1.1721 20 6 1.0237 -11.2028 0.0427 21 7 2.0890 -11.4727 -0.6798 22 14 -0.2616 -12.5249 0.3417 23 1 -1.5692 -12.0758 -0.2001 24 1 0.1516 -13.7795 -0.3371 25 1 -0.3884 -12.7709 1.8008 26 6 0.7101 -6.6744 0.3541 27 6 0.3211 -5.5084 0.9865 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 3.8413 -1.9466 1.8175 36 1 3.3918 -2.0478 0.0317 37 1 1.9252 -2.3030 3.5343 38 1 1.7770 -6.0103 3.9876 39 1 2.4619 -8.0917 2.8642 40 1 2.8527 -9.2106 0.7453 41 1 1.9938 -8.6984 -0.7273 42 1 2.2071 -12.3583 -1.0576 43 1 0.4130 -6.8596 -0.6676 44 1 -0.2798 -4.7826 0.4589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885235570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:42 Heat of formation + Delta-G solvation = -50.850270 kcal Electronic energy + Delta-G solvation = -24766.154756 eV Core-core repulsion = 21196.182249 eV Total energy + Delta-G solvation = -3569.972507 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.97714 -38.79635 -37.13711 -35.79004 -34.70113 -33.68885 -31.65521 -31.56275 -30.59397 -27.44453 -27.38571 -23.74124 -23.27274 -22.52297 -22.16452 -20.93738 -20.28795 -19.40883 -17.90277 -17.29843 -16.68295 -16.44653 -15.41773 -15.18640 -15.09032 -14.61267 -14.38898 -14.34200 -13.84454 -13.38657 -13.19891 -13.12258 -13.03940 -12.82723 -12.46700 -12.24963 -12.18814 -12.07587 -11.96055 -11.89244 -11.71133 -11.51319 -11.49627 -11.27806 -10.96499 -10.93701 -10.91248 -10.51834 -10.49100 -10.23151 -9.77155 -9.66708 -9.16210 -8.60394 -8.54416 -8.39754 -6.18002 -4.23108 0.45778 1.31372 1.78118 2.97237 3.25506 3.29667 3.33156 3.50460 3.76953 4.09947 4.26869 4.36813 4.45086 4.55525 4.62477 4.74545 4.86051 5.02387 5.12476 5.16409 5.21206 5.23707 5.32874 5.43269 5.57677 5.63665 5.66187 5.70881 5.78556 5.79657 5.89759 5.90713 5.97340 6.10285 6.16037 6.23540 6.31285 6.48844 6.75260 6.82440 6.89601 7.27948 7.41764 7.57785 7.76930 8.12238 8.81438 9.41838 10.92004 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018820 B = 0.002862 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.456570 B = 9782.342475 C =10384.407807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.067 4.067 3 C -0.143 4.143 4 C -0.151 4.151 5 H 0.108 0.892 6 C -0.183 4.183 7 C 0.092 3.908 8 H 0.136 0.864 9 N -1.090 6.090 10 S 2.699 3.301 11 O -0.961 6.961 12 O -0.965 6.965 13 C -0.702 4.702 14 C -0.021 4.021 15 C -0.145 4.145 16 C 0.027 3.973 17 C 0.040 3.960 18 C -0.518 4.518 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.899 3.101 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.145 4.145 27 C -0.025 4.025 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.416 0.584 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.265 0.735 43 H 0.129 0.871 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 22.912 2.559 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 C -0.201 4.201 4 C -0.172 4.172 5 H 0.126 0.874 6 C -0.222 4.222 7 C -0.016 4.016 8 H 0.154 0.846 9 N -0.844 5.844 10 S 2.792 3.208 11 O -0.951 6.951 12 O -0.956 6.956 13 C -0.792 4.792 14 C -0.041 4.041 15 C -0.164 4.164 16 C 0.027 3.973 17 C 0.003 3.997 18 C -0.556 4.556 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.164 4.164 27 C -0.044 4.044 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.250 0.750 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.147 0.853 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.364 22.826 2.825 23.040 hybrid contribution 0.117 -1.229 0.067 1.236 sum 1.481 21.597 2.892 21.840 Atomic orbital electron populations 1.21864 0.94567 1.02638 1.01717 1.20736 0.96020 0.95971 0.95892 1.21799 1.00979 0.95552 1.01749 1.22920 1.03078 0.91003 1.00209 0.87423 1.23587 0.92776 1.02421 1.03449 1.21385 0.98897 0.97436 0.83916 0.84650 1.55193 1.57196 1.58466 1.13591 1.01564 0.72959 0.73091 0.73210 1.93568 1.44853 1.80475 1.76158 1.93572 1.86374 1.85221 1.30398 1.30284 1.18849 1.22122 1.07958 1.20764 0.92283 0.92804 0.98239 1.21250 1.02530 0.97182 0.95472 1.21119 0.88134 0.94892 0.93168 1.18532 0.97533 0.87706 0.95933 1.20931 1.06236 0.95088 1.33388 0.92340 1.25003 0.95768 0.98527 0.94815 1.69937 1.27219 1.22026 1.33806 0.86536 0.81605 0.80612 0.78621 1.20021 1.21096 1.20036 1.21238 1.00146 0.93993 1.00984 1.20763 0.94482 0.97238 0.91961 0.92525 0.92683 0.91949 0.90834 0.92631 0.92623 0.92700 0.88259 0.87789 0.74989 0.85294 0.85345 0.94741 0.94690 0.92561 0.85333 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.03 37.16 0.34 -0.88 16 2 C -0.07 -0.49 3.07 -90.62 -0.28 -0.77 16 3 C -0.14 -0.89 9.18 37.16 0.34 -0.55 16 4 C -0.15 -1.16 5.07 -90.63 -0.46 -1.62 16 5 H 0.11 0.77 8.11 -51.93 -0.42 0.35 16 6 C -0.18 -1.41 10.10 -26.74 -0.27 -1.68 16 7 C 0.09 0.85 5.67 -67.94 -0.39 0.47 16 8 H 0.14 1.27 7.57 -51.92 -0.39 0.88 16 9 N -1.09 -10.83 6.04 -4.89 -0.03 -10.86 16 10 S 2.70 36.93 5.72 -107.50 -0.61 36.31 16 11 O -0.96 -15.22 17.04 -57.17 -0.97 -16.20 16 12 O -0.97 -15.47 17.28 -57.17 -0.99 -16.46 16 13 C -0.70 -10.92 5.95 -39.58 -0.24 -11.16 16 14 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 15 C -0.15 -2.69 9.70 -39.58 -0.38 -3.08 16 16 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 17 C 0.04 0.97 5.10 -29.04 -0.15 0.82 16 18 C -0.52 -14.02 9.09 -34.44 -0.31 -14.33 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 22 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 26 C -0.14 -2.64 9.70 -39.58 -0.38 -3.03 16 27 C -0.02 -0.40 9.52 -39.58 -0.38 -0.77 16 28 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.56 7.29 -51.93 -0.38 0.19 16 31 H 0.07 0.51 7.90 -51.93 -0.41 0.10 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.74 8.05 -51.93 -0.42 0.33 16 37 H 0.42 3.21 8.96 -34.47 -0.31 2.90 16 38 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 39 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 41 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 44 H 0.13 1.72 7.62 -52.49 -0.40 1.32 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -32.34 381.78 -11.59 -43.93 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.89 Total: 1.87 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: -3.56 Total: -35.69 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.71 Total: -35.59 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.96 Total: -32.66 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 36.93 SS G_CDS: -0.61 Total: 36.31 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.34 -11.59 -43.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885235570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.921 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds