Wall clock time and date at job start Tue Mar 31 2020 14:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47085 * 2 1 4 4 C 1.53006 * 109.47097 * 240.00085 * 2 1 3 5 5 O 1.42902 * 109.46945 * 120.00024 * 2 1 3 6 6 C 1.42896 * 113.99957 * 60.00537 * 5 2 1 7 7 C 1.50702 * 109.47018 * 179.97438 * 6 5 2 8 8 C 1.38303 * 119.96525 * 269.97366 * 7 6 5 9 9 C 1.38262 * 120.14327 * 180.02562 * 8 7 6 10 10 C 1.38136 * 120.07025 * 359.67748 * 9 8 7 11 11 C 1.38856 * 119.92641 * 0.59942 * 10 9 8 12 12 N 1.39917 * 120.07116 * 179.69994 * 11 10 9 13 13 C 1.34779 * 120.00199 * 326.54865 * 12 11 10 14 14 O 1.21292 * 119.99752 * 354.72752 * 13 12 11 15 15 C 1.50697 * 120.00499 * 174.73002 * 13 12 11 16 16 S 1.80998 * 109.47123 * 180.02562 * 15 13 12 17 17 C 1.76208 * 99.99886 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99858 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99982 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99776 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47366 * 89.99956 * 21 19 17 23 23 H 1.48500 * 109.46680 * 209.99954 * 21 19 17 24 24 H 1.48496 * 109.47171 * 329.99655 * 21 19 17 25 25 C 1.38090 * 119.96719 * 89.99700 * 7 6 5 26 26 H 1.08998 * 109.47366 * 299.99772 * 1 2 3 27 27 H 1.08996 * 109.47169 * 60.00183 * 1 2 3 28 28 H 1.09006 * 109.46984 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47266 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47250 * 300.00352 * 3 2 1 31 31 H 1.08998 * 109.46832 * 59.99901 * 3 2 1 32 32 H 1.08992 * 109.47155 * 299.99889 * 4 2 1 33 33 H 1.09000 * 109.46853 * 59.99884 * 4 2 1 34 34 H 1.09000 * 109.46608 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47619 * 59.99806 * 6 5 2 36 36 H 1.09005 * 109.46904 * 299.99389 * 6 5 2 37 37 H 1.08003 * 119.92801 * 0.02647 * 8 7 6 38 38 H 1.07992 * 119.96523 * 179.97438 * 9 8 7 39 39 H 1.07988 * 120.04058 * 180.31809 * 10 9 8 40 40 H 0.97006 * 120.00500 * 146.55272 * 12 11 10 41 41 H 1.09001 * 109.47394 * 59.99674 * 15 13 12 42 42 H 1.09005 * 109.47037 * 299.99959 * 15 13 12 43 43 H 0.96996 * 119.99947 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.03489 * 359.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1668 6 6 1.5847 -2.0355 1.2644 7 6 2.1420 -2.6447 2.5251 8 6 3.3754 -3.2702 2.5034 9 6 3.8900 -3.8309 3.6577 10 6 3.1762 -3.7620 4.8384 11 6 1.9351 -3.1398 4.8623 12 7 1.2067 -3.0738 6.0551 13 6 1.2848 -4.0795 6.9489 14 8 1.9093 -5.0837 6.6789 15 6 0.5963 -3.9566 8.2837 16 16 0.8856 -5.4579 9.2524 17 6 -0.0052 -5.0530 10.7178 18 1 -0.5130 -4.1030 10.7959 19 6 -0.0533 -5.9544 11.7722 20 7 -0.7183 -5.6516 12.8670 21 14 0.8269 -7.5965 11.6379 22 1 2.2152 -7.4571 12.1463 23 1 0.1042 -8.6128 12.4442 24 1 0.8609 -8.0251 10.2165 25 6 1.4206 -2.5783 3.7007 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 1.9492 -2.5916 0.4007 36 1 0.4958 -2.0778 1.2907 37 1 3.9377 -3.3208 1.5827 38 1 4.8531 -4.3189 3.6374 39 1 3.5809 -4.1955 5.7408 40 1 0.6455 -2.3042 6.2388 41 1 -0.4746 -3.8241 8.1294 42 1 0.9952 -3.0958 8.8205 43 1 -0.7523 -6.2817 13.6037 44 1 0.4576 -2.0897 3.7171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885624561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:48 Heat of formation + Delta-G solvation = -64.681442 kcal Electronic energy + Delta-G solvation = -23813.826923 eV Core-core repulsion = 20243.254652 eV Total energy + Delta-G solvation = -3570.572271 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.47349 -39.48723 -38.26375 -34.86976 -33.88202 -32.47499 -31.54979 -30.66602 -28.54765 -27.99573 -27.82823 -26.03957 -25.65340 -22.62059 -22.26148 -20.40932 -19.99913 -18.14682 -17.37270 -16.90262 -16.62388 -16.26183 -15.85541 -15.40202 -15.21182 -15.00233 -14.69096 -14.15924 -13.95982 -13.85849 -13.72604 -13.50293 -13.21675 -12.85349 -12.81936 -12.60763 -12.40705 -12.26812 -12.15315 -12.12369 -11.76538 -11.60448 -11.30734 -11.27764 -11.03958 -10.93390 -10.68643 -10.28511 -9.89484 -9.84853 -9.62457 -9.03883 -8.91689 -8.56762 -8.12214 -6.97430 -6.32299 -4.05101 1.19584 1.26569 2.64981 2.77308 3.21355 3.30771 3.34429 3.47527 3.56859 3.89270 4.29622 4.35666 4.41367 4.58689 4.61632 4.70482 4.71753 4.91853 4.98515 5.06675 5.08337 5.10019 5.15616 5.19075 5.29155 5.34192 5.36321 5.41896 5.46911 5.50497 5.62265 5.63198 5.66133 5.83867 5.84863 5.88539 5.92479 6.27302 6.30937 6.49137 6.50342 6.93666 7.00329 7.40989 7.90612 8.27324 8.38232 9.13479 10.76822 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.031010 B = 0.002072 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.716432 B =13509.696936 C =14090.409272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.369 6.369 6 C 0.101 3.899 7 C -0.074 4.074 8 C -0.120 4.120 9 C -0.102 4.102 10 C -0.115 4.115 11 C 0.156 3.844 12 N -0.679 5.679 13 C 0.531 3.469 14 O -0.498 6.498 15 C -0.125 4.125 16 S -0.138 6.138 17 C -0.523 4.523 18 H 0.089 0.911 19 C 0.096 3.904 20 N -0.879 5.879 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.129 4.129 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.411 0.589 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.271 0.729 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 12.449 -28.140 31.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.066 3.934 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.289 6.289 6 C 0.025 3.975 7 C -0.075 4.075 8 C -0.139 4.139 9 C -0.120 4.120 10 C -0.135 4.135 11 C 0.061 3.939 12 N -0.326 5.326 13 C 0.318 3.682 14 O -0.371 6.371 15 C -0.275 4.275 16 S 0.088 5.912 17 C -0.670 4.670 18 H 0.107 0.893 19 C -0.113 4.113 20 N -0.515 5.515 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.150 4.150 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.156 0.844 40 H 0.247 0.753 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.714 10.801 -28.174 30.710 hybrid contribution -1.008 0.710 0.504 1.332 sum 4.706 11.511 -27.670 30.336 Atomic orbital electron populations 1.22447 0.95740 1.02623 1.02925 1.21509 0.93153 0.93265 0.85496 1.21753 1.02007 0.93247 1.02460 1.22443 1.02293 1.01048 0.97898 1.88072 1.74416 1.23483 1.42895 1.21310 0.98237 0.83027 0.94892 1.19258 0.95310 0.99122 0.93785 1.20949 0.95196 0.99219 0.98548 1.21016 0.99858 0.99020 0.92134 1.21285 0.92692 0.99883 0.99667 1.17721 0.91245 0.99179 0.85715 1.43640 1.47882 1.23265 1.17801 1.20500 0.80406 0.82062 0.85250 1.90718 1.40329 1.28705 1.77299 1.23291 1.03671 1.05856 0.94727 1.84808 1.71018 1.19468 1.15916 1.22299 1.37438 1.07836 0.99453 0.89288 1.24714 0.94221 0.98346 0.94018 1.69935 1.40032 1.36571 1.04966 0.86736 0.80417 0.83528 0.81177 1.19163 1.19879 1.15939 1.20718 1.00352 1.03231 0.90712 0.91578 0.91524 0.92111 0.91776 0.91201 0.91739 0.92126 0.91529 0.91633 0.92211 0.92286 0.86155 0.85574 0.84443 0.75332 0.88093 0.87999 0.91885 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 8.25 37.16 0.31 -0.79 16 2 C 0.10 0.75 1.14 -90.62 -0.10 0.64 16 3 C -0.14 -0.86 8.84 37.16 0.33 -0.53 16 4 C -0.18 -1.05 8.25 37.16 0.31 -0.74 16 5 O -0.37 -3.60 9.97 -35.23 -0.35 -3.96 16 6 C 0.10 0.90 5.26 36.01 0.19 1.09 16 7 C -0.07 -0.81 5.51 -104.65 -0.58 -1.39 16 8 C -0.12 -1.30 9.70 -39.55 -0.38 -1.69 16 9 C -0.10 -1.21 10.04 -39.61 -0.40 -1.61 16 10 C -0.12 -1.65 8.66 -39.39 -0.34 -1.99 16 11 C 0.16 2.13 6.28 -83.70 -0.53 1.61 16 12 N -0.68 -9.12 5.34 -9.86 -0.05 -9.18 16 13 C 0.53 9.26 7.59 -10.99 -0.08 9.17 16 14 O -0.50 -10.39 13.56 5.55 0.08 -10.31 16 15 C -0.12 -2.34 6.16 36.00 0.22 -2.11 16 16 S -0.14 -3.43 18.55 -107.50 -1.99 -5.43 16 17 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 18 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 19 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 20 N -0.88 -26.28 13.97 55.49 0.78 -25.51 16 21 Si 0.86 21.57 27.74 -169.99 -4.72 16.86 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 25 C -0.13 -1.51 9.62 -39.39 -0.38 -1.89 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.36 6.54 -51.93 -0.34 0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.34 6.54 -51.93 -0.34 0.00 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.46 6.36 -51.93 -0.33 0.13 16 36 H 0.06 0.47 6.36 -51.93 -0.33 0.14 16 37 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.14 2.21 6.43 -52.49 -0.34 1.87 16 40 H 0.41 4.12 8.82 -40.82 -0.36 3.76 16 41 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -33.58 375.73 -8.51 -42.09 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.69 Total: 1.86 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -1.22 Total: -12.08 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.72 Total: -34.69 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.28 Total: -14.27 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.72 Total: 16.86 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.58 -8.51 -42.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885624561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.596 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds