Wall clock time and date at job start Tue Mar 31 2020 14:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47085 * 2 1 4 4 C 1.53006 * 109.47097 * 240.00085 * 2 1 3 5 5 O 1.42902 * 109.46945 * 120.00024 * 2 1 3 6 6 C 1.42896 * 113.99957 * 60.00537 * 5 2 1 7 7 C 1.50702 * 109.47018 * 179.97438 * 6 5 2 8 8 C 1.38303 * 119.96525 * 269.97366 * 7 6 5 9 9 C 1.38262 * 120.14327 * 180.02562 * 8 7 6 10 10 C 1.38136 * 120.07025 * 359.67748 * 9 8 7 11 11 C 1.38856 * 119.92641 * 0.59942 * 10 9 8 12 12 N 1.39917 * 120.07116 * 179.69994 * 11 10 9 13 13 C 1.34779 * 120.00199 * 326.54865 * 12 11 10 14 14 O 1.21292 * 119.99752 * 354.72752 * 13 12 11 15 15 C 1.50697 * 120.00499 * 174.73002 * 13 12 11 16 16 S 1.80998 * 109.47123 * 180.02562 * 15 13 12 17 17 C 1.76208 * 99.99886 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99858 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99982 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99776 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47366 * 89.99956 * 21 19 17 23 23 H 1.48500 * 109.46680 * 209.99954 * 21 19 17 24 24 H 1.48496 * 109.47171 * 329.99655 * 21 19 17 25 25 C 1.38090 * 119.96719 * 89.99700 * 7 6 5 26 26 H 1.08998 * 109.47366 * 299.99772 * 1 2 3 27 27 H 1.08996 * 109.47169 * 60.00183 * 1 2 3 28 28 H 1.09006 * 109.46984 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47266 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47250 * 300.00352 * 3 2 1 31 31 H 1.08998 * 109.46832 * 59.99901 * 3 2 1 32 32 H 1.08992 * 109.47155 * 299.99889 * 4 2 1 33 33 H 1.09000 * 109.46853 * 59.99884 * 4 2 1 34 34 H 1.09000 * 109.46608 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47619 * 59.99806 * 6 5 2 36 36 H 1.09005 * 109.46904 * 299.99389 * 6 5 2 37 37 H 1.08003 * 119.92801 * 0.02647 * 8 7 6 38 38 H 1.07992 * 119.96523 * 179.97438 * 9 8 7 39 39 H 1.07988 * 120.04058 * 180.31809 * 10 9 8 40 40 H 0.97006 * 120.00500 * 146.55272 * 12 11 10 41 41 H 1.09001 * 109.47394 * 59.99674 * 15 13 12 42 42 H 1.09005 * 109.47037 * 299.99959 * 15 13 12 43 43 H 0.96996 * 119.99947 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.03489 * 359.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1668 6 6 1.5847 -2.0355 1.2644 7 6 2.1420 -2.6447 2.5251 8 6 3.3754 -3.2702 2.5034 9 6 3.8900 -3.8309 3.6577 10 6 3.1762 -3.7620 4.8384 11 6 1.9351 -3.1398 4.8623 12 7 1.2067 -3.0738 6.0551 13 6 1.2848 -4.0795 6.9489 14 8 1.9093 -5.0837 6.6789 15 6 0.5963 -3.9566 8.2837 16 16 0.8856 -5.4579 9.2524 17 6 -0.0052 -5.0530 10.7178 18 1 -0.5130 -4.1030 10.7959 19 6 -0.0533 -5.9544 11.7722 20 7 -0.7183 -5.6516 12.8670 21 14 0.8269 -7.5965 11.6379 22 1 2.2152 -7.4571 12.1463 23 1 0.1042 -8.6128 12.4442 24 1 0.8609 -8.0251 10.2165 25 6 1.4206 -2.5783 3.7007 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 1.9492 -2.5916 0.4007 36 1 0.4958 -2.0778 1.2907 37 1 3.9377 -3.3208 1.5827 38 1 4.8531 -4.3189 3.6374 39 1 3.5809 -4.1955 5.7408 40 1 0.6455 -2.3042 6.2388 41 1 -0.4746 -3.8241 8.1294 42 1 0.9952 -3.0958 8.8205 43 1 -0.7523 -6.2817 13.6037 44 1 0.4576 -2.0897 3.7171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885624561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:47 Heat of formation + Delta-G solvation = -85.366310 kcal Electronic energy + Delta-G solvation = -23814.723886 eV Core-core repulsion = 20243.254652 eV Total energy + Delta-G solvation = -3571.469235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.61122 -40.25323 -39.23617 -36.01091 -34.68435 -34.55853 -32.39698 -31.92261 -29.74423 -28.53581 -28.26076 -27.86299 -26.78061 -23.66615 -23.26780 -21.28287 -20.84508 -19.98061 -18.59909 -18.01435 -17.44297 -17.25443 -17.09696 -16.86203 -16.29471 -16.20391 -15.75336 -15.49182 -15.14367 -14.87530 -14.69662 -14.51000 -14.37895 -14.01834 -13.95862 -13.38940 -13.36700 -13.13775 -13.02697 -12.86213 -12.80441 -12.72784 -12.61774 -12.53882 -12.22997 -12.03410 -11.88557 -11.58541 -11.33507 -11.18262 -10.97143 -10.57153 -10.43879 -9.84701 -9.17726 -9.00494 -8.52645 -6.24050 0.21684 0.33037 0.93796 1.30718 1.43789 1.46444 1.52442 2.07403 2.23810 2.57782 2.67222 2.85584 3.08570 3.65484 3.78235 3.88261 3.97797 4.01620 4.14624 4.16029 4.17237 4.30842 4.36153 4.41234 4.43963 4.55635 4.67163 4.71232 4.73787 4.85648 4.90034 4.97949 4.98125 5.00306 5.20440 5.29818 5.32675 5.38471 5.39288 5.51810 5.59245 5.69663 6.01290 6.10758 6.29454 6.36804 6.92251 7.00613 8.59601 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.031010 B = 0.002072 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.716432 B =13509.696936 C =14090.409272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 C -0.138 4.138 4 C -0.177 4.177 5 O -0.390 6.390 6 C 0.103 3.897 7 C -0.077 4.077 8 C -0.116 4.116 9 C -0.106 4.106 10 C -0.139 4.139 11 C 0.134 3.866 12 N -0.658 5.658 13 C 0.536 3.464 14 O -0.537 6.537 15 C -0.111 4.111 16 S -0.171 6.171 17 C -0.529 4.529 18 H 0.064 0.936 19 C 0.045 3.955 20 N -0.915 5.915 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.237 1.237 25 C -0.126 4.126 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.112 0.888 40 H 0.428 0.572 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.277 0.723 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.744 13.062 -30.960 33.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.059 3.941 3 C -0.195 4.195 4 C -0.235 4.235 5 O -0.311 6.311 6 C 0.028 3.972 7 C -0.078 4.078 8 C -0.134 4.134 9 C -0.124 4.124 10 C -0.159 4.159 11 C 0.040 3.960 12 N -0.306 5.306 13 C 0.324 3.676 14 O -0.413 6.413 15 C -0.262 4.262 16 S 0.056 5.944 17 C -0.677 4.677 18 H 0.082 0.918 19 C -0.160 4.160 20 N -0.553 5.553 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.161 1.161 25 C -0.146 4.146 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.130 0.870 40 H 0.267 0.733 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.792 11.464 -31.016 33.570 hybrid contribution -1.029 0.705 1.211 1.739 sum 4.763 12.168 -29.805 32.544 Atomic orbital electron populations 1.22435 0.94997 1.02848 1.03290 1.21722 0.93811 0.93435 0.85167 1.21787 1.01652 0.93050 1.03007 1.22425 1.01989 1.01233 0.97809 1.88036 1.74951 1.23782 1.44324 1.21325 0.98749 0.82994 0.94180 1.19615 0.95215 0.98548 0.94440 1.21277 0.95249 0.97930 0.98993 1.21238 1.00450 0.99019 0.91730 1.21261 0.93787 1.01134 0.99765 1.17872 0.91423 1.00606 0.86139 1.43303 1.47443 1.22684 1.17120 1.20169 0.79895 0.82372 0.85204 1.90711 1.42159 1.30462 1.77976 1.23253 1.05287 1.02875 0.94736 1.84724 1.70601 1.23814 1.15286 1.22451 1.37230 1.06879 1.01140 0.91763 1.25562 0.94970 1.01683 0.93802 1.70013 1.41422 1.38067 1.05829 0.85872 0.79528 0.79834 0.81174 1.18707 1.18341 1.16064 1.20931 1.01131 1.02457 0.90118 0.92340 0.90079 0.91933 0.92366 0.89322 0.92554 0.91864 0.90100 0.92111 0.90758 0.91305 0.83659 0.83924 0.86963 0.73321 0.86176 0.86312 0.91348 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 8.25 71.98 0.59 -1.15 16 2 C 0.10 1.16 1.14 -10.79 -0.01 1.15 16 3 C -0.14 -1.47 8.84 71.98 0.64 -0.83 16 4 C -0.18 -1.60 8.25 71.98 0.59 -1.01 16 5 O -0.39 -6.77 9.97 -148.98 -1.49 -8.26 16 6 C 0.10 1.56 5.26 71.24 0.37 1.93 16 7 C -0.08 -1.52 5.51 -19.88 -0.11 -1.63 16 8 C -0.12 -2.26 9.70 22.29 0.22 -2.04 16 9 C -0.11 -2.42 10.04 22.25 0.22 -2.19 16 10 C -0.14 -3.98 8.66 22.39 0.19 -3.79 16 11 C 0.13 3.52 6.28 38.16 0.24 3.76 16 12 N -0.66 -16.94 5.34 -303.50 -1.62 -18.56 16 13 C 0.54 18.45 7.59 87.66 0.66 19.12 16 14 O -0.54 -22.63 13.56 -3.07 -0.04 -22.67 16 15 C -0.11 -4.06 6.16 71.24 0.44 -3.62 16 16 S -0.17 -8.50 18.55 -56.49 -1.05 -9.54 16 17 C -0.53 -30.50 10.04 67.95 0.68 -29.81 16 18 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 19 C 0.05 2.65 5.50 84.86 0.47 3.12 16 20 N -0.92 -55.45 13.97 21.65 0.30 -55.15 16 21 Si 0.91 44.76 27.74 68.60 1.90 46.66 16 22 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 25 C -0.13 -2.70 9.62 22.39 0.22 -2.48 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.58 6.54 -2.38 -0.02 0.57 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.54 6.54 -2.39 -0.02 0.52 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.90 6.36 -2.39 -0.02 0.89 16 36 H 0.07 0.90 6.36 -2.38 -0.02 0.89 16 37 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 38 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.11 3.76 6.43 -2.92 -0.02 3.74 16 40 H 0.43 7.79 8.82 -92.70 -0.82 6.97 16 41 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 42 H 0.12 3.97 8.14 -2.39 -0.02 3.96 16 43 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -73.26 375.73 3.57 -69.69 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.15 Total: 17.32 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 5.42 Total: -19.48 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -1.32 Total: -73.71 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -1.53 Total: -30.93 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.90 Total: 46.66 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.05 Total: -9.54 kcal Total: -73.26 3.57 -69.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885624561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.678 kcal (2) G-P(sol) polarization free energy of solvation -73.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds