Wall clock time and date at job start Tue Mar 31 2020 13:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29025 * 124.91881 * 2 1 4 4 C 1.31783 * 117.12171 * 180.02562 * 3 2 1 5 5 C 1.50707 * 122.74328 * 180.02562 * 4 3 2 6 6 C 1.33630 * 114.50354 * 359.97438 * 4 3 2 7 7 C 1.50697 * 126.03963 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47266 * 89.99962 * 7 6 4 9 9 O 1.20822 * 119.99958 * 0.02562 * 8 7 6 10 10 O 1.34234 * 120.00068 * 180.02562 * 8 7 6 11 11 C 1.45196 * 116.99938 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47070 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.41489 * 55.14106 * 12 11 10 14 14 C 1.52956 * 109.41571 * 174.99982 * 12 11 10 15 15 C 1.53228 * 109.40820 * 183.70669 * 14 12 11 16 16 C 1.51270 * 108.53358 * 305.37211 * 15 14 12 17 17 C 1.37881 * 120.84880 * 231.36364 * 16 15 14 18 18 N 1.31510 * 120.00046 * 0.02562 * 17 16 15 19 19 Si 1.86802 * 119.99644 * 180.02562 * 17 16 15 20 20 H 1.48499 * 109.47187 * 60.00635 * 19 17 16 21 21 H 1.48500 * 109.47005 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47321 * 300.00214 * 19 17 16 23 23 C 1.51269 * 118.30262 * 51.35103 * 16 15 14 24 24 C 1.52955 * 109.41514 * 295.35581 * 12 11 10 25 25 S 1.70976 * 124.91401 * 180.31613 * 2 1 3 26 26 H 1.08995 * 109.47112 * 90.01955 * 1 2 3 27 27 H 1.08996 * 109.47129 * 210.02423 * 1 2 3 28 28 H 1.09001 * 109.46188 * 330.02533 * 1 2 3 29 29 H 1.09006 * 109.46446 * 269.98874 * 5 4 3 30 30 H 1.08994 * 109.47504 * 29.99423 * 5 4 3 31 31 H 1.09003 * 109.46619 * 150.00077 * 5 4 3 32 32 H 1.09004 * 109.47205 * 330.00055 * 7 6 4 33 33 H 1.08997 * 109.47395 * 210.00548 * 7 6 4 34 34 H 1.08996 * 109.47465 * 299.99911 * 11 10 8 35 35 H 1.08999 * 109.47008 * 59.99921 * 11 10 8 36 36 H 1.09004 * 109.48506 * 303.69093 * 14 12 11 37 37 H 1.09009 * 109.48262 * 63.72841 * 14 12 11 38 38 H 1.08999 * 109.62545 * 65.08771 * 15 14 12 39 39 H 1.09000 * 109.62826 * 185.46998 * 15 14 12 40 40 H 0.97006 * 119.99626 * 179.97438 * 18 17 16 41 41 H 1.09004 * 109.62527 * 68.35798 * 23 16 15 42 42 H 1.08997 * 109.62820 * 188.74455 * 23 16 15 43 43 H 1.09002 * 109.48634 * 296.27637 * 24 12 11 44 44 H 1.08995 * 109.48473 * 56.31763 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5513 0.8792 -0.0005 5 6 4.5309 2.0245 0.0000 6 6 3.9354 -0.4007 -0.0004 7 6 5.3574 -0.8996 -0.0004 8 6 5.8315 -1.0658 1.4204 9 8 5.0905 -0.8063 2.3387 10 8 7.0770 -1.5023 1.6657 11 6 7.4656 -1.6379 3.0581 12 6 8.9073 -2.1439 3.1382 13 1 9.5570 -1.4781 2.5700 14 6 9.3573 -2.1678 4.5998 15 6 10.8297 -2.5858 4.6725 16 6 10.9915 -3.9042 3.9488 17 6 11.6221 -4.9704 4.5544 18 7 12.0916 -4.8487 5.7769 19 14 11.8095 -6.5876 3.6385 20 1 12.5934 -6.3654 2.3969 21 1 12.5169 -7.5667 4.5024 22 1 10.4668 -7.1167 3.2882 23 6 10.4436 -4.0232 2.5439 24 6 8.9851 -3.5530 2.5485 25 16 2.4856 -1.4020 -0.0077 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3632 0.8903 0.5135 29 1 4.7668 2.3011 -1.0277 30 1 4.0909 2.8787 0.5144 31 1 5.4435 1.7217 0.5133 32 1 5.9949 -0.1801 -0.5143 33 1 5.4057 -1.8597 -0.5143 34 1 7.3923 -0.6690 3.5519 35 1 6.8035 -2.3488 3.5525 36 1 9.2396 -1.1744 5.0328 37 1 8.7490 -2.8813 5.1559 38 1 11.4496 -1.8272 4.1946 39 1 11.1273 -2.6982 5.7150 40 1 12.5349 -5.5990 6.2030 41 1 11.0278 -3.3977 1.8689 42 1 10.4953 -5.0619 2.2175 43 1 8.3856 -4.2337 3.1529 44 1 8.6038 -3.5415 1.5275 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893026372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:20 Heat of formation + Delta-G solvation = -92.495195 kcal Electronic energy + Delta-G solvation = -24537.460479 eV Core-core repulsion = 20965.682113 eV Total energy + Delta-G solvation = -3571.778366 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69776 -40.82112 -39.00390 -37.36429 -34.96468 -34.51041 -32.10113 -31.58367 -30.89980 -30.09444 -27.45809 -26.23000 -23.77664 -23.51187 -22.96620 -22.12769 -20.88342 -19.82218 -19.03229 -18.77288 -18.03865 -17.45139 -17.37408 -16.40940 -16.10134 -15.89763 -15.33733 -15.20188 -14.67697 -14.63965 -14.49406 -14.29519 -14.20238 -14.04903 -13.83990 -13.61087 -13.39674 -13.22068 -12.93736 -12.89847 -12.81587 -12.63475 -12.52375 -12.42821 -12.12889 -11.90672 -11.71769 -11.60605 -11.48680 -11.32111 -10.72502 -10.67341 -10.52806 -10.45496 -10.29029 -9.58603 -8.15957 -6.09007 -0.40151 0.32360 0.70173 1.13994 1.39925 1.40310 1.48623 1.53307 1.90201 2.41370 3.10543 3.10942 3.48608 3.79330 3.88060 3.95312 3.98187 4.02132 4.19151 4.41653 4.44153 4.46819 4.52545 4.56693 4.63867 4.70884 4.72750 4.76027 4.78664 4.92461 5.00406 5.06496 5.07746 5.15925 5.27623 5.29906 5.31811 5.45164 5.49335 5.62865 5.67010 5.79634 5.89966 6.38118 6.68903 6.72321 6.97654 7.48585 8.95209 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.027153 B = 0.002358 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.936841 B =11873.427952 C =12294.414559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.045 3.955 3 N -0.503 5.503 4 C 0.070 3.930 5 C -0.081 4.081 6 C -0.239 4.239 7 C -0.028 4.028 8 C 0.459 3.541 9 O -0.536 6.536 10 O -0.350 6.350 11 C 0.082 3.918 12 C -0.063 4.063 13 H 0.075 0.925 14 C -0.095 4.095 15 C 0.007 3.993 16 C -0.498 4.498 17 C 0.018 3.982 18 N -0.934 5.934 19 Si 0.943 3.057 20 H -0.265 1.265 21 H -0.296 1.296 22 H -0.265 1.265 23 C -0.015 4.015 24 C -0.097 4.097 25 S 0.141 5.859 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.040 0.960 38 H 0.003 0.997 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.040 0.960 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.867 9.288 -16.339 28.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.232 4.232 3 N -0.220 5.220 4 C -0.062 4.062 5 C -0.140 4.140 6 C -0.360 4.360 7 C -0.068 4.068 8 C 0.302 3.698 9 O -0.425 6.425 10 O -0.266 6.266 11 C 0.008 3.992 12 C -0.082 4.082 13 H 0.094 0.906 14 C -0.132 4.132 15 C -0.031 4.031 16 C -0.517 4.517 17 C -0.180 4.180 18 N -0.574 5.574 19 Si 0.769 3.231 20 H -0.190 1.190 21 H -0.223 1.223 22 H -0.191 1.191 23 C -0.053 4.053 24 C -0.134 4.134 25 S 0.398 5.602 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.479 8.676 -15.903 28.098 hybrid contribution 1.008 -0.263 0.585 1.195 sum -20.470 8.413 -15.318 26.916 Atomic orbital electron populations 1.20644 0.82693 1.05204 1.05334 1.27623 1.03248 0.90820 1.01489 1.66212 1.04881 1.32674 1.18200 1.20526 0.90642 0.94802 1.00219 1.20462 0.95392 0.93973 1.04157 1.25114 0.99158 0.96064 1.15651 1.19758 0.89902 1.07256 0.89839 1.24140 0.79586 0.72719 0.93345 1.90674 1.56257 1.47579 1.48012 1.86488 1.31593 1.76941 1.31585 1.23176 0.96448 1.01266 0.78278 1.20930 0.92456 0.97553 0.97258 0.90639 1.21461 0.98340 0.99065 0.94380 1.19333 0.92159 0.94409 0.97175 1.20706 1.34347 0.97480 0.99217 1.25635 0.95347 1.01600 0.95435 1.69970 1.40187 1.32675 1.14556 0.85804 0.78684 0.79910 0.78657 1.19036 1.22325 1.19060 1.19681 0.94079 0.96305 0.95206 1.21501 0.97552 0.95090 0.99295 1.83830 0.96897 1.11722 1.67732 0.87626 0.88364 0.89098 0.88296 0.90875 0.90660 0.82775 0.84031 0.91043 0.92019 0.92754 0.94099 0.97860 0.95692 0.92933 0.95667 0.95733 0.94120 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.46 71.24 0.75 -0.09 16 2 C 0.05 0.86 7.39 88.52 0.65 1.51 16 3 N -0.50 -11.75 10.53 -179.39 -1.89 -13.64 16 4 C 0.07 1.54 6.74 41.52 0.28 1.82 16 5 C -0.08 -1.36 9.82 71.24 0.70 -0.66 16 6 C -0.24 -4.86 5.08 24.64 0.13 -4.73 16 7 C -0.03 -0.47 5.74 29.10 0.17 -0.31 16 8 C 0.46 11.63 7.95 71.24 0.57 12.20 16 9 O -0.54 -17.26 15.78 21.98 0.35 -16.92 16 10 O -0.35 -9.61 9.68 -51.46 -0.50 -10.11 16 11 C 0.08 2.52 4.84 71.98 0.35 2.87 16 12 C -0.06 -2.25 2.33 -10.82 -0.03 -2.27 16 13 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 14 C -0.09 -3.84 5.21 30.66 0.16 -3.68 16 15 C 0.01 0.33 5.96 30.11 0.18 0.51 16 16 C -0.50 -26.05 5.51 -16.17 -0.09 -26.13 16 17 C 0.02 0.97 5.46 84.66 0.46 1.43 16 18 N -0.93 -55.27 12.73 21.45 0.27 -55.00 16 19 Si 0.94 43.61 26.80 68.60 1.84 45.45 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 C -0.02 -0.67 5.59 30.11 0.17 -0.50 16 24 C -0.10 -3.65 5.15 30.66 0.16 -3.49 16 25 S 0.14 2.59 23.18 -56.49 -1.31 1.28 16 26 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.21 7.35 -2.39 -0.02 1.19 16 32 H 0.15 1.70 7.43 -2.38 -0.02 1.68 16 33 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 2.11 8.13 -2.39 -0.02 2.09 16 35 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 36 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.02 1.38 7.08 -2.39 -0.02 1.36 16 40 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 41 H 0.02 1.07 8.14 -2.38 -0.02 1.06 16 42 H 0.02 1.06 5.17 -2.39 -0.01 1.05 16 43 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 2.14 7.71 -2.39 -0.02 2.12 16 Total: -1.00 -68.94 370.30 4.36 -64.58 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.00 Total: 5.88 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 4.60 Total: -21.53 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -1.62 Total: -68.63 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.15 Total: -27.03 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.84 Total: 45.45 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.31 Total: 1.28 kcal Total: -68.94 4.36 -64.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893026372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.916 kcal (2) G-P(sol) polarization free energy of solvation -68.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds