Wall clock time and date at job start Tue Mar 31 2020 13:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47098 * 2 1 4 4 C 1.53000 * 109.46704 * 120.00128 * 2 1 3 5 5 C 1.50697 * 112.99945 * 304.60564 * 4 2 1 6 6 O 1.21293 * 120.00319 * 352.56151 * 5 4 2 7 7 N 1.34777 * 119.99933 * 172.57167 * 5 4 2 8 8 C 1.40089 * 120.00034 * 183.86988 * 7 5 4 9 9 C 1.38701 * 120.07597 * 334.45176 * 8 7 5 10 10 C 1.38186 * 120.02101 * 180.25749 * 9 8 7 11 11 C 1.38559 * 120.17506 * 359.49216 * 10 9 8 12 12 F 1.35095 * 119.92259 * 180.25721 * 11 10 9 13 13 C 1.38342 * 120.15169 * 0.27321 * 11 10 9 14 14 C 1.38739 * 119.97495 * 359.97438 * 13 11 10 15 15 O 1.35780 * 120.08368 * 179.97438 * 14 13 11 16 16 C 1.34815 * 116.99949 * 354.65426 * 15 14 13 17 17 H 1.08000 * 119.99790 * 5.03620 * 16 15 14 18 18 C 1.38636 * 119.99700 * 185.03672 * 16 15 14 19 19 N 1.31569 * 120.00332 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99758 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47133 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47296 * 120.00000 * 20 18 16 23 23 H 1.48505 * 109.46780 * 239.99890 * 20 18 16 24 24 C 1.54030 * 113.92781 * 76.54261 * 4 2 1 25 25 O 1.44172 * 85.52184 * 136.81116 * 24 4 2 26 26 C 1.44179 * 93.34026 * 335.80550 * 25 24 4 27 27 H 1.09001 * 109.46884 * 305.22866 * 1 2 3 28 28 H 1.09002 * 109.47255 * 65.22058 * 1 2 3 29 29 H 1.08993 * 109.47223 * 185.22369 * 1 2 3 30 30 H 1.09001 * 109.46546 * 239.99661 * 2 1 3 31 31 H 1.09008 * 109.47009 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47341 * 299.99806 * 3 2 1 33 33 H 1.09001 * 109.47699 * 60.00367 * 3 2 1 34 34 H 0.97003 * 119.99983 * 3.85886 * 7 5 4 35 35 H 1.08003 * 119.99616 * 0.02735 * 9 8 7 36 36 H 1.08002 * 119.91542 * 179.77242 * 10 9 8 37 37 H 1.08004 * 120.00822 * 179.97438 * 13 11 10 38 38 H 0.96995 * 120.00472 * 180.02562 * 19 18 16 39 39 H 1.08997 * 113.86720 * 250.96121 * 24 4 2 40 40 H 1.09001 * 113.86755 * 22.66637 * 24 4 2 41 41 H 1.08996 * 113.86589 * 270.04624 * 26 25 24 42 42 H 1.09005 * 113.98108 * 138.34935 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.4934 -0.1414 2.5283 6 8 0.8415 0.8811 2.5007 7 7 1.7291 -0.7588 3.7029 8 6 1.1540 -0.2656 4.8813 9 6 0.8070 1.0738 4.9777 10 6 0.2447 1.5603 6.1425 11 6 0.0160 0.7109 7.2130 12 9 -0.5388 1.1908 8.3475 13 6 0.3549 -0.6274 7.1230 14 6 0.9245 -1.1214 5.9584 15 8 1.2584 -2.4343 5.8678 16 6 1.1137 -3.1809 6.9810 17 1 0.6707 -2.7496 7.8665 18 6 1.5336 -4.5021 6.9889 19 7 2.0729 -5.0275 5.9100 20 14 1.3325 -5.5367 8.5312 21 1 0.7031 -4.7177 9.5981 22 1 0.4705 -6.7084 8.2324 23 1 2.6647 -6.0064 8.9894 24 6 1.9392 -2.2562 1.1693 25 8 3.2611 -2.2600 1.7448 26 6 3.5654 -0.9349 1.2650 27 1 -0.3633 0.5928 0.8395 28 1 -0.3634 0.4307 -0.9331 29 1 -0.3633 -1.0233 0.0936 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8900 34 1 2.2968 -1.5448 3.7324 35 1 0.9797 1.7378 4.1435 36 1 -0.0214 2.6043 6.2170 37 1 0.1760 -1.2873 7.9590 38 1 2.3664 -5.9520 5.9154 39 1 1.1744 -2.6824 1.8184 40 1 1.9006 -2.6432 0.1510 41 1 4.0232 -0.9183 0.2759 42 1 4.0906 -0.3114 1.9886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903966223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:50 Heat of formation + Delta-G solvation = -90.322429 kcal Electronic energy + Delta-G solvation = -28331.133926 eV Core-core repulsion = 24193.236602 eV Total energy + Delta-G solvation = -4137.897324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.26056 -41.57502 -39.55338 -38.30521 -36.41608 -35.16797 -33.87002 -32.41044 -29.73614 -29.24634 -27.91597 -27.64042 -26.08494 -25.52685 -23.37734 -22.27498 -21.79766 -20.93162 -19.21285 -18.37209 -17.72680 -17.03311 -16.77470 -15.97284 -15.61772 -15.54299 -15.23703 -15.12923 -14.84982 -14.55614 -14.37004 -14.23690 -13.71839 -13.64545 -13.41824 -13.20312 -13.06121 -12.59557 -12.44008 -12.36326 -12.21023 -11.93683 -11.66802 -11.52164 -11.28744 -11.18717 -10.95260 -10.72134 -10.63147 -10.51794 -10.30072 -9.91356 -9.77792 -9.68485 -9.04859 -8.96286 -7.89905 -7.10294 -6.59323 -4.17999 1.75003 2.10399 2.70912 3.05846 3.08204 3.13607 3.36207 3.54309 3.84920 4.15406 4.36918 4.45950 4.82768 4.88879 4.92670 4.96728 5.10659 5.16143 5.21131 5.25813 5.44142 5.52013 5.58841 5.72520 5.72932 5.74012 5.79940 5.94988 5.98195 6.02141 6.05055 6.06251 6.18638 6.38290 6.46784 6.60798 6.72360 6.90179 6.94584 7.03752 7.18581 7.63660 7.82424 7.90646 8.45833 8.85447 9.45676 10.56952 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011236 B = 0.004921 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.431535 B = 5688.034236 C = 7754.350110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.066 4.066 3 C -0.154 4.154 4 C -0.149 4.149 5 C 0.534 3.466 6 O -0.523 6.523 7 N -0.638 5.638 8 C 0.057 3.943 9 C -0.064 4.064 10 C -0.230 4.230 11 C 0.128 3.872 12 F -0.152 7.152 13 C -0.259 4.259 14 C 0.156 3.844 15 O -0.167 6.167 16 C -0.394 4.394 17 H 0.095 0.905 18 C 0.044 3.956 19 N -0.854 5.854 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.274 1.274 24 C 0.051 3.949 25 O -0.367 6.367 26 C 0.052 3.948 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.423 0.577 35 H 0.155 0.845 36 H 0.122 0.878 37 H 0.143 0.857 38 H 0.272 0.728 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.043 7.348 -10.188 12.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.085 4.085 3 C -0.212 4.212 4 C -0.152 4.152 5 C 0.321 3.679 6 O -0.401 6.401 7 N -0.282 5.282 8 C -0.037 4.037 9 C -0.084 4.084 10 C -0.250 4.250 11 C 0.108 3.892 12 F -0.131 7.131 13 C -0.280 4.280 14 C 0.100 3.900 15 O -0.070 6.070 16 C -0.470 4.470 17 H 0.112 0.888 18 C -0.162 4.162 19 N -0.487 5.487 20 Si 0.766 3.234 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.026 4.026 25 O -0.286 6.286 26 C -0.026 4.026 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.262 0.738 35 H 0.173 0.827 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.916 7.455 -10.302 12.749 hybrid contribution -0.070 -0.851 0.986 1.304 sum 0.846 6.604 -9.316 11.451 Atomic orbital electron populations 1.21988 0.94349 1.02103 1.03032 1.20890 0.96923 0.96512 0.94164 1.21949 1.00158 0.95700 1.03348 1.23979 0.97910 0.97861 0.95452 1.19639 0.80147 0.84406 0.83739 1.90497 1.39847 1.23692 1.86112 1.43282 1.48238 1.31931 1.04765 1.16991 1.08220 0.91975 0.86548 1.21032 0.96896 0.92862 0.97580 1.20525 1.11146 0.99564 0.93753 1.17495 0.97085 0.92267 0.82322 1.91408 1.83275 1.88756 1.49622 1.20838 1.11456 0.94644 1.01018 1.18769 0.93816 0.85355 0.92092 1.83929 1.73174 1.13215 1.36645 1.21397 1.42252 0.92897 0.90434 0.88759 1.25294 0.95730 0.96208 0.98948 1.70030 1.36675 1.14685 1.27354 0.85628 0.78502 0.79460 0.79798 1.18962 1.20029 1.19992 1.24079 0.86590 0.91854 1.00036 1.89826 1.31254 1.34550 1.72925 1.23994 0.93218 0.84597 1.00754 0.89950 0.92940 0.93218 0.90725 0.93349 0.92871 0.90112 0.73791 0.82744 0.85989 0.83951 0.91805 0.88114 0.89050 0.89027 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 8.76 37.16 0.33 -1.50 16 2 C -0.07 -0.71 2.34 -90.62 -0.21 -0.92 16 3 C -0.15 -1.63 8.87 37.15 0.33 -1.30 16 4 C -0.15 -1.89 0.56 -154.58 -0.09 -1.97 16 5 C 0.53 8.65 6.44 -10.99 -0.07 8.58 16 6 O -0.52 -9.02 9.08 5.55 0.05 -8.97 16 7 N -0.64 -11.91 5.10 -9.72 -0.05 -11.96 16 8 C 0.06 1.19 6.47 -83.45 -0.54 0.65 16 9 C -0.06 -1.21 8.79 -39.43 -0.35 -1.55 16 10 C -0.23 -4.25 10.02 -39.48 -0.40 -4.64 16 11 C 0.13 2.57 7.29 -39.42 -0.29 2.28 16 12 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 13 C -0.26 -5.67 9.14 -39.36 -0.36 -6.03 16 14 C 0.16 3.61 6.66 -38.94 -0.26 3.35 16 15 O -0.17 -4.39 9.18 0.00 0.00 -4.39 16 16 C -0.39 -10.42 9.49 30.88 0.29 -10.13 16 17 H 0.10 2.35 5.20 -52.49 -0.27 2.08 16 18 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 19 N -0.85 -23.46 13.67 55.48 0.76 -22.70 16 20 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 C 0.05 0.67 7.74 37.61 0.29 0.96 16 25 O -0.37 -5.55 11.11 -35.23 -0.39 -5.94 16 26 C 0.05 0.60 7.68 37.61 0.29 0.89 16 27 H 0.08 1.16 5.89 -51.93 -0.31 0.86 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.56 7.92 -51.93 -0.41 0.15 16 30 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.05 0.45 7.69 -51.92 -0.40 0.05 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 1.04 5.96 -51.93 -0.31 0.73 16 34 H 0.42 8.29 6.72 -40.82 -0.27 8.02 16 35 H 0.16 2.80 5.52 -52.48 -0.29 2.51 16 36 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 37 H 0.14 3.13 5.64 -52.48 -0.30 2.83 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.10 1.48 8.09 -51.93 -0.42 1.06 16 40 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 42 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -28.78 345.67 -5.60 -34.37 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -5.06 Total: 12.82 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.13 Total: -10.29 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.71 Total: -34.66 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.34 Total: -19.30 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.78 -5.60 -34.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903966223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.949 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds