Wall clock time and date at job start Tue Mar 31 2020 13:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47098 * 2 1 4 4 C 1.53000 * 109.46704 * 120.00128 * 2 1 3 5 5 C 1.50697 * 112.99945 * 304.60564 * 4 2 1 6 6 O 1.21293 * 120.00319 * 352.56151 * 5 4 2 7 7 N 1.34777 * 119.99933 * 172.57167 * 5 4 2 8 8 C 1.40089 * 120.00034 * 183.86988 * 7 5 4 9 9 C 1.38701 * 120.07597 * 334.45176 * 8 7 5 10 10 C 1.38186 * 120.02101 * 180.25749 * 9 8 7 11 11 C 1.38559 * 120.17506 * 359.49216 * 10 9 8 12 12 F 1.35095 * 119.92259 * 180.25721 * 11 10 9 13 13 C 1.38342 * 120.15169 * 0.27321 * 11 10 9 14 14 C 1.38739 * 119.97495 * 359.97438 * 13 11 10 15 15 O 1.35780 * 120.08368 * 179.97438 * 14 13 11 16 16 C 1.34815 * 116.99949 * 354.65426 * 15 14 13 17 17 H 1.08000 * 119.99790 * 5.03620 * 16 15 14 18 18 C 1.38636 * 119.99700 * 185.03672 * 16 15 14 19 19 N 1.31569 * 120.00332 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99758 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47133 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47296 * 120.00000 * 20 18 16 23 23 H 1.48505 * 109.46780 * 239.99890 * 20 18 16 24 24 C 1.54030 * 113.92781 * 76.54261 * 4 2 1 25 25 O 1.44172 * 85.52184 * 136.81116 * 24 4 2 26 26 C 1.44179 * 93.34026 * 335.80550 * 25 24 4 27 27 H 1.09001 * 109.46884 * 305.22866 * 1 2 3 28 28 H 1.09002 * 109.47255 * 65.22058 * 1 2 3 29 29 H 1.08993 * 109.47223 * 185.22369 * 1 2 3 30 30 H 1.09001 * 109.46546 * 239.99661 * 2 1 3 31 31 H 1.09008 * 109.47009 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47341 * 299.99806 * 3 2 1 33 33 H 1.09001 * 109.47699 * 60.00367 * 3 2 1 34 34 H 0.97003 * 119.99983 * 3.85886 * 7 5 4 35 35 H 1.08003 * 119.99616 * 0.02735 * 9 8 7 36 36 H 1.08002 * 119.91542 * 179.77242 * 10 9 8 37 37 H 1.08004 * 120.00822 * 179.97438 * 13 11 10 38 38 H 0.96995 * 120.00472 * 180.02562 * 19 18 16 39 39 H 1.08997 * 113.86720 * 250.96121 * 24 4 2 40 40 H 1.09001 * 113.86755 * 22.66637 * 24 4 2 41 41 H 1.08996 * 113.86589 * 270.04624 * 26 25 24 42 42 H 1.09005 * 113.98108 * 138.34935 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.4934 -0.1414 2.5283 6 8 0.8415 0.8811 2.5007 7 7 1.7291 -0.7588 3.7029 8 6 1.1540 -0.2656 4.8813 9 6 0.8070 1.0738 4.9777 10 6 0.2447 1.5603 6.1425 11 6 0.0160 0.7109 7.2130 12 9 -0.5388 1.1908 8.3475 13 6 0.3549 -0.6274 7.1230 14 6 0.9245 -1.1214 5.9584 15 8 1.2584 -2.4343 5.8678 16 6 1.1137 -3.1809 6.9810 17 1 0.6707 -2.7496 7.8665 18 6 1.5336 -4.5021 6.9889 19 7 2.0729 -5.0275 5.9100 20 14 1.3325 -5.5367 8.5312 21 1 0.7031 -4.7177 9.5981 22 1 0.4705 -6.7084 8.2324 23 1 2.6647 -6.0064 8.9894 24 6 1.9392 -2.2562 1.1693 25 8 3.2611 -2.2600 1.7448 26 6 3.5654 -0.9349 1.2650 27 1 -0.3633 0.5928 0.8395 28 1 -0.3634 0.4307 -0.9331 29 1 -0.3633 -1.0233 0.0936 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8900 34 1 2.2968 -1.5448 3.7324 35 1 0.9797 1.7378 4.1435 36 1 -0.0214 2.6043 6.2170 37 1 0.1760 -1.2873 7.9590 38 1 2.3664 -5.9520 5.9154 39 1 1.1744 -2.6824 1.8184 40 1 1.9006 -2.6432 0.1510 41 1 4.0232 -0.9183 0.2759 42 1 4.0906 -0.3114 1.9886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903966223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:49 Heat of formation + Delta-G solvation = -108.023160 kcal Electronic energy + Delta-G solvation = -28331.901487 eV Core-core repulsion = 24193.236602 eV Total energy + Delta-G solvation = -4138.664885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.85380 -42.73267 -41.10931 -39.76696 -38.05334 -36.30943 -35.21752 -34.32259 -31.24580 -30.70090 -29.30911 -28.54999 -27.42478 -27.01092 -24.74466 -23.85956 -23.03989 -22.19835 -20.53350 -20.18223 -19.38339 -18.34625 -18.13484 -17.16132 -17.02737 -16.92762 -16.67653 -16.64987 -16.24864 -16.01564 -15.79950 -15.42505 -15.38864 -15.31022 -14.97260 -14.41772 -14.07242 -14.00315 -13.81650 -13.49479 -13.45358 -13.40984 -13.17475 -12.80937 -12.59522 -12.43228 -12.30022 -12.14462 -12.04026 -11.64798 -11.55945 -11.25001 -11.23890 -10.89714 -10.85154 -10.32073 -9.58766 -8.76570 -8.51335 -6.18813 0.13315 0.42897 1.35699 1.37789 1.41940 1.52273 2.00015 2.13754 2.54130 2.63538 3.02293 3.14404 3.17830 3.38402 3.42889 3.76985 3.94324 4.00257 4.14285 4.29430 4.30854 4.34521 4.36918 4.53807 4.56165 4.62098 4.80545 4.85860 4.90928 4.93077 4.98499 5.06179 5.09291 5.13447 5.19879 5.22061 5.28481 5.33223 5.46902 5.49748 5.66159 5.91502 6.02191 6.43282 6.91878 7.04827 7.60235 8.68741 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011236 B = 0.004921 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.431535 B = 5688.034236 C = 7754.350110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.061 4.061 3 C -0.152 4.152 4 C -0.143 4.143 5 C 0.532 3.468 6 O -0.531 6.531 7 N -0.648 5.648 8 C 0.058 3.942 9 C -0.064 4.064 10 C -0.203 4.203 11 C 0.121 3.879 12 F -0.145 7.145 13 C -0.264 4.264 14 C 0.127 3.873 15 O -0.203 6.203 16 C -0.418 4.418 17 H 0.099 0.901 18 C -0.009 4.009 19 N -0.902 5.902 20 Si 1.012 2.988 21 H -0.256 1.256 22 H -0.268 1.268 23 H -0.267 1.267 24 C 0.052 3.948 25 O -0.403 6.403 26 C 0.058 3.942 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.417 0.583 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.135 0.865 38 H 0.275 0.725 39 H 0.072 0.928 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.190 8.813 -11.523 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.080 4.080 3 C -0.209 4.209 4 C -0.146 4.146 5 C 0.320 3.680 6 O -0.410 6.410 7 N -0.292 5.292 8 C -0.037 4.037 9 C -0.084 4.084 10 C -0.223 4.223 11 C 0.101 3.899 12 F -0.123 7.123 13 C -0.285 4.285 14 C 0.073 3.927 15 O -0.109 6.109 16 C -0.493 4.493 17 H 0.117 0.883 18 C -0.209 4.209 19 N -0.539 5.539 20 Si 0.832 3.168 21 H -0.180 1.180 22 H -0.193 1.193 23 H -0.192 1.192 24 C -0.025 4.025 25 O -0.322 6.322 26 C -0.019 4.019 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.254 0.746 35 H 0.186 0.814 36 H 0.176 0.824 37 H 0.153 0.847 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.045 8.985 -11.654 14.753 hybrid contribution -0.180 -1.021 1.315 1.674 sum 0.864 7.964 -10.339 13.079 Atomic orbital electron populations 1.21963 0.95228 1.01518 1.02730 1.20977 0.96139 0.96871 0.94015 1.21913 1.01096 0.95186 1.02734 1.23941 0.98931 0.97649 0.94087 1.20360 0.79486 0.83994 0.84119 1.90485 1.40004 1.24126 1.86340 1.43462 1.48507 1.32094 1.05108 1.17322 1.07177 0.92385 0.86798 1.21270 0.96699 0.92134 0.98288 1.20944 1.08056 1.00948 0.92320 1.17490 0.97605 0.91700 0.83137 1.91425 1.83132 1.88480 1.49308 1.20911 1.11386 0.95685 1.00539 1.19168 0.94897 0.85090 0.93551 1.83915 1.75410 1.14551 1.36989 1.21786 1.42970 0.93654 0.90931 0.88349 1.26412 0.95147 0.97068 1.02230 1.70149 1.38784 1.15237 1.29683 0.84610 0.78754 0.77603 0.75811 1.17997 1.19286 1.19237 1.24198 0.85263 0.91964 1.01057 1.89808 1.32099 1.36301 1.73961 1.24250 0.92248 0.82848 1.02533 0.92946 0.91006 0.93455 0.87371 0.91868 0.91342 0.92836 0.74563 0.81352 0.82365 0.84727 0.91598 0.90973 0.85415 0.85113 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 8.76 71.98 0.63 -2.73 16 2 C -0.06 -1.14 2.34 -10.79 -0.03 -1.16 16 3 C -0.15 -2.76 8.87 71.98 0.64 -2.12 16 4 C -0.14 -3.42 0.56 -52.23 -0.03 -3.45 16 5 C 0.53 17.19 6.44 87.66 0.56 17.76 16 6 O -0.53 -18.05 9.08 -3.07 -0.03 -18.08 16 7 N -0.65 -24.95 5.10 -303.05 -1.54 -26.50 16 8 C 0.06 2.47 6.47 38.23 0.25 2.72 16 9 C -0.06 -2.36 8.79 22.37 0.20 -2.16 16 10 C -0.20 -7.07 10.02 22.33 0.22 -6.85 16 11 C 0.12 4.72 7.29 22.37 0.16 4.88 16 12 F -0.14 -5.34 17.26 44.97 0.78 -4.56 16 13 C -0.26 -11.86 9.14 22.41 0.20 -11.65 16 14 C 0.13 6.10 6.66 22.69 0.15 6.25 16 15 O -0.20 -11.33 9.18 -22.92 -0.21 -11.54 16 16 C -0.42 -23.16 9.49 67.91 0.64 -22.52 16 17 H 0.10 5.14 5.20 -2.91 -0.02 5.12 16 18 C -0.01 -0.46 5.49 84.83 0.47 0.00 16 19 N -0.90 -51.88 13.67 21.61 0.30 -51.59 16 20 Si 1.01 41.43 29.55 68.60 2.03 43.46 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 24 C 0.05 1.32 7.74 72.27 0.56 1.88 16 25 O -0.40 -12.06 11.11 -148.98 -1.66 -13.72 16 26 C 0.06 1.23 7.68 72.28 0.56 1.79 16 27 H 0.05 1.44 5.89 -2.39 -0.01 1.43 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.01 7.92 -2.39 -0.02 0.99 16 30 H 0.11 1.39 8.10 -2.39 -0.02 1.37 16 31 H 0.06 0.95 7.69 -2.38 -0.02 0.93 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 1.28 5.96 -2.39 -0.01 1.26 16 34 H 0.42 17.27 6.72 -92.71 -0.62 16.65 16 35 H 0.17 5.83 5.52 -2.91 -0.02 5.81 16 36 H 0.16 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.14 6.14 5.64 -2.91 -0.02 6.13 16 38 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.07 2.23 8.09 -2.39 -0.02 2.21 16 40 H 0.13 2.27 8.07 -2.39 -0.02 2.25 16 41 H 0.13 1.79 8.10 -2.39 -0.02 1.77 16 42 H 0.09 1.98 8.09 -2.38 -0.02 1.96 16 Total: -1.00 -65.83 345.67 5.31 -60.53 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: 0.46 Total: 39.38 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 5.19 Total: -17.37 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -1.25 Total: -78.09 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -1.89 Total: -43.34 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.78 Total: -4.56 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -65.83 5.31 -60.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903966223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.497 kcal (2) G-P(sol) polarization free energy of solvation -65.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds