Wall clock time and date at job start Tue Mar 31 2020 13:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.46972 * 2 1 4 4 C 1.38299 * 120.08906 * 89.99764 * 3 2 1 5 5 C 1.37827 * 120.23251 * 180.27861 * 4 3 2 6 6 C 1.39675 * 120.28072 * 359.48809 * 5 4 3 7 7 C 1.38601 * 119.02746 * 0.50500 * 6 5 4 8 8 C 1.38169 * 120.47359 * 359.75221 * 7 6 5 9 9 C 1.51214 * 108.54272 * 179.77062 * 7 6 5 10 10 C 1.53751 * 104.53750 * 0.02562 * 9 7 6 11 11 N 1.39577 * 129.32344 * 180.23199 * 6 5 4 12 12 S 1.65593 * 124.95711 * 0.23366 * 11 6 5 13 13 O 1.42096 * 104.27644 * 26.07340 * 12 11 6 14 14 O 1.42101 * 104.27941 * 153.93293 * 12 11 6 15 15 C 1.81399 * 104.45309 * 270.00269 * 12 11 6 16 16 C 1.52999 * 109.47582 * 179.97438 * 15 12 11 17 17 C 1.52994 * 109.47114 * 179.97438 * 16 15 12 18 18 C 1.50701 * 109.46909 * 180.02562 * 17 16 15 19 19 H 1.07992 * 120.00287 * 0.02562 * 18 17 16 20 20 C 1.37886 * 119.99867 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99886 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99965 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47442 * 90.00143 * 22 20 18 24 24 H 1.48510 * 109.46933 * 210.00038 * 22 20 18 25 25 H 1.48501 * 109.47316 * 329.99698 * 22 20 18 26 26 H 1.09004 * 109.47636 * 300.00549 * 1 2 3 27 27 H 1.09003 * 109.47017 * 60.01002 * 1 2 3 28 28 H 1.09005 * 109.47315 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47209 * 239.99141 * 2 1 3 30 30 H 1.09003 * 109.47017 * 119.98998 * 2 1 3 31 31 H 1.08002 * 119.88030 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.85960 * 179.72457 * 5 4 3 33 33 H 1.08002 * 119.92325 * 179.97438 * 8 7 6 34 34 H 1.09003 * 110.42327 * 118.76075 * 9 7 6 35 35 H 1.09001 * 110.42624 * 241.23330 * 9 7 6 36 36 H 1.09001 * 110.30609 * 118.92406 * 10 9 7 37 37 H 1.09001 * 110.29954 * 241.07178 * 10 9 7 38 38 H 1.09000 * 109.47015 * 300.00384 * 15 12 11 39 39 H 1.09002 * 109.46891 * 59.99221 * 15 12 11 40 40 H 1.08998 * 109.46977 * 300.00257 * 16 15 12 41 41 H 1.09003 * 109.46708 * 60.00058 * 16 15 12 42 42 H 1.08998 * 109.47435 * 300.00009 * 17 16 15 43 43 H 1.08996 * 109.47347 * 60.00025 * 17 16 15 44 44 H 0.96997 * 120.00332 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2633 2.0746 1.1966 5 6 2.7173 3.3759 1.2001 6 6 2.9577 4.0412 -0.0043 7 6 2.7229 3.3770 -1.1980 8 6 2.2628 2.0742 -1.1962 9 6 3.0530 4.3107 -2.3407 10 6 3.5127 5.6092 -1.6577 11 7 3.4173 5.3413 -0.2202 12 16 3.7991 6.4232 0.9739 13 8 4.1530 5.6096 2.0838 14 8 4.7481 7.2914 0.3699 15 6 2.2473 7.3043 1.2996 16 6 2.4723 8.3443 2.3990 17 6 1.1636 9.0878 2.6732 18 6 1.3854 10.1126 3.7557 19 1 2.3621 10.2228 4.2030 20 6 0.3412 10.9095 4.1750 21 7 0.5348 11.8041 5.1194 22 14 -1.3481 10.7193 3.4009 23 1 -2.1330 9.7169 4.1653 24 1 -2.0544 12.0255 3.4268 25 1 -1.2001 10.2646 1.9950 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.0828 1.5651 2.1317 32 1 2.8915 3.8822 2.1381 33 1 2.0825 1.5653 -2.1316 34 1 3.8566 3.8969 -2.9500 35 1 2.1680 4.4937 -2.9502 36 1 4.5425 5.8373 -1.9329 37 1 2.8554 6.4342 -1.9326 38 1 1.9149 7.8034 0.3894 39 1 1.4867 6.5934 1.6225 40 1 2.8044 7.8448 3.3091 41 1 3.2330 9.0552 2.0764 42 1 0.8319 9.5873 1.7630 43 1 0.4026 8.3772 2.9956 44 1 -0.1998 12.3645 5.4146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908502083.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:13 Heat of formation + Delta-G solvation = -59.373424 kcal Electronic energy + Delta-G solvation = -25004.226078 eV Core-core repulsion = 21433.883979 eV Total energy + Delta-G solvation = -3570.342099 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.70947 -37.46607 -37.15110 -36.01039 -34.89389 -33.38838 -32.45223 -32.26253 -29.16565 -28.78481 -28.44375 -24.23080 -23.73401 -23.01910 -22.43940 -20.69835 -20.45450 -19.28724 -17.86435 -17.06417 -16.67432 -16.41611 -15.70540 -15.58121 -15.56283 -15.11436 -14.48992 -14.23343 -14.09252 -13.76826 -13.66784 -13.15952 -13.00173 -12.90664 -12.65227 -12.52472 -12.39195 -12.27004 -12.19595 -12.09921 -12.02674 -11.88008 -11.66877 -11.42970 -11.21124 -11.08654 -10.99051 -10.81641 -10.50403 -10.14678 -9.90980 -9.65994 -9.30927 -8.95910 -8.61819 -7.95745 -6.11475 -4.11168 0.08770 1.20036 1.23305 2.39059 3.24498 3.32210 3.33937 3.50143 3.78302 3.91218 3.98614 4.37580 4.39219 4.57033 4.73480 4.76772 4.82140 4.84422 4.94408 4.95340 5.11290 5.21520 5.23179 5.27748 5.31952 5.35995 5.54996 5.58911 5.62630 5.64901 5.67348 5.72256 5.92874 5.98709 6.05908 6.12364 6.17903 6.29217 6.41135 6.49752 6.59710 6.87495 7.07222 7.21091 7.67035 8.43911 8.92551 9.49360 11.01746 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014248 B = 0.003227 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.683413 B = 8673.726427 C = 9634.272062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 C -0.112 4.112 4 C -0.083 4.083 5 C -0.148 4.148 6 C 0.162 3.838 7 C -0.134 4.134 8 C -0.075 4.075 9 C -0.081 4.081 10 C 0.113 3.887 11 N -0.943 5.943 12 S 2.598 3.402 13 O -0.942 6.942 14 O -0.945 6.945 15 C -0.609 4.609 16 C -0.097 4.097 17 C -0.004 4.004 18 C -0.528 4.528 19 H 0.075 0.925 20 C 0.068 3.932 21 N -0.899 5.899 22 Si 0.880 3.120 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.266 1.266 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.145 0.855 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.020 0.980 43 H 0.017 0.983 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.762 -22.867 -16.623 28.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.113 4.113 4 C -0.102 4.102 5 C -0.170 4.170 6 C 0.065 3.935 7 C -0.139 4.139 8 C -0.094 4.094 9 C -0.119 4.119 10 C -0.011 4.011 11 N -0.764 5.764 12 S 2.697 3.303 13 O -0.933 6.933 14 O -0.936 6.936 15 C -0.741 4.741 16 C -0.137 4.137 17 C -0.042 4.042 18 C -0.566 4.566 19 H 0.093 0.907 20 C -0.134 4.134 21 N -0.538 5.538 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.191 1.191 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.163 0.837 33 H 0.140 0.860 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.039 0.961 43 H 0.035 0.965 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.628 -22.458 -16.112 27.765 hybrid contribution -1.601 0.261 -0.436 1.680 sum 1.027 -22.197 -16.549 27.706 Atomic orbital electron populations 1.21770 0.94883 1.01527 1.02338 1.20447 0.96015 0.92416 1.02678 1.19724 1.02146 0.96635 0.92808 1.20749 0.98018 0.93537 0.97853 1.21050 1.03345 0.95808 0.96754 1.18048 0.96207 0.84150 0.95106 1.20076 1.04824 0.95138 0.93845 1.20196 0.98940 0.92521 0.97759 1.21066 1.02182 0.92398 0.96220 1.21918 1.03023 0.98549 0.77631 1.56510 1.77589 1.22294 1.20047 1.05688 0.77795 0.73919 0.72889 1.93571 1.82092 1.66480 1.51113 1.93593 1.57601 1.66357 1.76003 1.30601 1.20570 1.12678 1.10297 1.21348 1.02840 0.95181 0.94301 1.19528 0.91745 0.95447 0.97508 1.21115 0.98603 1.17609 1.19287 0.90687 1.25021 0.98936 0.94769 0.94625 1.69906 1.32500 1.22302 1.29073 0.86782 0.84490 0.77620 0.80413 1.20161 1.21202 1.19076 0.92430 0.92621 0.92580 0.91265 0.91067 0.85356 0.83703 0.86014 0.89301 0.89244 0.89335 0.89914 0.85172 0.85080 0.90802 0.90844 0.96127 0.96519 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.08 -0.54 6.07 -27.88 -0.17 -0.71 16 3 C -0.11 -1.04 5.14 -104.60 -0.54 -1.58 16 4 C -0.08 -0.88 9.68 -39.71 -0.38 -1.26 16 5 C -0.15 -1.89 9.37 -39.20 -0.37 -2.26 16 6 C 0.16 2.04 6.59 -83.66 -0.55 1.49 16 7 C -0.13 -1.40 6.23 -104.26 -0.65 -2.05 16 8 C -0.08 -0.70 9.70 -39.61 -0.38 -1.08 16 9 C -0.08 -0.63 6.94 -27.24 -0.19 -0.82 16 10 C 0.11 1.07 7.08 -3.63 -0.03 1.05 16 11 N -0.94 -11.77 3.40 -58.11 -0.20 -11.96 16 12 S 2.60 38.73 5.56 -107.50 -0.60 38.13 16 13 O -0.94 -16.18 15.26 -57.54 -0.88 -17.06 16 14 O -0.95 -16.27 17.56 -57.54 -1.01 -17.28 16 15 C -0.61 -8.95 6.18 37.16 0.23 -8.72 16 16 C -0.10 -1.88 5.16 -26.73 -0.14 -2.02 16 17 C 0.00 -0.08 4.04 -27.89 -0.11 -0.19 16 18 C -0.53 -14.96 9.66 -34.44 -0.33 -15.29 16 19 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 22 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.15 1.97 6.12 -52.49 -0.32 1.65 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.13 1.64 8.14 -51.92 -0.42 1.22 16 39 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 43 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 370.19 15.07 5.58 5.58 Total: -1.00 -34.91 370.19 -11.35 -46.26 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.01 Total: -1.37 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: -3.34 Total: -32.16 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.58 Total: -38.78 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.89 Total: -34.34 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 38.73 SS G_CDS: -0.60 Total: 38.13 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.91 -11.35 -46.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908502083.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.111 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds