Wall clock time and date at job start Tue Mar 31 2020 13:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.46972 * 2 1 4 4 C 1.38299 * 120.08906 * 89.99764 * 3 2 1 5 5 C 1.37827 * 120.23251 * 180.27861 * 4 3 2 6 6 C 1.39675 * 120.28072 * 359.48809 * 5 4 3 7 7 C 1.38601 * 119.02746 * 0.50500 * 6 5 4 8 8 C 1.38169 * 120.47359 * 359.75221 * 7 6 5 9 9 C 1.51214 * 108.54272 * 179.77062 * 7 6 5 10 10 C 1.53751 * 104.53750 * 0.02562 * 9 7 6 11 11 N 1.39577 * 129.32344 * 180.23199 * 6 5 4 12 12 S 1.65593 * 124.95711 * 0.23366 * 11 6 5 13 13 O 1.42096 * 104.27644 * 26.07340 * 12 11 6 14 14 O 1.42101 * 104.27941 * 153.93293 * 12 11 6 15 15 C 1.81399 * 104.45309 * 270.00269 * 12 11 6 16 16 C 1.52999 * 109.47582 * 179.97438 * 15 12 11 17 17 C 1.52994 * 109.47114 * 179.97438 * 16 15 12 18 18 C 1.50701 * 109.46909 * 180.02562 * 17 16 15 19 19 H 1.07992 * 120.00287 * 0.02562 * 18 17 16 20 20 C 1.37886 * 119.99867 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99886 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99965 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47442 * 90.00143 * 22 20 18 24 24 H 1.48510 * 109.46933 * 210.00038 * 22 20 18 25 25 H 1.48501 * 109.47316 * 329.99698 * 22 20 18 26 26 H 1.09004 * 109.47636 * 300.00549 * 1 2 3 27 27 H 1.09003 * 109.47017 * 60.01002 * 1 2 3 28 28 H 1.09005 * 109.47315 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47209 * 239.99141 * 2 1 3 30 30 H 1.09003 * 109.47017 * 119.98998 * 2 1 3 31 31 H 1.08002 * 119.88030 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.85960 * 179.72457 * 5 4 3 33 33 H 1.08002 * 119.92325 * 179.97438 * 8 7 6 34 34 H 1.09003 * 110.42327 * 118.76075 * 9 7 6 35 35 H 1.09001 * 110.42624 * 241.23330 * 9 7 6 36 36 H 1.09001 * 110.30609 * 118.92406 * 10 9 7 37 37 H 1.09001 * 110.29954 * 241.07178 * 10 9 7 38 38 H 1.09000 * 109.47015 * 300.00384 * 15 12 11 39 39 H 1.09002 * 109.46891 * 59.99221 * 15 12 11 40 40 H 1.08998 * 109.46977 * 300.00257 * 16 15 12 41 41 H 1.09003 * 109.46708 * 60.00058 * 16 15 12 42 42 H 1.08998 * 109.47435 * 300.00009 * 17 16 15 43 43 H 1.08996 * 109.47347 * 60.00025 * 17 16 15 44 44 H 0.96997 * 120.00332 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2633 2.0746 1.1966 5 6 2.7173 3.3759 1.2001 6 6 2.9577 4.0412 -0.0043 7 6 2.7229 3.3770 -1.1980 8 6 2.2628 2.0742 -1.1962 9 6 3.0530 4.3107 -2.3407 10 6 3.5127 5.6092 -1.6577 11 7 3.4173 5.3413 -0.2202 12 16 3.7991 6.4232 0.9739 13 8 4.1530 5.6096 2.0838 14 8 4.7481 7.2914 0.3699 15 6 2.2473 7.3043 1.2996 16 6 2.4723 8.3443 2.3990 17 6 1.1636 9.0878 2.6732 18 6 1.3854 10.1126 3.7557 19 1 2.3621 10.2228 4.2030 20 6 0.3412 10.9095 4.1750 21 7 0.5348 11.8041 5.1194 22 14 -1.3481 10.7193 3.4009 23 1 -2.1330 9.7169 4.1653 24 1 -2.0544 12.0255 3.4268 25 1 -1.2001 10.2646 1.9950 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.0828 1.5651 2.1317 32 1 2.8915 3.8822 2.1381 33 1 2.0825 1.5653 -2.1316 34 1 3.8566 3.8969 -2.9500 35 1 2.1680 4.4937 -2.9502 36 1 4.5425 5.8373 -1.9329 37 1 2.8554 6.4342 -1.9326 38 1 1.9149 7.8034 0.3894 39 1 1.4867 6.5934 1.6225 40 1 2.8044 7.8448 3.3091 41 1 3.2330 9.0552 2.0764 42 1 0.8319 9.5873 1.7630 43 1 0.4026 8.3772 2.9956 44 1 -0.1998 12.3645 5.4146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908502083.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:12 Heat of formation + Delta-G solvation = -81.190813 kcal Electronic energy + Delta-G solvation = -25005.172151 eV Core-core repulsion = 21433.883979 eV Total energy + Delta-G solvation = -3571.288172 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47960 -38.52046 -38.08955 -37.28459 -36.59430 -34.30693 -34.02593 -33.21823 -30.25655 -29.88621 -29.47011 -25.53499 -24.80543 -23.82325 -23.26309 -22.18970 -21.35264 -20.33758 -19.08242 -18.88745 -17.70178 -17.58787 -16.78487 -16.52931 -16.28599 -16.18869 -16.00827 -15.81911 -14.91270 -14.82366 -14.44668 -14.29127 -14.15966 -13.87516 -13.80349 -13.65360 -13.44910 -13.38880 -13.29970 -13.26228 -13.15080 -12.80944 -12.75843 -12.72547 -12.66253 -12.01569 -11.89360 -11.79508 -11.70670 -11.53121 -11.50435 -11.43698 -11.05930 -10.80515 -9.71969 -8.76897 -8.32730 -6.39071 -1.08079 0.42209 0.43834 1.34575 1.34992 1.37039 1.48613 2.33730 2.53298 2.81795 2.83861 3.02247 3.19558 3.58274 3.64143 3.79269 3.91510 4.04679 4.17874 4.20038 4.24144 4.28504 4.47419 4.51738 4.57840 4.63091 4.66788 4.72611 4.81066 4.84282 4.89186 5.02650 5.04820 5.11354 5.16830 5.26294 5.27471 5.34592 5.39271 5.47410 5.50411 5.58379 5.61563 5.76109 6.11236 6.21553 6.68916 7.25647 8.84224 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014248 B = 0.003227 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.683413 B = 8673.726427 C = 9634.272062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.109 4.109 4 C -0.094 4.094 5 C -0.173 4.173 6 C 0.131 3.869 7 C -0.134 4.134 8 C -0.076 4.076 9 C -0.074 4.074 10 C 0.097 3.903 11 N -0.941 5.941 12 S 2.616 3.384 13 O -0.973 6.973 14 O -0.973 6.973 15 C -0.602 4.602 16 C -0.102 4.102 17 C -0.004 4.004 18 C -0.545 4.545 19 H 0.031 0.969 20 C 0.002 3.998 21 N -0.951 5.951 22 Si 0.954 3.046 23 H -0.265 1.265 24 H -0.283 1.283 25 H -0.239 1.239 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.125 0.875 33 H 0.151 0.849 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.159 0.841 39 H 0.150 0.850 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.302 -25.245 -20.086 32.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.110 4.110 4 C -0.113 4.113 5 C -0.195 4.195 6 C 0.035 3.965 7 C -0.138 4.138 8 C -0.094 4.094 9 C -0.112 4.112 10 C -0.026 4.026 11 N -0.765 5.765 12 S 2.716 3.284 13 O -0.964 6.964 14 O -0.963 6.963 15 C -0.734 4.734 16 C -0.142 4.142 17 C -0.042 4.042 18 C -0.583 4.583 19 H 0.049 0.951 20 C -0.195 4.195 21 N -0.591 5.591 22 Si 0.776 3.224 23 H -0.190 1.190 24 H -0.209 1.209 25 H -0.162 1.162 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.157 0.843 32 H 0.143 0.857 33 H 0.169 0.831 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.177 0.823 39 H 0.168 0.832 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.587 -24.850 -19.581 31.644 hybrid contribution -0.877 0.934 0.673 1.447 sum -0.290 -23.917 -18.909 30.490 Atomic orbital electron populations 1.21756 0.94485 1.02270 1.01858 1.20503 0.96224 0.90900 1.03751 1.20067 1.00866 0.97700 0.92382 1.20956 0.98132 0.92989 0.99216 1.21088 1.05070 0.96944 0.96403 1.18278 0.97906 0.84377 0.95942 1.20450 1.03798 0.95678 0.93899 1.20568 0.97862 0.92141 0.98868 1.21166 1.03844 0.90662 0.95486 1.22322 1.03907 1.00485 0.75926 1.56160 1.77810 1.21850 1.20717 1.04856 0.77467 0.73545 0.72537 1.93531 1.82760 1.67170 1.52923 1.93551 1.58846 1.67380 1.76540 1.30483 1.21187 1.11910 1.09807 1.21204 1.00921 0.96148 0.95907 1.19491 0.93972 0.94705 0.96067 1.21525 0.96994 1.19191 1.20609 0.95072 1.26099 1.04064 0.94174 0.95126 1.70076 1.34221 1.23728 1.31100 0.85608 0.78100 0.77941 0.80717 1.18993 1.20923 1.16234 0.93443 0.92575 0.91262 0.89642 0.90612 0.84326 0.85748 0.83094 0.87426 0.86709 0.89317 0.87779 0.82331 0.83166 0.91703 0.91460 0.94792 0.95204 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.89 71.98 0.71 -0.81 16 2 C -0.08 -0.84 6.07 29.85 0.18 -0.66 16 3 C -0.11 -1.79 5.14 -19.85 -0.10 -1.89 16 4 C -0.09 -1.94 9.68 22.19 0.21 -1.72 16 5 C -0.17 -4.46 9.37 22.52 0.21 -4.25 16 6 C 0.13 3.17 6.59 38.34 0.25 3.43 16 7 C -0.13 -2.43 6.23 -19.63 -0.12 -2.56 16 8 C -0.08 -1.16 9.70 22.25 0.22 -0.94 16 9 C -0.07 -0.89 6.94 30.26 0.21 -0.68 16 10 C 0.10 1.60 7.08 86.62 0.61 2.21 16 11 N -0.94 -22.43 3.40 -337.76 -1.15 -23.58 16 12 S 2.62 78.04 5.56 -56.49 -0.31 77.72 16 13 O -0.97 -34.76 15.26 -127.65 -1.95 -36.71 16 14 O -0.97 -33.65 17.56 -127.65 -2.24 -35.89 16 15 C -0.60 -16.85 6.18 71.98 0.44 -16.41 16 16 C -0.10 -3.97 5.16 30.59 0.16 -3.82 16 17 C 0.00 -0.17 4.04 29.85 0.12 -0.05 16 18 C -0.55 -31.73 9.66 25.60 0.25 -31.49 16 19 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 20 C 0.00 0.13 5.47 84.66 0.46 0.60 16 21 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 22 Si 0.95 43.32 27.47 68.60 1.88 45.20 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 26 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16 30 H 0.08 0.77 8.09 -2.39 -0.02 0.76 16 31 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.12 3.60 6.12 -2.91 -0.02 3.59 16 33 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.16 3.52 8.14 -2.39 -0.02 3.50 16 39 H 0.15 3.65 8.14 -2.39 -0.02 3.63 16 40 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 43 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 44 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -78.63 370.19 1.27 -77.36 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.92 Total: 14.75 kcal Atomic # 6 Polarization: -62.85 SS G_CDS: 3.82 Total: -59.03 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -0.85 Total: -83.41 kcal Atomic # 8 Polarization: -68.41 SS G_CDS: -4.19 Total: -72.60 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Atomic # 16 Polarization: 78.04 SS G_CDS: -0.31 Total: 77.72 kcal Total: -78.63 1.27 -77.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908502083.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.832 kcal (2) G-P(sol) polarization free energy of solvation -78.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds