Wall clock time and date at job start Tue Mar 31 2020 14:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47429 * 2 1 4 4 C 1.52995 * 109.47164 * 239.99443 * 2 1 3 5 5 O 1.42909 * 109.46863 * 119.99963 * 2 1 3 6 6 C 1.42898 * 113.99970 * 60.00014 * 5 2 1 7 7 C 1.50698 * 109.46775 * 180.02562 * 6 5 2 8 8 C 1.38130 * 120.03787 * 0.02562 * 7 6 5 9 9 C 1.38265 * 120.07246 * 179.97438 * 8 7 6 10 10 C 1.38300 * 120.13736 * 0.03840 * 9 8 7 11 11 C 1.38085 * 120.07676 * 0.02562 * 10 9 8 12 12 C 1.38851 * 120.03708 * 179.72198 * 7 6 5 13 13 N 1.39931 * 120.06820 * 0.02562 * 12 7 6 14 14 C 1.34775 * 120.00431 * 145.03701 * 13 12 7 15 15 O 1.21293 * 119.99635 * 4.48194 * 14 13 12 16 16 C 1.50696 * 120.00375 * 184.48582 * 14 13 12 17 17 S 1.81000 * 109.47020 * 180.02562 * 16 14 13 18 18 C 1.76206 * 100.00028 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99746 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99773 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00579 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99535 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47117 * 90.00045 * 22 20 18 24 24 H 1.48500 * 109.47342 * 209.99686 * 22 20 18 25 25 H 1.48497 * 109.47504 * 330.00130 * 22 20 18 26 26 H 1.08997 * 109.47078 * 300.00551 * 1 2 3 27 27 H 1.09000 * 109.46543 * 60.00460 * 1 2 3 28 28 H 1.09004 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47365 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.46785 * 299.99819 * 3 2 1 31 31 H 1.09001 * 109.47339 * 59.99192 * 3 2 1 32 32 H 1.08994 * 109.47544 * 300.00164 * 4 2 1 33 33 H 1.09000 * 109.47311 * 60.00567 * 4 2 1 34 34 H 1.09006 * 109.47145 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.47004 * 299.99937 * 6 5 2 36 36 H 1.08998 * 109.47493 * 60.00171 * 6 5 2 37 37 H 1.07997 * 119.96374 * 359.97189 * 8 7 6 38 38 H 1.07998 * 119.92981 * 180.02562 * 9 8 7 39 39 H 1.08001 * 119.95912 * 179.97438 * 10 9 8 40 40 H 1.07993 * 120.04092 * 180.02562 * 11 10 9 41 41 H 0.97001 * 119.99782 * 325.03908 * 13 12 7 42 42 H 1.08997 * 109.47120 * 299.99605 * 16 14 13 43 43 H 1.09000 * 109.47025 * 60.00137 * 16 14 13 44 44 H 0.97001 * 120.00917 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0063 -0.6737 1.1669 6 6 1.5846 -2.0355 1.2646 7 6 2.1409 -2.6443 2.5259 8 6 2.9261 -1.8855 3.3720 9 6 3.4364 -2.4432 4.5297 10 6 3.1634 -3.7620 4.8440 11 6 2.3803 -4.5263 4.0018 12 6 1.8597 -3.9667 2.8421 13 7 1.0599 -4.7365 1.9901 14 6 1.3122 -6.0511 1.8339 15 8 2.1800 -6.5844 2.4926 16 6 0.5165 -6.8585 0.8411 17 16 1.0867 -8.5762 0.8651 18 6 0.0174 -9.2706 -0.3511 19 1 -0.7099 -8.6473 -0.8499 20 6 0.1098 -10.6188 -0.6679 21 7 0.9965 -11.3784 -0.0604 22 14 -1.0243 -11.3551 -1.9567 23 1 -0.3870 -11.2519 -3.2941 24 1 -1.2756 -12.7834 -1.6371 25 1 -2.3120 -10.6155 -1.9637 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6768 -0.2076 -2.1392 34 1 3.1301 -0.7217 -1.2489 35 1 0.4957 -2.0777 1.2908 36 1 1.9491 -2.5917 0.4009 37 1 3.1415 -0.8555 3.1289 38 1 4.0496 -1.8477 5.1897 39 1 3.5639 -4.1948 5.7488 40 1 2.1672 -5.5560 4.2480 41 1 0.3238 -4.3238 1.5118 42 1 -0.5399 -6.8231 1.1075 43 1 0.6535 -6.4437 -0.1575 44 1 1.0614 -12.3205 -0.2821 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928393946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:51 Heat of formation + Delta-G solvation = -64.097017 kcal Electronic energy + Delta-G solvation = -24505.372317 eV Core-core repulsion = 20934.825389 eV Total energy + Delta-G solvation = -3570.546929 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.53915 -39.30969 -38.14081 -34.66174 -34.02911 -32.48176 -31.31803 -30.58535 -28.47793 -27.91682 -27.73805 -25.94460 -25.52392 -22.98663 -21.39668 -20.37424 -20.10551 -18.13390 -17.48615 -16.77098 -16.47791 -16.22010 -15.79446 -15.30337 -14.85479 -14.80255 -14.42012 -14.35505 -14.26847 -13.75481 -13.60800 -13.36633 -13.08153 -12.88888 -12.63522 -12.54411 -12.33637 -12.13562 -12.08038 -12.04102 -11.61462 -11.55384 -11.20860 -11.10338 -11.07160 -10.82013 -10.74507 -10.23196 -9.91644 -9.88402 -9.46466 -9.11494 -8.67228 -8.32063 -8.03141 -6.56979 -6.26704 -3.98301 1.27919 1.48046 2.85507 2.92650 3.19164 3.23581 3.27180 3.29790 3.57864 3.83779 4.14870 4.42715 4.49474 4.65850 4.76581 4.91555 4.97384 5.03651 5.08738 5.15824 5.18239 5.21219 5.25074 5.34743 5.39546 5.44492 5.48094 5.49492 5.54616 5.68466 5.69199 5.73929 5.77595 5.90360 5.93357 6.01850 6.11857 6.35512 6.41969 6.55308 6.65122 7.02472 7.11122 7.46261 7.54712 8.29914 8.37498 9.18658 10.80697 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013487 B = 0.002899 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.639817 B = 9657.092594 C =11419.483177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.370 6.370 6 C 0.104 3.896 7 C -0.121 4.121 8 C -0.081 4.081 9 C -0.143 4.143 10 C -0.102 4.102 11 C -0.121 4.121 12 C 0.160 3.840 13 N -0.682 5.682 14 C 0.532 3.468 15 O -0.494 6.494 16 C -0.154 4.154 17 S -0.055 6.055 18 C -0.537 4.537 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.132 0.868 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.144 0.856 41 H 0.406 0.594 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 25.250 2.371 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.068 3.932 3 C -0.194 4.194 4 C -0.239 4.239 5 O -0.290 6.290 6 C 0.028 3.972 7 C -0.124 4.124 8 C -0.100 4.100 9 C -0.162 4.162 10 C -0.120 4.120 11 C -0.141 4.141 12 C 0.066 3.934 13 N -0.328 5.328 14 C 0.319 3.681 15 O -0.366 6.366 16 C -0.305 4.305 17 S 0.171 5.829 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.150 0.850 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.162 0.838 41 H 0.242 0.758 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.409 24.193 3.565 24.495 hybrid contribution -2.257 0.132 -2.090 3.079 sum -0.848 24.325 1.476 24.384 Atomic orbital electron populations 1.22449 0.95693 1.02698 1.02894 1.21503 0.93144 0.93195 0.85376 1.21749 1.02020 0.93200 1.02437 1.22455 1.02426 1.01197 0.97774 1.87922 1.74510 1.23472 1.43067 1.21081 0.97735 0.82998 0.95432 1.19406 1.02319 0.93378 0.97308 1.20746 0.95919 0.99918 0.93375 1.21115 1.01696 0.95538 0.97863 1.21087 0.97802 0.93891 0.99266 1.21339 0.99065 1.01484 0.92259 1.17511 0.95407 0.89790 0.90739 1.43667 1.33253 1.09605 1.46322 1.20530 0.83546 0.80794 0.83209 1.90705 1.31456 1.69495 1.44925 1.23548 1.02663 1.04376 0.99881 1.85433 1.49581 0.93953 1.53935 1.22849 1.22781 0.97172 1.25718 0.90857 1.24992 0.95896 0.95957 0.96695 1.70004 1.33123 1.06670 1.40397 0.86157 0.80265 0.78301 0.80719 1.20237 1.20709 1.19670 0.91642 0.91428 0.92076 0.91741 0.91145 0.91803 0.91979 0.91438 0.91555 0.92265 0.91694 0.85024 0.86194 0.85838 0.83843 0.75840 0.88826 0.88879 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 8.25 37.16 0.31 -0.95 16 2 C 0.11 0.86 1.14 -90.62 -0.10 0.76 16 3 C -0.14 -0.91 8.84 37.15 0.33 -0.59 16 4 C -0.18 -1.41 8.25 37.16 0.31 -1.11 16 5 O -0.37 -3.82 8.47 -35.23 -0.30 -4.12 16 6 C 0.10 1.09 4.62 36.00 0.17 1.25 16 7 C -0.12 -1.53 5.90 -104.44 -0.62 -2.14 16 8 C -0.08 -0.97 9.37 -39.61 -0.37 -1.34 16 9 C -0.14 -1.64 10.04 -39.55 -0.40 -2.03 16 10 C -0.10 -1.29 10.04 -39.61 -0.40 -1.69 16 11 C -0.12 -1.83 8.70 -39.39 -0.34 -2.18 16 12 C 0.16 2.30 6.29 -83.69 -0.53 1.77 16 13 N -0.68 -9.52 5.03 -9.86 -0.05 -9.57 16 14 C 0.53 9.68 7.69 -10.99 -0.08 9.60 16 15 O -0.49 -10.77 13.27 5.55 0.07 -10.70 16 16 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 17 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 18 C -0.54 -14.98 9.50 30.94 0.29 -14.68 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.08 5.49 -17.44 -0.10 1.99 16 21 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 22 Si 0.92 21.08 29.55 -169.99 -5.02 16.05 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.51 6.54 -51.93 -0.34 0.17 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.53 6.14 -51.93 -0.32 0.22 16 36 H 0.07 0.70 6.42 -51.93 -0.33 0.36 16 37 H 0.13 1.43 7.00 -52.49 -0.37 1.06 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.14 2.44 6.20 -52.49 -0.33 2.11 16 41 H 0.41 4.30 7.96 -40.82 -0.32 3.97 16 42 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 374.03 15.07 5.64 5.64 Total: -1.00 -33.28 374.03 -8.99 -42.27 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.54 Total: 3.26 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -1.31 Total: -14.09 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.68 Total: -34.64 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.22 Total: -14.82 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.28 -8.99 -42.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928393946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.828 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds