Wall clock time and date at job start Tue Mar 31 2020 14:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47429 * 2 1 4 4 C 1.52995 * 109.47164 * 239.99443 * 2 1 3 5 5 O 1.42909 * 109.46863 * 119.99963 * 2 1 3 6 6 C 1.42898 * 113.99970 * 60.00014 * 5 2 1 7 7 C 1.50698 * 109.46775 * 180.02562 * 6 5 2 8 8 C 1.38130 * 120.03787 * 0.02562 * 7 6 5 9 9 C 1.38265 * 120.07246 * 179.97438 * 8 7 6 10 10 C 1.38300 * 120.13736 * 0.03840 * 9 8 7 11 11 C 1.38085 * 120.07676 * 0.02562 * 10 9 8 12 12 C 1.38851 * 120.03708 * 179.72198 * 7 6 5 13 13 N 1.39931 * 120.06820 * 0.02562 * 12 7 6 14 14 C 1.34775 * 120.00431 * 145.03701 * 13 12 7 15 15 O 1.21293 * 119.99635 * 4.48194 * 14 13 12 16 16 C 1.50696 * 120.00375 * 184.48582 * 14 13 12 17 17 S 1.81000 * 109.47020 * 180.02562 * 16 14 13 18 18 C 1.76206 * 100.00028 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99746 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99773 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00579 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99535 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47117 * 90.00045 * 22 20 18 24 24 H 1.48500 * 109.47342 * 209.99686 * 22 20 18 25 25 H 1.48497 * 109.47504 * 330.00130 * 22 20 18 26 26 H 1.08997 * 109.47078 * 300.00551 * 1 2 3 27 27 H 1.09000 * 109.46543 * 60.00460 * 1 2 3 28 28 H 1.09004 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47365 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.46785 * 299.99819 * 3 2 1 31 31 H 1.09001 * 109.47339 * 59.99192 * 3 2 1 32 32 H 1.08994 * 109.47544 * 300.00164 * 4 2 1 33 33 H 1.09000 * 109.47311 * 60.00567 * 4 2 1 34 34 H 1.09006 * 109.47145 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.47004 * 299.99937 * 6 5 2 36 36 H 1.08998 * 109.47493 * 60.00171 * 6 5 2 37 37 H 1.07997 * 119.96374 * 359.97189 * 8 7 6 38 38 H 1.07998 * 119.92981 * 180.02562 * 9 8 7 39 39 H 1.08001 * 119.95912 * 179.97438 * 10 9 8 40 40 H 1.07993 * 120.04092 * 180.02562 * 11 10 9 41 41 H 0.97001 * 119.99782 * 325.03908 * 13 12 7 42 42 H 1.08997 * 109.47120 * 299.99605 * 16 14 13 43 43 H 1.09000 * 109.47025 * 60.00137 * 16 14 13 44 44 H 0.97001 * 120.00917 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0063 -0.6737 1.1669 6 6 1.5846 -2.0355 1.2646 7 6 2.1409 -2.6443 2.5259 8 6 2.9261 -1.8855 3.3720 9 6 3.4364 -2.4432 4.5297 10 6 3.1634 -3.7620 4.8440 11 6 2.3803 -4.5263 4.0018 12 6 1.8597 -3.9667 2.8421 13 7 1.0599 -4.7365 1.9901 14 6 1.3122 -6.0511 1.8339 15 8 2.1800 -6.5844 2.4926 16 6 0.5165 -6.8585 0.8411 17 16 1.0867 -8.5762 0.8651 18 6 0.0174 -9.2706 -0.3511 19 1 -0.7099 -8.6473 -0.8499 20 6 0.1098 -10.6188 -0.6679 21 7 0.9965 -11.3784 -0.0604 22 14 -1.0243 -11.3551 -1.9567 23 1 -0.3870 -11.2519 -3.2941 24 1 -1.2756 -12.7834 -1.6371 25 1 -2.3120 -10.6155 -1.9637 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6768 -0.2076 -2.1392 34 1 3.1301 -0.7217 -1.2489 35 1 0.4957 -2.0777 1.2908 36 1 1.9491 -2.5917 0.4009 37 1 3.1415 -0.8555 3.1289 38 1 4.0496 -1.8477 5.1897 39 1 3.5639 -4.1948 5.7488 40 1 2.1672 -5.5560 4.2480 41 1 0.3238 -4.3238 1.5118 42 1 -0.5399 -6.8231 1.1075 43 1 0.6535 -6.4437 -0.1575 44 1 1.0614 -12.3205 -0.2821 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928393946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:50 Heat of formation + Delta-G solvation = -83.991597 kcal Electronic energy + Delta-G solvation = -24506.235011 eV Core-core repulsion = 20934.825389 eV Total energy + Delta-G solvation = -3571.409623 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71205 -40.18660 -39.21639 -35.90753 -34.75133 -34.59635 -32.25410 -31.90238 -29.71976 -28.55591 -28.29412 -27.67513 -26.75530 -24.11745 -22.37970 -21.65403 -20.81465 -19.91192 -18.75630 -18.01227 -17.40632 -17.18932 -16.88942 -16.73345 -16.41535 -16.13624 -15.55632 -15.45607 -15.12151 -15.02271 -14.75062 -14.44886 -14.26187 -14.02487 -13.83482 -13.49370 -13.18315 -13.05246 -12.90437 -12.88300 -12.78994 -12.63984 -12.62734 -12.47327 -12.24831 -12.16206 -11.76057 -11.46168 -11.36163 -11.15183 -10.90120 -10.63483 -10.30826 -9.67300 -9.12113 -8.68502 -8.35895 -6.14290 0.24377 0.44189 1.21551 1.42217 1.43725 1.51110 1.55859 2.10300 2.25524 2.56979 2.82714 2.98735 3.26347 3.72348 3.79290 3.92688 3.98981 4.05638 4.12195 4.15890 4.23466 4.29726 4.40937 4.44525 4.49613 4.57130 4.65149 4.66004 4.73121 4.83824 4.88752 4.96652 4.97488 5.09326 5.18176 5.34437 5.36695 5.38110 5.40267 5.41304 5.54480 5.62686 6.07067 6.18751 6.29419 6.30798 7.03954 7.05795 8.73247 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013487 B = 0.002899 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.639817 B = 9657.092594 C =11419.483177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.100 3.900 3 C -0.136 4.136 4 C -0.181 4.181 5 O -0.382 6.382 6 C 0.106 3.894 7 C -0.119 4.119 8 C -0.085 4.085 9 C -0.133 4.133 10 C -0.108 4.108 11 C -0.145 4.145 12 C 0.138 3.862 13 N -0.659 5.659 14 C 0.535 3.465 15 O -0.537 6.537 16 C -0.129 4.129 17 S -0.146 6.146 18 C -0.546 4.546 19 H 0.085 0.915 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.257 1.257 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.140 0.860 40 H 0.116 0.884 41 H 0.424 0.576 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.513 27.848 1.183 27.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.061 3.939 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.303 6.303 6 C 0.030 3.970 7 C -0.121 4.121 8 C -0.103 4.103 9 C -0.152 4.152 10 C -0.127 4.127 11 C -0.165 4.165 12 C 0.044 3.956 13 N -0.306 5.306 14 C 0.322 3.678 15 O -0.413 6.413 16 C -0.280 4.280 17 S 0.082 5.918 18 C -0.694 4.694 19 H 0.103 0.897 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.181 1.181 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.134 0.866 41 H 0.262 0.738 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.077 26.853 2.374 26.958 hybrid contribution -1.796 -0.476 -1.647 2.483 sum -1.719 26.376 0.726 26.442 Atomic orbital electron populations 1.22441 0.94766 1.02840 1.03553 1.21722 0.93950 0.93596 0.84601 1.21771 1.01715 0.92454 1.03321 1.22461 1.01860 1.01071 0.98448 1.87895 1.74969 1.23145 1.44243 1.21042 0.98539 0.83286 0.94121 1.19615 1.01831 0.92523 0.98156 1.21023 0.95447 1.00515 0.93343 1.21467 1.00822 0.95010 0.97868 1.21313 0.97354 0.94470 0.99544 1.21301 1.00748 1.00729 0.93751 1.17604 0.96553 0.90559 0.90878 1.43275 1.33444 1.08033 1.45840 1.20301 0.82886 0.81956 0.82619 1.90703 1.33390 1.70682 1.46509 1.23361 1.03625 0.99362 1.01634 1.85620 1.51256 1.00354 1.54614 1.23200 1.22780 0.97786 1.25589 0.89699 1.26123 0.97527 0.96463 0.99032 1.70172 1.35209 1.07048 1.42360 0.84954 0.78282 0.77287 0.77469 1.19335 1.20423 1.18076 0.91768 0.90028 0.92183 0.92263 0.89409 0.91798 0.92583 0.89912 0.92454 0.90596 0.91970 0.83636 0.83116 0.84193 0.86620 0.73765 0.86562 0.86655 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 8.25 71.98 0.59 -1.45 16 2 C 0.10 1.39 1.14 -10.80 -0.01 1.38 16 3 C -0.14 -1.51 8.84 71.98 0.64 -0.87 16 4 C -0.18 -2.49 8.25 71.98 0.59 -1.89 16 5 O -0.38 -7.12 8.47 -148.98 -1.26 -8.38 16 6 C 0.11 2.03 4.62 71.24 0.33 2.36 16 7 C -0.12 -2.82 5.90 -19.74 -0.12 -2.93 16 8 C -0.08 -1.85 9.37 22.25 0.21 -1.64 16 9 C -0.13 -2.76 10.04 22.29 0.22 -2.53 16 10 C -0.11 -2.67 10.04 22.25 0.22 -2.45 16 11 C -0.14 -4.47 8.70 22.39 0.19 -4.28 16 12 C 0.14 3.91 6.29 38.15 0.24 4.15 16 13 N -0.66 -17.95 5.03 -303.50 -1.53 -19.47 16 14 C 0.53 19.64 7.69 87.66 0.67 20.31 16 15 O -0.54 -24.46 13.27 -3.07 -0.04 -24.50 16 16 C -0.13 -4.92 6.16 71.23 0.44 -4.48 16 17 S -0.15 -7.92 20.57 -56.49 -1.16 -9.08 16 18 C -0.55 -30.55 9.50 67.95 0.65 -29.90 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 20 C 0.01 0.75 5.49 84.86 0.47 1.22 16 21 N -0.91 -55.54 13.22 21.65 0.29 -55.25 16 22 Si 1.00 42.97 29.55 68.60 2.03 45.00 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.69 6.54 -2.38 -0.02 0.68 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.83 6.54 -2.39 -0.02 0.81 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.08 1.19 6.14 -2.39 -0.01 1.17 16 36 H 0.06 1.23 6.42 -2.39 -0.02 1.22 16 37 H 0.15 2.78 7.00 -2.91 -0.02 2.76 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 40 H 0.12 4.21 6.20 -2.91 -0.02 4.19 16 41 H 0.42 8.22 7.96 -92.71 -0.74 7.48 16 42 H 0.12 3.92 8.14 -2.40 -0.02 3.90 16 43 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 44 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -74.53 374.03 3.93 -70.60 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.27 Total: 24.10 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 5.34 Total: -23.01 kcal Atomic # 7 Polarization: -73.48 SS G_CDS: -1.24 Total: -74.72 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -1.30 Total: -32.88 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -74.53 3.93 -70.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928393946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.396 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds