Wall clock time and date at job start Tue Mar 31 2020 14:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 C 1.53000 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47223 * 54.99935 * 4 3 2 6 6 O 1.42899 * 109.47051 * 295.00016 * 4 3 2 7 7 C 1.50699 * 109.47240 * 175.00170 * 4 3 2 8 8 O 1.21294 * 120.00152 * 115.00116 * 7 4 3 9 9 N 1.34774 * 119.99940 * 295.00339 * 7 4 3 10 10 C 1.40140 * 120.00023 * 174.42955 * 9 7 4 11 11 C 1.38647 * 120.09967 * 335.18803 * 10 9 7 12 12 C 1.38248 * 120.00968 * 179.70564 * 11 10 9 13 13 C 1.38299 * 120.20801 * 0.59443 * 12 11 10 14 14 C 1.38194 * 120.19939 * 359.68488 * 13 12 11 15 15 C 1.38789 * 119.98965 * 0.02562 * 14 13 12 16 16 S 1.76200 * 120.10208 * 179.97438 * 15 14 13 17 17 C 1.81394 * 103.00264 * 4.85523 * 16 15 14 18 18 H 1.09004 * 109.47308 * 49.86855 * 17 16 15 19 19 C 1.53002 * 109.47416 * 169.87263 * 17 16 15 20 20 C 1.50704 * 109.47111 * 289.87357 * 17 16 15 21 21 H 1.07999 * 119.99590 * 359.97438 * 20 17 16 22 22 C 1.37869 * 120.00097 * 180.02562 * 20 17 16 23 23 N 1.31512 * 120.00227 * 359.97438 * 22 20 17 24 24 Si 1.86802 * 120.00179 * 179.97438 * 22 20 17 25 25 H 1.48499 * 109.46950 * 59.99486 * 24 22 20 26 26 H 1.48499 * 109.47160 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46723 * 300.00000 * 24 22 20 28 28 H 1.08993 * 109.47261 * 299.99935 * 1 2 3 29 29 H 1.09004 * 109.46953 * 60.00185 * 1 2 3 30 30 H 1.09001 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47114 * 240.00168 * 2 1 3 32 32 H 1.08997 * 109.47199 * 120.00434 * 2 1 3 33 33 H 1.08998 * 109.46958 * 60.00388 * 3 2 1 34 34 H 1.08995 * 109.47282 * 299.99760 * 3 2 1 35 35 H 0.96697 * 114.00266 * 300.00175 * 6 4 3 36 36 H 0.97000 * 119.99654 * 354.42409 * 9 7 4 37 37 H 1.08006 * 119.99293 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.89863 * 180.30193 * 12 11 10 39 39 H 1.07996 * 119.89764 * 179.70448 * 13 12 11 40 40 H 1.08004 * 120.00369 * 179.97438 * 14 13 12 41 41 H 1.08995 * 109.47163 * 185.04459 * 19 17 16 42 42 H 1.09003 * 109.46627 * 305.04303 * 19 17 16 43 43 H 1.08999 * 109.46611 * 65.03931 * 19 17 16 44 44 H 0.96999 * 120.00638 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 8 4.0458 0.8733 1.2220 7 6 4.0724 2.8579 -0.1231 8 8 4.6927 3.3632 0.7885 9 7 3.8324 3.5623 -1.2468 10 6 4.1961 4.9138 -1.3177 11 6 4.3116 5.6645 -0.1578 12 6 4.6765 6.9961 -0.2295 13 6 4.9154 7.5870 -1.4568 14 6 4.7971 6.8483 -2.6188 15 6 4.4372 5.5094 -2.5560 16 16 4.2849 4.5650 -4.0357 17 6 4.8336 5.7245 -5.3183 18 1 5.7870 6.1648 -5.0262 19 6 5.0012 4.9777 -6.6431 20 6 3.8063 6.8148 -5.4826 21 1 2.9125 6.8103 -4.8764 22 6 4.0069 7.8173 -6.4075 23 7 5.0951 7.8225 -7.1460 24 14 2.7332 9.1684 -6.6117 25 1 2.5704 9.8935 -5.3261 26 1 3.1825 10.1177 -7.6616 27 1 1.4344 8.5681 -7.0093 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7601 1.3478 2.0146 36 1 3.4079 3.1337 -2.0065 37 1 4.1208 5.2078 0.8022 38 1 4.7707 7.5779 0.6755 39 1 5.1955 8.6288 -1.5073 40 1 4.9840 7.3131 -3.5756 41 1 5.4159 5.6534 -7.3911 42 1 5.6764 4.1338 -6.5016 43 1 4.0306 4.6139 -6.9803 44 1 5.2365 8.5280 -7.7965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932393492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:28 Heat of formation + Delta-G solvation = -80.643954 kcal Electronic energy + Delta-G solvation = -24950.750409 eV Core-core repulsion = 21379.485951 eV Total energy + Delta-G solvation = -3571.264458 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.64758 -38.47795 -36.97275 -34.96359 -34.32655 -34.08055 -30.70408 -30.41090 -30.20440 -28.55520 -25.47386 -25.02204 -22.77589 -22.37571 -21.61758 -21.18618 -20.24511 -18.19839 -17.29211 -16.81363 -16.51428 -16.14987 -16.04178 -15.22889 -15.07286 -14.71564 -14.34393 -14.14794 -13.86548 -13.67462 -13.46809 -13.32734 -13.06712 -12.55431 -12.35238 -12.24048 -11.91740 -11.84843 -11.64650 -11.51033 -11.30704 -11.03124 -10.98063 -10.96689 -10.81286 -10.61886 -10.48835 -10.35641 -10.07234 -9.53604 -9.42368 -9.12122 -8.96314 -8.58609 -7.88539 -6.61498 -6.20646 -4.35972 1.56748 1.85698 2.47104 2.58238 3.04349 3.19762 3.24674 3.27237 3.55332 3.98674 4.23525 4.26335 4.39178 4.52992 4.61806 4.83772 4.99541 5.04257 5.19545 5.39009 5.41354 5.50292 5.50706 5.53680 5.70333 5.78508 5.87080 5.90425 5.99535 6.02524 6.36745 6.50800 6.59427 6.64582 6.69883 6.75021 6.89710 7.04616 7.22439 7.23701 7.44190 7.49189 7.51507 7.71420 7.92639 8.05460 8.65031 9.29000 10.78161 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.003461 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.834774 B = 8087.637550 C = 8832.398024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.149 4.149 4 C 0.095 3.905 5 H 0.127 0.873 6 O -0.535 6.535 7 C 0.482 3.518 8 O -0.519 6.519 9 N -0.654 5.654 10 C 0.143 3.857 11 C -0.124 4.124 12 C -0.122 4.122 13 C -0.124 4.124 14 C -0.098 4.098 15 C -0.080 4.080 16 S -0.199 6.199 17 C 0.100 3.900 18 H 0.052 0.948 19 C -0.125 4.125 20 C -0.523 4.523 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.885 5.885 24 Si 0.898 3.102 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.382 0.618 36 H 0.413 0.587 37 H 0.139 0.861 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.159 0.841 41 H 0.099 0.901 42 H 0.020 0.980 43 H 0.039 0.961 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.520 -10.120 11.984 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.187 4.187 4 C 0.032 3.968 5 H 0.145 0.855 6 O -0.340 6.340 7 C 0.269 3.731 8 O -0.395 6.395 9 N -0.299 5.299 10 C 0.043 3.957 11 C -0.146 4.146 12 C -0.143 4.143 13 C -0.145 4.145 14 C -0.122 4.122 15 C -0.195 4.195 16 S 0.047 5.953 17 C -0.027 4.027 18 H 0.070 0.930 19 C -0.185 4.185 20 C -0.562 4.562 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.522 5.522 24 Si 0.725 3.275 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.200 1.200 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.231 0.769 36 H 0.250 0.750 37 H 0.156 0.844 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.177 0.823 41 H 0.117 0.883 42 H 0.040 0.960 43 H 0.058 0.942 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.095 -11.359 11.825 17.170 hybrid contribution -0.720 2.397 -0.161 2.508 sum -5.815 -8.962 11.663 15.817 Atomic orbital electron populations 1.21787 0.95609 1.01778 1.01982 1.21460 0.95851 0.95407 1.02952 1.22313 0.93430 0.99013 1.03973 1.21877 0.94158 0.90472 0.90252 0.85542 1.86591 1.77410 1.54930 1.15043 1.21758 0.79756 0.89144 0.82460 1.90677 1.38770 1.70610 1.39399 1.43562 1.59553 1.09533 1.17291 1.17279 1.02615 0.82946 0.92903 1.21081 1.02324 0.93739 0.97431 1.20941 1.01389 0.94477 0.97515 1.21092 1.01374 0.99759 0.92244 1.21757 0.97666 0.92091 1.00691 1.21438 1.05144 0.97969 0.94986 1.84425 1.84632 1.26129 1.00073 1.21099 0.99060 0.92722 0.89855 0.93007 1.21652 0.99622 0.98384 0.98828 1.21220 1.05642 1.07585 1.21771 0.91398 1.24966 0.95584 0.97809 0.94976 1.69851 1.25693 1.33635 1.23042 0.86537 0.81596 0.81273 0.78106 1.19890 1.21092 1.19966 0.92782 0.92523 0.92580 0.91562 0.91105 0.90829 0.90121 0.76900 0.75016 0.84382 0.86428 0.86292 0.82334 0.88272 0.96049 0.94157 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -0.86 5.83 -26.73 -0.16 -1.01 16 3 C -0.15 -1.20 4.86 -26.73 -0.13 -1.33 16 4 C 0.10 0.96 3.38 -27.88 -0.09 0.86 16 5 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 6 O -0.54 -5.71 12.53 -55.09 -0.69 -6.40 16 7 C 0.48 6.63 6.97 -10.99 -0.08 6.55 16 8 O -0.52 -8.68 13.50 -14.31 -0.19 -8.88 16 9 N -0.65 -9.62 5.06 -9.71 -0.05 -9.67 16 10 C 0.14 2.55 6.44 -83.43 -0.54 2.01 16 11 C -0.12 -2.13 8.72 -39.43 -0.34 -2.48 16 12 C -0.12 -1.97 10.04 -39.56 -0.40 -2.37 16 13 C -0.12 -2.17 10.04 -39.57 -0.40 -2.56 16 14 C -0.10 -1.98 8.85 -39.39 -0.35 -2.33 16 15 C -0.08 -1.59 6.11 -38.90 -0.24 -1.82 16 16 S -0.20 -4.00 19.94 -107.50 -2.14 -6.14 16 17 C 0.10 2.33 2.02 -27.88 -0.06 2.27 16 18 H 0.05 1.30 7.38 -51.92 -0.38 0.92 16 19 C -0.13 -2.80 8.90 37.16 0.33 -2.47 16 20 C -0.52 -13.07 6.42 -34.44 -0.22 -13.29 16 21 H 0.07 1.74 7.71 -52.49 -0.40 1.34 16 22 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 23 N -0.89 -23.14 11.37 55.43 0.63 -22.51 16 24 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.52 7.82 -51.93 -0.41 0.12 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.65 7.95 -51.93 -0.41 0.23 16 35 H 0.38 3.19 8.79 45.56 0.40 3.59 16 36 H 0.41 5.46 7.54 -40.82 -0.31 5.15 16 37 H 0.14 2.31 5.79 -52.48 -0.30 2.00 16 38 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.16 3.56 4.80 -52.48 -0.25 3.31 16 41 H 0.10 2.41 6.22 -51.93 -0.32 2.08 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 370.61 15.07 5.58 5.58 Total: -1.00 -28.42 370.61 -10.03 -38.45 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.76 Total: 11.51 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -2.39 Total: -16.93 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.58 Total: -32.18 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.88 Total: -15.27 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: -4.00 SS G_CDS: -2.14 Total: -6.14 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.42 -10.03 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932393492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.197 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds