Wall clock time and date at job start Tue Mar 31 2020 14:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 C 1.53000 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47223 * 54.99935 * 4 3 2 6 6 O 1.42899 * 109.47051 * 295.00016 * 4 3 2 7 7 C 1.50699 * 109.47240 * 175.00170 * 4 3 2 8 8 O 1.21294 * 120.00152 * 115.00116 * 7 4 3 9 9 N 1.34774 * 119.99940 * 295.00339 * 7 4 3 10 10 C 1.40140 * 120.00023 * 174.42955 * 9 7 4 11 11 C 1.38647 * 120.09967 * 335.18803 * 10 9 7 12 12 C 1.38248 * 120.00968 * 179.70564 * 11 10 9 13 13 C 1.38299 * 120.20801 * 0.59443 * 12 11 10 14 14 C 1.38194 * 120.19939 * 359.68488 * 13 12 11 15 15 C 1.38789 * 119.98965 * 0.02562 * 14 13 12 16 16 S 1.76200 * 120.10208 * 179.97438 * 15 14 13 17 17 C 1.81394 * 103.00264 * 4.85523 * 16 15 14 18 18 H 1.09004 * 109.47308 * 49.86855 * 17 16 15 19 19 C 1.53002 * 109.47416 * 169.87263 * 17 16 15 20 20 C 1.50704 * 109.47111 * 289.87357 * 17 16 15 21 21 H 1.07999 * 119.99590 * 359.97438 * 20 17 16 22 22 C 1.37869 * 120.00097 * 180.02562 * 20 17 16 23 23 N 1.31512 * 120.00227 * 359.97438 * 22 20 17 24 24 Si 1.86802 * 120.00179 * 179.97438 * 22 20 17 25 25 H 1.48499 * 109.46950 * 59.99486 * 24 22 20 26 26 H 1.48499 * 109.47160 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46723 * 300.00000 * 24 22 20 28 28 H 1.08993 * 109.47261 * 299.99935 * 1 2 3 29 29 H 1.09004 * 109.46953 * 60.00185 * 1 2 3 30 30 H 1.09001 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47114 * 240.00168 * 2 1 3 32 32 H 1.08997 * 109.47199 * 120.00434 * 2 1 3 33 33 H 1.08998 * 109.46958 * 60.00388 * 3 2 1 34 34 H 1.08995 * 109.47282 * 299.99760 * 3 2 1 35 35 H 0.96697 * 114.00266 * 300.00175 * 6 4 3 36 36 H 0.97000 * 119.99654 * 354.42409 * 9 7 4 37 37 H 1.08006 * 119.99293 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.89863 * 180.30193 * 12 11 10 39 39 H 1.07996 * 119.89764 * 179.70448 * 13 12 11 40 40 H 1.08004 * 120.00369 * 179.97438 * 14 13 12 41 41 H 1.08995 * 109.47163 * 185.04459 * 19 17 16 42 42 H 1.09003 * 109.46627 * 305.04303 * 19 17 16 43 43 H 1.08999 * 109.46611 * 65.03931 * 19 17 16 44 44 H 0.96999 * 120.00638 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 8 4.0458 0.8733 1.2220 7 6 4.0724 2.8579 -0.1231 8 8 4.6927 3.3632 0.7885 9 7 3.8324 3.5623 -1.2468 10 6 4.1961 4.9138 -1.3177 11 6 4.3116 5.6645 -0.1578 12 6 4.6765 6.9961 -0.2295 13 6 4.9154 7.5870 -1.4568 14 6 4.7971 6.8483 -2.6188 15 6 4.4372 5.5094 -2.5560 16 16 4.2849 4.5650 -4.0357 17 6 4.8336 5.7245 -5.3183 18 1 5.7870 6.1648 -5.0262 19 6 5.0012 4.9777 -6.6431 20 6 3.8063 6.8148 -5.4826 21 1 2.9125 6.8103 -4.8764 22 6 4.0069 7.8173 -6.4075 23 7 5.0951 7.8225 -7.1460 24 14 2.7332 9.1684 -6.6117 25 1 2.5704 9.8935 -5.3261 26 1 3.1825 10.1177 -7.6616 27 1 1.4344 8.5681 -7.0093 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7601 1.3478 2.0146 36 1 3.4079 3.1337 -2.0065 37 1 4.1208 5.2078 0.8022 38 1 4.7707 7.5779 0.6755 39 1 5.1955 8.6288 -1.5073 40 1 4.9840 7.3131 -3.5756 41 1 5.4159 5.6534 -7.3911 42 1 5.6764 4.1338 -6.5016 43 1 4.0306 4.6139 -6.9803 44 1 5.2365 8.5280 -7.7965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932393492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:27 Heat of formation + Delta-G solvation = -95.953754 kcal Electronic energy + Delta-G solvation = -24951.414292 eV Core-core repulsion = 21379.485951 eV Total energy + Delta-G solvation = -3571.928341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80591 -39.70291 -37.94257 -36.30377 -35.88351 -34.97648 -32.45982 -31.82488 -31.40637 -29.57894 -27.37955 -25.87758 -24.15557 -23.85247 -22.77407 -22.22178 -21.43212 -19.35383 -18.50576 -18.50035 -17.99671 -17.22350 -17.02041 -16.88204 -16.10545 -15.96346 -15.76822 -15.26372 -15.05075 -14.94475 -14.86628 -14.67847 -14.26272 -13.93450 -13.51745 -13.42157 -13.19284 -12.91370 -12.85187 -12.82480 -12.64150 -12.51436 -12.39832 -12.29436 -12.03558 -11.84886 -11.68926 -11.53715 -11.46207 -11.33933 -10.91404 -10.59472 -10.49801 -10.43321 -9.26292 -8.31526 -7.99669 -6.34727 0.21599 0.42391 0.90891 1.41615 1.42475 1.43310 1.49489 1.78485 1.95454 2.39413 2.84075 3.08864 3.18592 3.50507 3.77489 3.94107 4.00859 4.18039 4.23292 4.35309 4.42869 4.53976 4.58100 4.62148 4.64621 4.78758 4.82815 4.88297 4.90305 4.98505 5.00165 5.23791 5.26150 5.32353 5.34010 5.35825 5.48814 5.50136 5.60073 5.63962 5.77109 6.02718 6.06027 6.24731 6.58109 6.67382 6.92414 7.31902 8.83804 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.003461 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.834774 B = 8087.637550 C = 8832.398024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.142 4.142 4 C 0.106 3.894 5 H 0.140 0.860 6 O -0.544 6.544 7 C 0.483 3.517 8 O -0.548 6.548 9 N -0.651 5.651 10 C 0.143 3.857 11 C -0.130 4.130 12 C -0.108 4.108 13 C -0.129 4.129 14 C -0.119 4.119 15 C -0.108 4.108 16 S -0.172 6.172 17 C 0.093 3.907 18 H 0.024 0.976 19 C -0.116 4.116 20 C -0.525 4.525 21 H 0.057 0.943 22 C 0.031 3.969 23 N -0.909 5.909 24 Si 0.951 3.049 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.392 0.608 36 H 0.419 0.581 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.078 0.922 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.635 -10.799 13.557 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.180 4.180 4 C 0.043 3.957 5 H 0.158 0.842 6 O -0.350 6.350 7 C 0.272 3.728 8 O -0.426 6.426 9 N -0.297 5.297 10 C 0.042 3.958 11 C -0.152 4.152 12 C -0.129 4.129 13 C -0.149 4.149 14 C -0.143 4.143 15 C -0.223 4.223 16 S 0.074 5.926 17 C -0.035 4.035 18 H 0.042 0.958 19 C -0.175 4.175 20 C -0.564 4.564 21 H 0.076 0.924 22 C -0.171 4.171 23 N -0.547 5.547 24 Si 0.777 3.223 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.242 0.758 36 H 0.257 0.743 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.157 0.843 40 H 0.147 0.853 41 H 0.096 0.904 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.225 -12.057 13.412 19.079 hybrid contribution -0.345 2.580 -0.502 2.651 sum -6.571 -9.477 12.910 17.310 Atomic orbital electron populations 1.21786 0.95212 1.02206 1.01957 1.21435 0.96129 0.94635 1.03135 1.22277 0.91675 0.99802 1.04274 1.21939 0.95320 0.87810 0.90594 0.84216 1.86577 1.77777 1.55072 1.15622 1.22516 0.78706 0.90229 0.81358 1.90654 1.40077 1.71593 1.40254 1.43623 1.59484 1.08548 1.18078 1.17423 1.01676 0.84348 0.92316 1.21325 1.02232 0.94234 0.97408 1.21326 0.99057 0.94309 0.98239 1.21310 1.01130 1.00625 0.91840 1.21605 0.99353 0.92786 1.00532 1.21529 1.07169 0.98182 0.95411 1.84032 1.84866 1.24508 0.99242 1.20894 0.97519 0.93504 0.91577 0.95816 1.21499 0.99804 0.98336 0.97891 1.21288 1.05407 1.08321 1.21340 0.92443 1.25597 0.97064 0.99583 0.94873 1.69954 1.26968 1.34238 1.23552 0.85700 0.79603 0.79062 0.77969 1.19703 1.20773 1.19708 0.92649 0.92720 0.91976 0.91173 0.91161 0.90501 0.89907 0.75798 0.74253 0.83610 0.82871 0.84324 0.85290 0.90385 0.94223 0.94181 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 71.98 0.71 -1.05 16 2 C -0.12 -1.40 5.83 30.59 0.18 -1.23 16 3 C -0.14 -1.97 4.86 30.59 0.15 -1.82 16 4 C 0.11 1.91 3.38 29.85 0.10 2.01 16 5 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 6 O -0.54 -10.50 12.53 -129.99 -1.63 -12.13 16 7 C 0.48 12.49 6.97 87.66 0.61 13.10 16 8 O -0.55 -17.52 13.50 15.92 0.21 -17.30 16 9 N -0.65 -18.31 5.06 -303.02 -1.53 -19.84 16 10 C 0.14 4.98 6.44 38.22 0.25 5.22 16 11 C -0.13 -4.25 8.72 22.37 0.20 -4.05 16 12 C -0.11 -3.25 10.04 22.29 0.22 -3.03 16 13 C -0.13 -4.36 10.04 22.27 0.22 -4.14 16 14 C -0.12 -4.86 8.85 22.39 0.20 -4.66 16 15 C -0.11 -4.27 6.11 22.71 0.14 -4.13 16 16 S -0.17 -6.93 19.94 -56.49 -1.13 -8.06 16 17 C 0.09 4.44 2.02 29.85 0.06 4.50 16 18 H 0.02 1.26 7.38 -2.39 -0.02 1.24 16 19 C -0.12 -5.26 8.90 71.98 0.64 -4.62 16 20 C -0.52 -26.77 6.42 25.60 0.16 -26.61 16 21 H 0.06 3.00 7.71 -2.91 -0.02 2.98 16 22 C 0.03 1.59 5.30 84.65 0.45 2.03 16 23 N -0.91 -48.61 11.37 21.44 0.24 -48.37 16 24 Si 0.95 41.27 29.54 68.60 2.03 43.29 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.07 0.88 7.82 -2.39 -0.02 0.86 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.14 7.95 -2.39 -0.02 1.12 16 35 H 0.39 5.80 8.79 -74.06 -0.65 5.15 16 36 H 0.42 10.51 7.54 -92.71 -0.70 9.81 16 37 H 0.15 4.57 5.79 -2.91 -0.02 4.55 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.13 6.05 4.80 -2.91 -0.01 6.04 16 41 H 0.08 3.88 6.22 -2.39 -0.01 3.87 16 42 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -61.08 370.61 2.16 -58.91 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: -0.33 Total: 31.96 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 4.29 Total: -28.47 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: -1.29 Total: -68.21 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -1.41 Total: -29.43 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: -6.93 SS G_CDS: -1.13 Total: -8.06 kcal Total: -61.08 2.16 -58.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932393492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.040 kcal (2) G-P(sol) polarization free energy of solvation -61.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds