Wall clock time and date at job start Tue Mar 31 2020 13:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46505 * 109.47223 * 2 1 4 4 C 1.34774 * 119.99748 * 296.70980 * 3 2 1 5 5 O 1.21587 * 120.00242 * 5.03380 * 4 3 2 6 6 N 1.34778 * 120.00380 * 185.03938 * 4 3 2 7 7 C 1.46495 * 120.00598 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.47533 * 179.97438 * 7 6 4 9 9 O 1.21297 * 119.99410 * 359.97438 * 8 7 6 10 10 N 1.34767 * 120.00259 * 180.02562 * 8 7 6 11 11 C 1.37103 * 120.00031 * 179.97438 * 10 8 7 12 12 H 1.07997 * 119.99956 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99807 * 179.97438 * 11 10 8 14 14 N 1.31412 * 120.00469 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99825 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47124 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47091 * 120.00194 * 15 13 11 18 18 H 1.48504 * 109.47157 * 240.00421 * 15 13 11 19 19 C 1.53002 * 109.47328 * 239.99804 * 2 1 3 20 20 C 1.52995 * 117.49889 * 305.00339 * 19 2 1 21 21 C 1.52995 * 117.50161 * 236.37666 * 19 2 1 22 22 C 1.53005 * 109.47305 * 119.99758 * 2 1 3 23 23 F 1.39897 * 109.47089 * 182.12837 * 22 2 1 24 24 F 1.39901 * 109.46937 * 302.12379 * 22 2 1 25 25 F 1.39898 * 109.46791 * 62.12610 * 22 2 1 26 26 H 1.09001 * 109.47105 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47485 * 300.00438 * 1 2 3 28 28 H 1.09002 * 109.47629 * 60.00039 * 1 2 3 29 29 H 0.96996 * 120.00414 * 116.70937 * 3 2 1 30 30 H 0.97000 * 119.99259 * 359.97438 * 6 4 3 31 31 H 1.08998 * 109.46864 * 299.99705 * 7 6 4 32 32 H 1.08999 * 109.47108 * 59.99295 * 7 6 4 33 33 H 0.96997 * 120.00514 * 359.97438 * 10 8 7 34 34 H 0.96996 * 119.99875 * 179.97438 * 14 13 11 35 35 H 1.09003 * 115.55716 * 90.68715 * 19 2 1 36 36 H 1.08994 * 117.50266 * 145.01744 * 20 19 2 37 37 H 1.09006 * 117.49822 * 359.97438 * 20 19 2 38 38 H 1.09006 * 117.49693 * 0.02562 * 21 19 2 39 39 H 1.08991 * 117.52302 * 214.96998 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7483 2.1914 -1.0427 5 8 1.0236 1.8065 -1.9399 6 7 2.2816 3.4283 -1.0909 7 6 1.9886 4.3087 -2.2245 8 6 2.7009 5.6234 -2.0368 9 8 3.3856 5.8070 -1.0525 10 7 2.5763 6.5954 -2.9619 11 6 3.2240 7.7917 -2.7908 12 1 3.8336 7.9552 -1.9145 13 6 3.0959 8.7937 -3.7450 14 7 2.3537 8.5950 -4.8111 15 14 3.9778 10.4238 -3.5115 16 1 4.7425 10.3951 -2.2388 17 1 4.9112 10.6483 -4.6444 18 1 2.9810 11.5237 -3.4659 19 6 2.0400 -0.7213 -1.2492 20 6 1.5415 -2.1468 -1.4949 21 6 2.9840 -1.9077 -1.0441 22 6 2.0400 -0.7212 1.2493 23 9 3.4381 -0.6789 1.2740 24 9 1.5342 -0.0905 2.3910 25 9 1.6140 -2.0535 1.2251 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 2.5359 1.7127 0.7503 30 1 2.8595 3.7354 -0.3749 31 1 2.3295 3.8389 -3.1470 32 1 0.9141 4.4828 -2.2810 33 1 2.0285 6.4488 -3.7488 34 1 2.2641 9.2946 -5.4769 35 1 2.2079 -0.0895 -2.1214 36 1 1.3815 -2.4529 -2.5287 37 1 0.8505 -2.5709 -0.7663 38 1 3.2413 -2.1747 -0.0190 39 1 3.7729 -2.0569 -1.7811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933569822.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:38 Heat of formation + Delta-G solvation = -179.888540 kcal Electronic energy + Delta-G solvation = -28169.067076 eV Core-core repulsion = 23505.349095 eV Total energy + Delta-G solvation = -4663.717981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.66785 -48.07864 -47.99932 -40.47032 -38.58488 -37.75645 -34.86177 -34.45744 -33.74019 -31.44463 -30.90305 -27.50833 -26.82542 -24.57486 -23.73970 -22.59056 -21.70833 -20.22073 -19.63517 -19.01620 -18.79466 -18.64127 -18.15831 -17.44438 -16.21267 -15.70275 -15.62112 -15.31882 -14.97653 -14.84004 -14.73976 -14.58583 -14.41349 -14.29399 -14.17483 -14.10202 -13.98774 -13.72080 -13.49834 -12.88309 -12.67643 -12.37260 -12.23533 -12.01024 -11.65648 -11.55225 -11.45884 -11.16438 -10.71070 -10.42945 -10.42639 -10.34745 -10.00757 -9.67179 -9.44954 -8.78788 -8.66436 -8.12736 -6.53995 -3.96033 2.06655 2.48444 3.08292 3.14804 3.21203 3.23898 3.27758 3.52625 3.66195 3.71809 3.78554 4.00623 4.13723 4.37150 4.54928 4.69334 4.84299 4.90486 5.04880 5.14732 5.30537 5.43093 5.48121 5.66037 5.81461 5.84418 5.89917 5.93763 6.01400 6.03133 6.18589 6.63782 6.80822 7.44038 7.89841 8.02954 8.41968 8.59303 9.02320 9.36535 9.84156 10.62897 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.029430 B = 0.002496 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.189343 B =11217.059794 C =11554.867048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.196 3.804 3 N -0.740 5.740 4 C 0.715 3.285 5 O -0.585 6.585 6 N -0.719 5.719 7 C 0.129 3.871 8 C 0.427 3.573 9 O -0.597 6.597 10 N -0.548 5.548 11 C -0.305 4.305 12 H 0.106 0.894 13 C 0.026 3.974 14 N -0.894 5.894 15 Si 0.932 3.068 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.160 4.160 20 C -0.166 4.166 21 C -0.195 4.195 22 C 0.450 3.550 23 F -0.172 7.172 24 F -0.176 7.176 25 F -0.169 7.169 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.402 0.598 30 H 0.408 0.592 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.396 0.604 34 H 0.274 0.726 35 H 0.137 0.863 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.882 -20.453 8.489 22.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.106 3.894 3 N -0.398 5.398 4 C 0.415 3.585 5 O -0.463 6.463 6 N -0.376 5.376 7 C 0.001 3.999 8 C 0.213 3.787 9 O -0.484 6.484 10 N -0.183 5.183 11 C -0.434 4.434 12 H 0.124 0.876 13 C -0.177 4.177 14 N -0.534 5.534 15 Si 0.759 3.241 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.180 4.180 20 C -0.204 4.204 21 C -0.231 4.231 22 C 0.396 3.604 23 F -0.153 7.153 24 F -0.157 7.157 25 F -0.151 7.151 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.237 0.763 30 H 0.246 0.754 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.101 -20.504 8.151 22.281 hybrid contribution 0.750 0.971 0.453 1.308 sum -2.351 -19.533 8.604 21.473 Atomic orbital electron populations 1.22355 0.90512 1.03939 1.05858 1.20583 0.96979 0.82016 0.89790 1.44809 1.61172 1.10391 1.23429 1.15582 0.80501 0.80480 0.81893 1.90891 1.41366 1.75240 1.38804 1.44776 1.53018 1.13164 1.26646 1.20818 1.00646 0.89693 0.88775 1.19740 0.87125 0.85888 0.85960 1.90502 1.45096 1.81545 1.31261 1.41787 1.43321 1.12678 1.20524 1.19779 1.26423 0.89584 1.07630 0.87618 1.25327 0.97178 1.00118 0.95080 1.69619 1.38488 1.35144 1.10171 0.85761 0.78940 0.80811 0.78598 1.19122 1.20605 1.20598 1.22601 1.04994 0.91333 0.99022 1.23118 0.97187 0.96881 1.03173 1.23539 0.94097 1.01639 1.03847 1.20599 0.75918 0.78172 0.85745 1.93192 1.29395 1.96000 1.96696 1.93212 1.87018 1.81854 1.53626 1.93157 1.89703 1.35679 1.96529 0.90653 0.91239 0.87458 0.76270 0.75409 0.89843 0.89824 0.77015 0.91616 0.84476 0.88054 0.87986 0.87979 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 7.99 37.15 0.30 -1.41 16 2 C 0.20 2.08 0.46 -131.82 -0.06 2.02 16 3 N -0.74 -8.62 4.96 -52.41 -0.26 -8.88 16 4 C 0.72 10.50 7.79 -86.92 -0.68 9.83 16 5 O -0.58 -9.78 12.91 5.29 0.07 -9.71 16 6 N -0.72 -11.31 5.53 -66.42 -0.37 -11.67 16 7 C 0.13 2.26 6.15 -5.20 -0.03 2.23 16 8 C 0.43 9.51 7.85 -10.99 -0.09 9.42 16 9 O -0.60 -14.93 15.24 5.54 0.08 -14.84 16 10 N -0.55 -13.29 5.29 -10.96 -0.06 -13.34 16 11 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 12 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 13 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 14 N -0.89 -23.55 13.05 55.50 0.72 -22.83 16 15 Si 0.93 20.29 29.55 -169.99 -5.02 15.27 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 19 C -0.16 -1.73 4.84 -90.62 -0.44 -2.17 16 20 C -0.17 -1.46 9.17 -26.73 -0.25 -1.71 16 21 C -0.19 -1.81 8.95 -26.73 -0.24 -2.05 16 22 C 0.45 4.44 1.83 37.16 0.07 4.51 16 23 F -0.17 -1.76 14.81 2.25 0.03 -1.73 16 24 F -0.18 -1.77 16.62 2.25 0.04 -1.73 16 25 F -0.17 -1.57 12.97 2.25 0.03 -1.54 16 26 H 0.07 0.63 6.71 -51.93 -0.35 0.28 16 27 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 28 H 0.11 1.31 6.24 -51.93 -0.32 0.99 16 29 H 0.40 4.07 8.38 -40.82 -0.34 3.72 16 30 H 0.41 6.36 7.46 -40.82 -0.30 6.06 16 31 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.40 9.21 7.90 -40.82 -0.32 8.89 16 34 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.14 1.80 6.47 -51.93 -0.34 1.46 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.82 5.94 -51.93 -0.31 0.51 16 38 H 0.10 0.95 4.52 -51.93 -0.23 0.72 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -29.45 331.88 -5.51 -34.96 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -4.12 Total: 18.11 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: -1.66 Total: 12.93 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.04 Total: -56.72 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: 0.15 Total: -24.56 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.10 Total: -5.00 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.45 -5.51 -34.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933569822.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.925 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds