Wall clock time and date at job start Tue Mar 31 2020 13:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46505 * 109.47223 * 2 1 4 4 C 1.34774 * 119.99748 * 296.70980 * 3 2 1 5 5 O 1.21587 * 120.00242 * 5.03380 * 4 3 2 6 6 N 1.34778 * 120.00380 * 185.03938 * 4 3 2 7 7 C 1.46495 * 120.00598 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.47533 * 179.97438 * 7 6 4 9 9 O 1.21297 * 119.99410 * 359.97438 * 8 7 6 10 10 N 1.34767 * 120.00259 * 180.02562 * 8 7 6 11 11 C 1.37103 * 120.00031 * 179.97438 * 10 8 7 12 12 H 1.07997 * 119.99956 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99807 * 179.97438 * 11 10 8 14 14 N 1.31412 * 120.00469 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99825 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47124 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47091 * 120.00194 * 15 13 11 18 18 H 1.48504 * 109.47157 * 240.00421 * 15 13 11 19 19 C 1.53002 * 109.47328 * 239.99804 * 2 1 3 20 20 C 1.52995 * 117.49889 * 305.00339 * 19 2 1 21 21 C 1.52995 * 117.50161 * 236.37666 * 19 2 1 22 22 C 1.53005 * 109.47305 * 119.99758 * 2 1 3 23 23 F 1.39897 * 109.47089 * 182.12837 * 22 2 1 24 24 F 1.39901 * 109.46937 * 302.12379 * 22 2 1 25 25 F 1.39898 * 109.46791 * 62.12610 * 22 2 1 26 26 H 1.09001 * 109.47105 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47485 * 300.00438 * 1 2 3 28 28 H 1.09002 * 109.47629 * 60.00039 * 1 2 3 29 29 H 0.96996 * 120.00414 * 116.70937 * 3 2 1 30 30 H 0.97000 * 119.99259 * 359.97438 * 6 4 3 31 31 H 1.08998 * 109.46864 * 299.99705 * 7 6 4 32 32 H 1.08999 * 109.47108 * 59.99295 * 7 6 4 33 33 H 0.96997 * 120.00514 * 359.97438 * 10 8 7 34 34 H 0.96996 * 119.99875 * 179.97438 * 14 13 11 35 35 H 1.09003 * 115.55716 * 90.68715 * 19 2 1 36 36 H 1.08994 * 117.50266 * 145.01744 * 20 19 2 37 37 H 1.09006 * 117.49822 * 359.97438 * 20 19 2 38 38 H 1.09006 * 117.49693 * 0.02562 * 21 19 2 39 39 H 1.08991 * 117.52302 * 214.96998 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7483 2.1914 -1.0427 5 8 1.0236 1.8065 -1.9399 6 7 2.2816 3.4283 -1.0909 7 6 1.9886 4.3087 -2.2245 8 6 2.7009 5.6234 -2.0368 9 8 3.3856 5.8070 -1.0525 10 7 2.5763 6.5954 -2.9619 11 6 3.2240 7.7917 -2.7908 12 1 3.8336 7.9552 -1.9145 13 6 3.0959 8.7937 -3.7450 14 7 2.3537 8.5950 -4.8111 15 14 3.9778 10.4238 -3.5115 16 1 4.7425 10.3951 -2.2388 17 1 4.9112 10.6483 -4.6444 18 1 2.9810 11.5237 -3.4659 19 6 2.0400 -0.7213 -1.2492 20 6 1.5415 -2.1468 -1.4949 21 6 2.9840 -1.9077 -1.0441 22 6 2.0400 -0.7212 1.2493 23 9 3.4381 -0.6789 1.2740 24 9 1.5342 -0.0905 2.3910 25 9 1.6140 -2.0535 1.2251 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 2.5359 1.7127 0.7503 30 1 2.8595 3.7354 -0.3749 31 1 2.3295 3.8389 -3.1470 32 1 0.9141 4.4828 -2.2810 33 1 2.0285 6.4488 -3.7488 34 1 2.2641 9.2946 -5.4769 35 1 2.2079 -0.0895 -2.1214 36 1 1.3815 -2.4529 -2.5287 37 1 0.8505 -2.5709 -0.7663 38 1 3.2413 -2.1747 -0.0190 39 1 3.7729 -2.0569 -1.7811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933569822.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:38 Heat of formation + Delta-G solvation = -200.875703 kcal Electronic energy + Delta-G solvation = -28169.977148 eV Core-core repulsion = 23505.349095 eV Total energy + Delta-G solvation = -4664.628053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.46058 -48.86328 -48.79681 -41.59838 -40.21832 -38.85170 -36.25077 -35.75288 -35.28873 -33.37015 -31.92339 -28.99076 -27.69997 -26.36239 -24.61113 -23.30929 -22.77196 -21.38581 -21.18327 -20.11691 -19.85231 -19.65508 -19.59276 -18.60409 -17.39265 -17.02054 -16.91608 -16.63816 -16.36869 -15.92436 -15.75470 -15.74037 -15.58012 -15.29762 -15.22100 -15.07628 -15.05347 -14.92268 -14.61826 -13.95407 -13.87122 -13.54255 -13.48984 -13.45490 -13.17218 -12.90938 -12.43734 -12.33749 -12.25005 -12.10921 -11.57171 -11.52888 -11.21563 -11.13980 -10.54611 -10.52113 -10.10764 -9.99683 -8.50445 -6.00276 1.10654 1.35692 1.43764 1.54397 1.58470 1.90219 2.01312 2.27927 2.43225 2.70374 2.81646 2.89489 3.06601 3.17158 3.20797 3.50552 3.75910 3.91177 4.11525 4.22477 4.25981 4.44838 4.48535 4.54132 4.67176 4.71920 4.94851 4.99846 5.14174 5.17812 5.24147 5.33563 5.40007 5.71766 5.93507 6.49200 6.86448 7.04949 7.38493 7.47339 7.96164 8.66636 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.029430 B = 0.002496 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.189343 B =11217.059794 C =11554.867048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.192 3.808 3 N -0.730 5.730 4 C 0.719 3.281 5 O -0.604 6.604 6 N -0.722 5.722 7 C 0.144 3.856 8 C 0.433 3.567 9 O -0.625 6.625 10 N -0.559 5.559 11 C -0.336 4.336 12 H 0.085 0.915 13 C -0.010 4.010 14 N -0.916 5.916 15 Si 0.995 3.005 16 H -0.270 1.270 17 H -0.272 1.272 18 H -0.271 1.271 19 C -0.177 4.177 20 C -0.154 4.154 21 C -0.191 4.191 22 C 0.458 3.542 23 F -0.173 7.173 24 F -0.176 7.176 25 F -0.163 7.163 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.410 0.590 30 H 0.409 0.591 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.399 0.601 34 H 0.280 0.720 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.038 -21.380 8.884 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.104 3.896 3 N -0.388 5.388 4 C 0.419 3.581 5 O -0.483 6.483 6 N -0.379 5.379 7 C 0.016 3.984 8 C 0.220 3.780 9 O -0.513 6.513 10 N -0.195 5.195 11 C -0.465 4.465 12 H 0.103 0.897 13 C -0.211 4.211 14 N -0.556 5.556 15 Si 0.819 3.181 16 H -0.195 1.195 17 H -0.197 1.197 18 H -0.197 1.197 19 C -0.196 4.196 20 C -0.191 4.191 21 C -0.227 4.227 22 C 0.403 3.597 23 F -0.155 7.155 24 F -0.157 7.157 25 F -0.144 7.144 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.247 0.753 30 H 0.247 0.753 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.234 0.766 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.263 -21.467 8.561 23.340 hybrid contribution 0.789 1.164 0.361 1.452 sum -2.474 -20.303 8.922 22.315 Atomic orbital electron populations 1.22317 0.90040 1.04991 1.04979 1.20700 0.97367 0.81245 0.90336 1.44702 1.60670 1.10646 1.22741 1.15556 0.80149 0.80178 0.82228 1.90885 1.42184 1.75516 1.39753 1.44704 1.53472 1.13484 1.26235 1.20605 1.00536 0.87395 0.89910 1.20465 0.86043 0.86807 0.84714 1.90480 1.46141 1.82434 1.32241 1.41827 1.43758 1.12695 1.21197 1.19757 1.27701 0.91283 1.07767 0.89654 1.26096 0.97554 1.02888 0.94526 1.69679 1.39041 1.36261 1.10597 0.84836 0.77994 0.76891 0.78416 1.19478 1.19695 1.19672 1.22462 1.06986 0.91917 0.98256 1.23221 0.96949 0.94879 1.04030 1.23579 0.94583 1.00425 1.04139 1.20382 0.75766 0.78306 0.85272 1.93194 1.29558 1.96027 1.96679 1.93218 1.87005 1.81912 1.53557 1.93171 1.89623 1.35129 1.96480 0.88710 0.90823 0.89512 0.75333 0.75295 0.88701 0.88620 0.76647 0.91093 0.86907 0.87233 0.86880 0.87798 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 7.99 71.98 0.57 -2.54 16 2 C 0.19 3.83 0.46 3.60 0.00 3.83 16 3 N -0.73 -16.31 4.96 -438.00 -2.17 -18.48 16 4 C 0.72 20.62 7.79 179.05 1.40 22.02 16 5 O -0.60 -19.88 12.91 -3.99 -0.05 -19.93 16 6 N -0.72 -22.28 5.53 -482.31 -2.67 -24.95 16 7 C 0.14 4.97 6.15 85.63 0.53 5.49 16 8 C 0.43 19.36 7.85 87.66 0.69 20.05 16 9 O -0.62 -31.57 15.24 -3.08 -0.05 -31.61 16 10 N -0.56 -27.44 5.29 -306.99 -1.62 -29.06 16 11 C -0.34 -18.24 9.68 84.04 0.81 -17.43 16 12 H 0.09 4.91 7.16 -2.91 -0.02 4.88 16 13 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 14 N -0.92 -48.03 13.05 21.66 0.28 -47.74 16 15 Si 1.00 41.36 29.55 68.60 2.03 43.39 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 17 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 19 C -0.18 -3.61 4.84 -10.80 -0.05 -3.66 16 20 C -0.15 -2.40 9.17 30.59 0.28 -2.12 16 21 C -0.19 -3.24 8.95 30.59 0.27 -2.96 16 22 C 0.46 8.18 1.83 71.98 0.13 8.31 16 23 F -0.17 -3.27 14.81 44.97 0.67 -2.60 16 24 F -0.18 -3.21 16.62 44.97 0.75 -2.46 16 25 F -0.16 -2.64 12.97 44.97 0.58 -2.05 16 26 H 0.09 1.38 6.71 -2.39 -0.02 1.36 16 27 H 0.07 1.31 7.75 -2.39 -0.02 1.29 16 28 H 0.09 2.06 6.24 -2.39 -0.01 2.04 16 29 H 0.41 7.86 8.38 -92.71 -0.78 7.08 16 30 H 0.41 12.61 7.46 -92.71 -0.69 11.91 16 31 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.40 18.78 7.90 -92.71 -0.73 18.05 16 34 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 35 H 0.11 2.93 6.47 -2.39 -0.02 2.91 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.11 1.51 5.94 -2.38 -0.01 1.50 16 38 H 0.10 1.74 4.52 -2.38 -0.01 1.73 16 39 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -62.22 331.88 1.81 -60.41 By element: Atomic # 1 Polarization: 45.20 SS G_CDS: -1.04 Total: 44.17 kcal Atomic # 6 Polarization: 25.84 SS G_CDS: 5.10 Total: 30.94 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -6.18 Total: -120.24 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -0.10 Total: -51.55 kcal Atomic # 9 Polarization: -9.11 SS G_CDS: 2.00 Total: -7.12 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -62.22 1.81 -60.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933569822.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.462 kcal (2) G-P(sol) polarization free energy of solvation -62.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds