Wall clock time and date at job start Tue Mar 31 2020 13:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47200 * 2 1 4 4 C 1.34776 * 119.99996 * 56.68511 * 3 2 1 5 5 O 1.21588 * 119.99916 * 5.08991 * 4 3 2 6 6 N 1.34779 * 119.99942 * 185.07958 * 4 3 2 7 7 C 1.46499 * 119.99993 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47078 * 180.02562 * 7 6 4 9 9 O 1.21294 * 119.99792 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99823 * 179.97438 * 8 7 6 11 11 C 1.37095 * 119.99976 * 179.97438 * 10 8 7 12 12 H 1.08006 * 119.99719 * 0.02562 * 11 10 8 13 13 C 1.38946 * 120.00320 * 180.02562 * 11 10 8 14 14 N 1.31415 * 119.99793 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47392 * 89.99417 * 15 13 11 17 17 H 1.48500 * 109.47085 * 209.99966 * 15 13 11 18 18 H 1.48506 * 109.46851 * 329.99917 * 15 13 11 19 19 C 1.52999 * 109.46782 * 119.99775 * 2 1 3 20 20 C 1.53002 * 117.50175 * 55.00064 * 19 2 1 21 21 C 1.53006 * 60.00092 * 107.48843 * 20 19 2 22 22 C 1.52997 * 109.47046 * 239.99749 * 2 1 3 23 23 F 1.39901 * 109.47249 * 297.83585 * 22 2 1 24 24 F 1.39898 * 109.47298 * 57.84489 * 22 2 1 25 25 F 1.39906 * 109.47057 * 177.84087 * 22 2 1 26 26 H 1.09000 * 109.47574 * 300.00238 * 1 2 3 27 27 H 1.09008 * 109.47099 * 60.00350 * 1 2 3 28 28 H 1.08996 * 109.47082 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99728 * 236.68860 * 3 2 1 30 30 H 0.96996 * 119.99749 * 0.02562 * 6 4 3 31 31 H 1.09008 * 109.47048 * 300.00826 * 7 6 4 32 32 H 1.08994 * 109.47329 * 60.00341 * 7 6 4 33 33 H 0.96999 * 120.00433 * 0.02562 * 10 8 7 34 34 H 0.97003 * 120.00035 * 180.02562 * 14 13 11 35 35 H 1.08997 * 115.56071 * 269.30941 * 19 2 1 36 36 H 1.09005 * 117.49364 * 0.02562 * 20 19 2 37 37 H 1.09000 * 117.49955 * 214.97785 * 20 19 2 38 38 H 1.08997 * 117.49637 * 107.48718 * 21 20 19 39 39 H 1.09001 * 117.49954 * 252.49130 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.6386 2.2303 0.9754 5 8 0.9665 1.8268 1.9049 6 7 2.0039 3.5264 0.9205 7 6 1.5916 4.4492 1.9810 8 6 2.1253 5.8268 1.6837 9 8 2.7848 6.0190 0.6841 10 7 1.8689 6.8455 2.5282 11 6 2.3549 8.0986 2.2580 12 1 2.9428 8.2696 1.3683 13 6 2.0911 9.1488 3.1288 14 7 1.3761 8.9406 4.2116 15 14 2.7526 10.8564 2.7603 16 1 1.7608 11.6072 1.9493 17 1 2.9977 11.5780 4.0349 18 1 4.0253 10.7416 2.0038 19 6 2.0399 -0.7212 1.2493 20 6 1.5415 -2.1467 1.4950 21 6 2.9839 -1.9077 1.0442 22 6 2.0400 -0.7213 -1.2492 23 9 1.6147 -2.0539 -1.2245 24 9 1.5336 -0.0911 -2.3910 25 9 3.4381 -0.6784 -1.2743 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 2.6150 1.6847 -0.7020 30 1 2.5399 3.8482 0.1789 31 1 0.5032 4.4841 2.0294 32 1 1.9868 4.1045 2.9365 33 1 1.3412 6.6919 3.3274 34 1 1.1916 9.6738 4.8193 35 1 2.2078 -0.0894 2.1214 36 1 0.8506 -2.5709 0.7664 37 1 1.3815 -2.4527 2.5289 38 1 3.7728 -2.0564 1.7815 39 1 3.2417 -2.1748 0.0194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933569823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:41 Heat of formation + Delta-G solvation = -179.832113 kcal Electronic energy + Delta-G solvation = -28151.133508 eV Core-core repulsion = 23487.417974 eV Total energy + Delta-G solvation = -4663.715534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.66768 -48.07240 -48.00408 -40.46515 -38.58546 -37.76627 -34.85634 -34.45584 -33.74112 -31.44294 -30.89576 -27.52186 -26.83157 -24.57957 -23.71980 -22.59443 -21.67152 -20.23357 -19.63296 -19.01410 -18.79780 -18.67503 -18.15693 -17.43962 -16.21359 -15.69435 -15.62316 -15.31915 -14.97462 -14.84557 -14.74047 -14.59675 -14.40135 -14.30526 -14.18497 -14.13785 -13.90321 -13.75923 -13.50897 -12.84168 -12.66938 -12.38553 -12.23303 -12.01790 -11.65273 -11.55685 -11.46013 -11.14546 -10.72726 -10.47686 -10.42291 -10.34011 -10.00614 -9.66000 -9.44910 -8.78716 -8.66399 -8.12642 -6.53820 -3.95912 2.06582 2.48444 3.09663 3.14307 3.20880 3.23657 3.26080 3.53436 3.66494 3.71994 3.78202 4.01130 4.14402 4.36065 4.54467 4.68715 4.84321 4.89727 5.05706 5.14847 5.30279 5.42636 5.48601 5.65640 5.81641 5.84016 5.89989 5.93878 6.01111 6.03071 6.18649 6.63822 6.80946 7.43892 7.89637 8.02982 8.42101 8.59348 9.02293 9.36544 9.84256 10.62998 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.030083 B = 0.002482 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.538114 B =11278.043377 C =11654.918632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.196 3.804 3 N -0.740 5.740 4 C 0.715 3.285 5 O -0.585 6.585 6 N -0.719 5.719 7 C 0.129 3.871 8 C 0.427 3.573 9 O -0.598 6.598 10 N -0.548 5.548 11 C -0.305 4.305 12 H 0.105 0.895 13 C 0.026 3.974 14 N -0.894 5.894 15 Si 0.933 3.067 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.269 1.269 19 C -0.159 4.159 20 C -0.167 4.167 21 C -0.195 4.195 22 C 0.451 3.549 23 F -0.169 7.169 24 F -0.175 7.175 25 F -0.172 7.172 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.402 0.598 30 H 0.408 0.592 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.396 0.604 34 H 0.274 0.726 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.706 -21.197 -7.127 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.106 3.894 3 N -0.398 5.398 4 C 0.415 3.585 5 O -0.463 6.463 6 N -0.376 5.376 7 C 0.001 3.999 8 C 0.213 3.787 9 O -0.484 6.484 10 N -0.183 5.183 11 C -0.435 4.435 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.534 5.534 15 Si 0.760 3.240 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.178 4.178 20 C -0.204 4.204 21 C -0.232 4.232 22 C 0.396 3.604 23 F -0.151 7.151 24 F -0.156 7.156 25 F -0.154 7.154 26 H 0.127 0.873 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.237 0.763 30 H 0.246 0.754 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.945 -21.239 -6.794 22.320 hybrid contribution 0.671 0.994 -0.517 1.306 sum -0.274 -20.246 -7.311 21.527 Atomic orbital electron populations 1.22359 0.90405 1.04078 1.05983 1.20580 0.97078 0.82049 0.89674 1.44808 1.54560 1.09351 1.31079 1.15585 0.80127 0.80730 0.82020 1.90887 1.43917 1.76914 1.34580 1.44775 1.57831 1.06501 1.28490 1.20820 1.00408 0.88349 0.90352 1.19740 0.86722 0.85911 0.86357 1.90501 1.44832 1.83919 1.29168 1.41780 1.46519 1.07788 1.22193 1.19727 1.30986 0.83884 1.08881 0.87674 1.25324 0.96727 1.00437 0.95187 1.69614 1.37959 1.33817 1.12046 0.85814 0.79370 0.81060 0.77797 1.20255 1.20786 1.19305 1.22622 1.04902 0.91243 0.99050 1.23123 0.97175 0.96991 1.03155 1.23540 0.94088 1.01729 1.03824 1.20594 0.75876 0.78165 0.85780 1.93158 1.89722 1.35657 1.96532 1.93216 1.86977 1.81874 1.53571 1.93190 1.29460 1.95999 1.96708 0.87315 0.91198 0.90552 0.76267 0.75410 0.89811 0.89849 0.77009 0.91563 0.84534 0.87999 0.88073 0.88138 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 7.89 37.16 0.29 -1.46 16 2 C 0.20 2.07 0.46 -131.82 -0.06 2.01 16 3 N -0.74 -8.61 4.98 -52.42 -0.26 -8.87 16 4 C 0.72 10.49 7.85 -86.92 -0.68 9.81 16 5 O -0.58 -9.77 12.90 5.29 0.07 -9.70 16 6 N -0.72 -11.30 5.53 -66.41 -0.37 -11.66 16 7 C 0.13 2.26 6.15 -5.19 -0.03 2.23 16 8 C 0.43 9.50 7.85 -10.99 -0.09 9.42 16 9 O -0.60 -14.93 15.24 5.55 0.08 -14.84 16 10 N -0.55 -13.28 5.29 -10.96 -0.06 -13.34 16 11 C -0.31 -8.17 9.68 -14.94 -0.14 -8.32 16 12 H 0.11 2.94 7.16 -52.48 -0.38 2.56 16 13 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 14 N -0.89 -23.56 13.05 55.50 0.72 -22.84 16 15 Si 0.93 20.30 29.55 -169.99 -5.02 15.28 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 C -0.16 -1.69 4.88 -90.62 -0.44 -2.13 16 20 C -0.17 -1.45 9.17 -26.73 -0.25 -1.70 16 21 C -0.20 -1.78 8.95 -26.72 -0.24 -2.02 16 22 C 0.45 4.44 1.85 37.16 0.07 4.51 16 23 F -0.17 -1.57 12.97 2.25 0.03 -1.54 16 24 F -0.18 -1.79 16.66 2.25 0.04 -1.75 16 25 F -0.17 -1.74 14.73 2.25 0.03 -1.71 16 26 H 0.11 1.35 6.10 -51.93 -0.32 1.03 16 27 H 0.07 0.70 7.75 -51.92 -0.40 0.29 16 28 H 0.08 0.65 6.71 -51.93 -0.35 0.30 16 29 H 0.40 4.07 8.34 -40.82 -0.34 3.73 16 30 H 0.41 6.36 7.46 -40.82 -0.30 6.05 16 31 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.40 9.21 7.90 -40.82 -0.32 8.89 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.14 1.75 6.70 -51.93 -0.35 1.40 16 36 H 0.10 0.81 5.94 -51.93 -0.31 0.51 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 0.94 4.52 -51.93 -0.23 0.70 16 LS Contribution 331.91 15.07 5.00 5.00 Total: -1.00 -29.41 331.91 -5.53 -34.94 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -4.13 Total: 18.11 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: -1.67 Total: 12.93 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.04 Total: -56.71 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.15 Total: -24.55 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.10 Total: -5.00 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.41 -5.53 -34.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933569823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.894 kcal (2) G-P(sol) polarization free energy of solvation -29.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds