Wall clock time and date at job start Tue Mar 31 2020 13:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47200 * 2 1 4 4 C 1.34776 * 119.99996 * 56.68511 * 3 2 1 5 5 O 1.21588 * 119.99916 * 5.08991 * 4 3 2 6 6 N 1.34779 * 119.99942 * 185.07958 * 4 3 2 7 7 C 1.46499 * 119.99993 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47078 * 180.02562 * 7 6 4 9 9 O 1.21294 * 119.99792 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99823 * 179.97438 * 8 7 6 11 11 C 1.37095 * 119.99976 * 179.97438 * 10 8 7 12 12 H 1.08006 * 119.99719 * 0.02562 * 11 10 8 13 13 C 1.38946 * 120.00320 * 180.02562 * 11 10 8 14 14 N 1.31415 * 119.99793 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47392 * 89.99417 * 15 13 11 17 17 H 1.48500 * 109.47085 * 209.99966 * 15 13 11 18 18 H 1.48506 * 109.46851 * 329.99917 * 15 13 11 19 19 C 1.52999 * 109.46782 * 119.99775 * 2 1 3 20 20 C 1.53002 * 117.50175 * 55.00064 * 19 2 1 21 21 C 1.53006 * 60.00092 * 107.48843 * 20 19 2 22 22 C 1.52997 * 109.47046 * 239.99749 * 2 1 3 23 23 F 1.39901 * 109.47249 * 297.83585 * 22 2 1 24 24 F 1.39898 * 109.47298 * 57.84489 * 22 2 1 25 25 F 1.39906 * 109.47057 * 177.84087 * 22 2 1 26 26 H 1.09000 * 109.47574 * 300.00238 * 1 2 3 27 27 H 1.09008 * 109.47099 * 60.00350 * 1 2 3 28 28 H 1.08996 * 109.47082 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99728 * 236.68860 * 3 2 1 30 30 H 0.96996 * 119.99749 * 0.02562 * 6 4 3 31 31 H 1.09008 * 109.47048 * 300.00826 * 7 6 4 32 32 H 1.08994 * 109.47329 * 60.00341 * 7 6 4 33 33 H 0.96999 * 120.00433 * 0.02562 * 10 8 7 34 34 H 0.97003 * 120.00035 * 180.02562 * 14 13 11 35 35 H 1.08997 * 115.56071 * 269.30941 * 19 2 1 36 36 H 1.09005 * 117.49364 * 0.02562 * 20 19 2 37 37 H 1.09000 * 117.49955 * 214.97785 * 20 19 2 38 38 H 1.08997 * 117.49637 * 107.48718 * 21 20 19 39 39 H 1.09001 * 117.49954 * 252.49130 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.6386 2.2303 0.9754 5 8 0.9665 1.8268 1.9049 6 7 2.0039 3.5264 0.9205 7 6 1.5916 4.4492 1.9810 8 6 2.1253 5.8268 1.6837 9 8 2.7848 6.0190 0.6841 10 7 1.8689 6.8455 2.5282 11 6 2.3549 8.0986 2.2580 12 1 2.9428 8.2696 1.3683 13 6 2.0911 9.1488 3.1288 14 7 1.3761 8.9406 4.2116 15 14 2.7526 10.8564 2.7603 16 1 1.7608 11.6072 1.9493 17 1 2.9977 11.5780 4.0349 18 1 4.0253 10.7416 2.0038 19 6 2.0399 -0.7212 1.2493 20 6 1.5415 -2.1467 1.4950 21 6 2.9839 -1.9077 1.0442 22 6 2.0400 -0.7213 -1.2492 23 9 1.6147 -2.0539 -1.2245 24 9 1.5336 -0.0911 -2.3910 25 9 3.4381 -0.6784 -1.2743 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 2.6150 1.6847 -0.7020 30 1 2.5399 3.8482 0.1789 31 1 0.5032 4.4841 2.0294 32 1 1.9868 4.1045 2.9365 33 1 1.3412 6.6919 3.3274 34 1 1.1916 9.6738 4.8193 35 1 2.2078 -0.0894 2.1214 36 1 0.8506 -2.5709 0.7664 37 1 1.3815 -2.4527 2.5289 38 1 3.7728 -2.0564 1.7815 39 1 3.2417 -2.1748 0.0194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933569823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:40 Heat of formation + Delta-G solvation = -200.758166 kcal Electronic energy + Delta-G solvation = -28152.040930 eV Core-core repulsion = 23487.417974 eV Total energy + Delta-G solvation = -4664.622956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.46102 -48.86165 -48.79913 -41.59364 -40.21553 -38.85686 -36.25070 -35.74291 -35.28936 -33.36829 -31.91667 -28.99836 -27.71813 -26.36172 -24.59605 -23.30138 -22.72903 -21.38725 -21.18973 -20.11336 -19.84683 -19.69277 -19.59599 -18.60045 -17.38818 -17.01450 -16.92057 -16.62570 -16.37693 -15.90956 -15.77137 -15.73340 -15.58260 -15.31394 -15.22144 -15.06793 -15.05657 -14.90973 -14.63819 -13.95316 -13.85210 -13.53582 -13.47326 -13.44335 -13.19426 -12.90165 -12.44663 -12.34301 -12.24579 -12.12325 -11.56331 -11.54123 -11.20181 -11.13184 -10.54421 -10.51956 -10.10690 -9.99557 -8.50199 -6.00099 1.10590 1.37125 1.43696 1.53939 1.57400 1.90394 2.00996 2.28026 2.43167 2.71458 2.81699 2.89908 3.06618 3.17393 3.21205 3.50838 3.75377 3.91346 4.11349 4.22701 4.27292 4.45035 4.48766 4.53249 4.66521 4.72454 4.95720 5.00295 5.13458 5.18006 5.24433 5.33440 5.39856 5.71925 5.93449 6.49378 6.86522 7.04955 7.38582 7.47450 7.96305 8.66654 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.030083 B = 0.002482 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.538114 B =11278.043377 C =11654.918632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.192 3.808 3 N -0.730 5.730 4 C 0.719 3.281 5 O -0.604 6.604 6 N -0.722 5.722 7 C 0.144 3.856 8 C 0.433 3.567 9 O -0.625 6.625 10 N -0.559 5.559 11 C -0.337 4.337 12 H 0.086 0.914 13 C -0.010 4.010 14 N -0.916 5.916 15 Si 0.995 3.005 16 H -0.271 1.271 17 H -0.272 1.272 18 H -0.270 1.270 19 C -0.175 4.175 20 C -0.155 4.155 21 C -0.190 4.190 22 C 0.458 3.542 23 F -0.163 7.163 24 F -0.176 7.176 25 F -0.173 7.173 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.410 0.590 30 H 0.410 0.590 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.399 0.601 34 H 0.280 0.720 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 -22.151 -7.490 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.103 3.897 3 N -0.388 5.388 4 C 0.419 3.581 5 O -0.483 6.483 6 N -0.379 5.379 7 C 0.015 3.985 8 C 0.220 3.780 9 O -0.513 6.513 10 N -0.195 5.195 11 C -0.466 4.466 12 H 0.104 0.896 13 C -0.210 4.210 14 N -0.556 5.556 15 Si 0.818 3.182 16 H -0.196 1.196 17 H -0.197 1.197 18 H -0.195 1.195 19 C -0.194 4.194 20 C -0.193 4.193 21 C -0.227 4.227 22 C 0.403 3.597 23 F -0.144 7.144 24 F -0.157 7.157 25 F -0.154 7.154 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.247 0.753 30 H 0.247 0.753 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.234 0.766 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.018 -22.231 -7.171 23.381 hybrid contribution 0.695 1.189 -0.430 1.443 sum -0.324 -21.042 -7.601 22.375 Atomic orbital electron populations 1.22322 0.90075 1.05113 1.05008 1.20693 0.97371 0.81303 0.90288 1.44700 1.54122 1.09559 1.30371 1.15558 0.79837 0.80451 0.82271 1.90883 1.44777 1.77146 1.35524 1.44701 1.58235 1.06789 1.28157 1.20608 1.00821 0.85721 0.91301 1.20466 0.85266 0.87137 0.85170 1.90479 1.45771 1.84833 1.30214 1.41823 1.47115 1.07723 1.22803 1.19722 1.32289 0.85542 1.09041 0.89639 1.26095 0.96601 1.03572 0.94777 1.69677 1.38382 1.35002 1.12521 0.84894 0.78620 0.76710 0.77929 1.19601 1.19696 1.19490 1.22474 1.06901 0.91814 0.98237 1.23226 0.97000 0.95027 1.04006 1.23580 0.94547 1.00419 1.04132 1.20379 0.75775 0.78292 0.85267 1.93172 1.89651 1.35103 1.96480 1.93220 1.86991 1.81957 1.53570 1.93194 1.29521 1.96021 1.96684 0.89376 0.90957 0.88592 0.75340 0.75290 0.88601 0.88703 0.76646 0.91087 0.86867 0.86986 0.87226 0.87549 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 7.89 71.98 0.57 -2.65 16 2 C 0.19 3.83 0.46 3.60 0.00 3.83 16 3 N -0.73 -16.30 4.98 -438.01 -2.18 -18.48 16 4 C 0.72 20.58 7.85 179.05 1.40 21.99 16 5 O -0.60 -19.85 12.90 -3.99 -0.05 -19.90 16 6 N -0.72 -22.24 5.53 -482.29 -2.67 -24.90 16 7 C 0.14 4.96 6.15 85.63 0.53 5.48 16 8 C 0.43 19.34 7.85 87.66 0.69 20.02 16 9 O -0.62 -31.53 15.24 -3.07 -0.05 -31.57 16 10 N -0.56 -27.43 5.29 -306.98 -1.62 -29.05 16 11 C -0.34 -18.28 9.68 84.04 0.81 -17.47 16 12 H 0.09 4.90 7.16 -2.91 -0.02 4.88 16 13 C -0.01 -0.50 5.50 84.92 0.47 -0.03 16 14 N -0.92 -48.05 13.05 21.66 0.28 -47.77 16 15 Si 1.00 41.34 29.55 68.60 2.03 43.36 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 C -0.17 -3.51 4.88 -10.79 -0.05 -3.56 16 20 C -0.16 -2.39 9.17 30.60 0.28 -2.11 16 21 C -0.19 -3.14 8.95 30.60 0.27 -2.87 16 22 C 0.46 8.19 1.85 71.98 0.13 8.33 16 23 F -0.16 -2.64 12.97 44.97 0.58 -2.06 16 24 F -0.18 -3.29 16.66 44.97 0.75 -2.54 16 25 F -0.17 -3.20 14.73 44.97 0.66 -2.54 16 26 H 0.09 2.12 6.10 -2.39 -0.01 2.11 16 27 H 0.07 1.34 7.75 -2.38 -0.02 1.32 16 28 H 0.10 1.42 6.71 -2.39 -0.02 1.41 16 29 H 0.41 7.87 8.34 -92.71 -0.77 7.10 16 30 H 0.41 12.58 7.46 -92.71 -0.69 11.89 16 31 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 32 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.40 18.78 7.90 -92.71 -0.73 18.04 16 34 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 35 H 0.11 2.87 6.70 -2.39 -0.02 2.86 16 36 H 0.11 1.49 5.94 -2.38 -0.01 1.48 16 37 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.10 1.69 4.52 -2.39 -0.01 1.68 16 Total: -1.00 -62.09 331.91 1.80 -60.29 By element: Atomic # 1 Polarization: 45.24 SS G_CDS: -1.03 Total: 44.20 kcal Atomic # 6 Polarization: 25.86 SS G_CDS: 5.10 Total: 30.96 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -6.19 Total: -120.21 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -0.10 Total: -51.47 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 2.00 Total: -7.13 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Total: -62.09 1.80 -60.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933569823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.473 kcal (2) G-P(sol) polarization free energy of solvation -62.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds