Wall clock time and date at job start Tue Mar 31 2020 14:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47080 * 119.99899 * 9 7 5 12 12 H 1.48502 * 109.47342 * 239.99982 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 2 16 16 O 1.21603 * 120.00257 * 359.72088 * 15 14 13 17 17 C 1.47402 * 119.99679 * 179.72400 * 15 14 13 18 18 C 1.40064 * 120.17555 * 269.99796 * 17 15 14 19 19 C 1.39135 * 119.71406 * 180.02562 * 18 17 15 20 20 C 1.38530 * 119.97461 * 0.02562 * 19 18 17 21 21 C 1.38395 * 120.42783 * 359.97438 * 20 19 18 22 22 C 1.38099 * 120.32521 * 359.71212 * 21 20 19 23 23 F 1.35100 * 120.05003 * 180.30373 * 22 21 20 24 24 O 1.36605 * 108.59257 * 180.02562 * 19 18 17 25 25 C 1.43993 * 105.43231 * 17.26536 * 24 19 18 26 26 O 1.36228 * 131.53741 * 359.97438 * 18 17 15 27 27 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 28 28 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 29 29 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 32 32 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 33 33 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 35 35 H 0.97000 * 120.00572 * 179.97438 * 8 7 5 36 36 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 37 37 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 38 38 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 39 39 H 1.08002 * 119.78393 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.83370 * 180.02562 * 21 20 19 41 41 H 1.09001 * 110.57610 * 91.47896 * 25 24 19 42 42 H 1.09005 * 110.57854 * 214.21811 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 0.4247 1.5663 -4.8531 11 1 2.4037 0.8643 -6.0656 12 1 0.4226 -0.5343 -6.0654 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8818 -0.4877 3.6695 16 8 2.5809 -1.4764 3.7812 17 6 1.3955 0.2108 4.8730 18 6 2.1521 1.2430 5.4420 19 6 1.6842 1.8955 6.5783 20 6 0.4749 1.5226 7.1419 21 6 -0.2747 0.5030 6.5817 22 6 0.1723 -0.1504 5.4502 23 9 -0.5668 -1.1408 4.9044 24 8 2.5913 2.8523 6.9358 25 6 3.4169 3.0511 5.7729 26 8 3.3498 1.7865 5.0870 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2494 34 1 1.6766 -1.7490 -1.2492 35 1 2.8594 -1.8841 -4.7335 36 1 3.1300 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2493 38 1 0.9942 0.7584 2.3564 39 1 0.1148 2.0309 8.0242 40 1 -1.2164 0.2204 7.0287 41 1 3.0137 3.8485 5.1486 42 1 4.4426 3.2764 6.0652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935991934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:34 Heat of formation + Delta-G solvation = -124.549939 kcal Electronic energy + Delta-G solvation = -27490.293205 eV Core-core repulsion = 23350.911664 eV Total energy + Delta-G solvation = -4139.381540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.27277 -42.66400 -39.73827 -37.85875 -37.07749 -36.66057 -33.66603 -32.20797 -31.31640 -30.13367 -27.17879 -26.52776 -26.46685 -26.23878 -24.32448 -23.41314 -22.73861 -20.69845 -19.05547 -18.89723 -18.20355 -17.89552 -17.41199 -16.52873 -16.38861 -16.05313 -15.77690 -15.51971 -15.31162 -14.80146 -14.67378 -14.51450 -13.92010 -13.77464 -13.57842 -13.40797 -13.17383 -13.00933 -12.93692 -12.78051 -12.16182 -12.09957 -12.06233 -11.18683 -11.17130 -11.03636 -10.84578 -10.65772 -10.43414 -10.26494 -10.06438 -9.89811 -9.36920 -9.20106 -8.92771 -8.82100 -8.51067 -8.36888 -6.00598 -4.01944 0.39416 0.50673 2.17177 2.53131 2.80424 2.89131 3.19457 3.29600 3.37790 3.40053 3.84589 4.00099 4.24028 4.41400 4.44480 4.45489 4.59494 4.71293 4.88143 5.31665 5.34953 5.36615 5.46108 5.49606 5.57496 5.60449 5.72926 5.90458 6.15074 6.20160 6.25246 6.37066 6.48810 6.54948 6.61503 6.71216 7.03552 7.05973 7.10268 7.58289 7.63847 7.75392 7.98017 8.22915 8.39942 9.02976 9.61266 11.10909 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.002917 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.850569 B = 9598.160057 C =10113.802743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.126 3.874 14 N -0.705 5.705 15 C 0.561 3.439 16 O -0.524 6.524 17 C -0.142 4.142 18 C 0.099 3.901 19 C 0.020 3.980 20 C -0.058 4.058 21 C -0.144 4.144 22 C 0.145 3.855 23 F -0.117 7.117 24 O -0.303 6.303 25 C 0.211 3.789 26 O -0.292 6.292 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.259 0.741 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.400 0.600 39 H 0.151 0.849 40 H 0.158 0.842 41 H 0.092 0.908 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.786 10.440 23.145 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.356 5.356 15 C 0.344 3.656 16 O -0.400 6.400 17 C -0.147 4.147 18 C 0.052 3.948 19 C -0.025 4.025 20 C -0.077 4.077 21 C -0.163 4.163 22 C 0.125 3.875 23 F -0.095 7.095 24 O -0.219 6.219 25 C 0.100 3.900 26 O -0.207 6.207 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.235 0.765 39 H 0.168 0.832 40 H 0.176 0.824 41 H 0.110 0.890 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.988 9.620 23.086 25.326 hybrid contribution -0.408 0.754 -1.121 1.411 sum -4.396 10.373 21.965 24.686 Atomic orbital electron populations 1.21768 0.95166 1.01302 1.00247 1.20920 0.95575 0.95867 0.94921 1.21765 1.00593 0.95873 1.00197 1.19096 0.96389 0.95269 0.89385 1.21214 1.31151 1.12048 0.90481 0.92189 1.25014 0.95317 0.95082 0.99097 1.69972 1.37013 1.23008 1.23352 0.86593 0.78596 0.79678 0.83449 1.19804 1.21144 1.21118 1.21743 0.99150 0.96201 0.82507 1.46173 1.52295 1.31719 1.05411 1.17687 0.80862 0.84140 0.82899 1.90837 1.37229 1.25486 1.86496 1.18843 0.95015 1.00320 1.00502 1.19230 0.85815 0.95493 0.94250 1.19669 0.93309 0.94091 0.95417 1.19943 0.89698 0.97172 1.00904 1.20828 1.02425 0.97307 0.95740 1.17051 0.88512 0.88491 0.93469 1.91598 1.74910 1.58093 1.84909 1.87423 1.42623 1.55695 1.36170 1.25809 0.98070 0.85708 0.80427 1.87460 1.31955 1.33572 1.67741 0.95306 0.91327 0.93214 0.93288 0.91327 0.95381 0.96289 0.96245 0.93077 0.91459 0.91383 0.76454 0.83151 0.82440 0.89040 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.51 7.65 -34.44 -0.26 -13.78 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.13 2.31 4.56 -4.04 -0.02 2.29 16 14 N -0.71 -11.09 4.96 -61.39 -0.30 -11.40 16 15 C 0.56 9.45 6.87 -12.53 -0.09 9.37 16 16 O -0.52 -10.89 17.11 5.27 0.09 -10.80 16 17 C -0.14 -1.92 5.64 -104.83 -0.59 -2.51 16 18 C 0.10 1.21 6.89 -38.56 -0.27 0.94 16 19 C 0.02 0.19 7.14 -39.14 -0.28 -0.09 16 20 C -0.06 -0.43 10.04 -39.42 -0.40 -0.82 16 21 C -0.14 -1.11 10.00 -39.57 -0.40 -1.51 16 22 C 0.15 1.65 7.28 -38.98 -0.28 1.37 16 23 F -0.12 -1.50 16.83 2.25 0.04 -1.46 16 24 O -0.30 -2.77 11.41 -46.04 -0.53 -3.29 16 25 C 0.21 1.58 8.89 101.05 0.90 2.48 16 26 O -0.29 -3.54 11.39 -44.81 -0.51 -4.05 16 27 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 28 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 32 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.40 5.41 6.15 -40.82 -0.25 5.16 16 39 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.16 0.74 8.06 -52.48 -0.42 0.31 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -33.45 355.29 -6.83 -40.28 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.31 Total: 0.30 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.38 Total: -5.39 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.43 Total: -37.06 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.95 Total: -18.15 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.45 -6.83 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935991934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.270 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds