Wall clock time and date at job start Tue Mar 31 2020 14:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47080 * 119.99899 * 9 7 5 12 12 H 1.48502 * 109.47342 * 239.99982 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 2 16 16 O 1.21603 * 120.00257 * 359.72088 * 15 14 13 17 17 C 1.47402 * 119.99679 * 179.72400 * 15 14 13 18 18 C 1.40064 * 120.17555 * 269.99796 * 17 15 14 19 19 C 1.39135 * 119.71406 * 180.02562 * 18 17 15 20 20 C 1.38530 * 119.97461 * 0.02562 * 19 18 17 21 21 C 1.38395 * 120.42783 * 359.97438 * 20 19 18 22 22 C 1.38099 * 120.32521 * 359.71212 * 21 20 19 23 23 F 1.35100 * 120.05003 * 180.30373 * 22 21 20 24 24 O 1.36605 * 108.59257 * 180.02562 * 19 18 17 25 25 C 1.43993 * 105.43231 * 17.26536 * 24 19 18 26 26 O 1.36228 * 131.53741 * 359.97438 * 18 17 15 27 27 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 28 28 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 29 29 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 32 32 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 33 33 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 35 35 H 0.97000 * 120.00572 * 179.97438 * 8 7 5 36 36 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 37 37 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 38 38 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 39 39 H 1.08002 * 119.78393 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.83370 * 180.02562 * 21 20 19 41 41 H 1.09001 * 110.57610 * 91.47896 * 25 24 19 42 42 H 1.09005 * 110.57854 * 214.21811 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 0.4247 1.5663 -4.8531 11 1 2.4037 0.8643 -6.0656 12 1 0.4226 -0.5343 -6.0654 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8818 -0.4877 3.6695 16 8 2.5809 -1.4764 3.7812 17 6 1.3955 0.2108 4.8730 18 6 2.1521 1.2430 5.4420 19 6 1.6842 1.8955 6.5783 20 6 0.4749 1.5226 7.1419 21 6 -0.2747 0.5030 6.5817 22 6 0.1723 -0.1504 5.4502 23 9 -0.5668 -1.1408 4.9044 24 8 2.5913 2.8523 6.9358 25 6 3.4169 3.0511 5.7729 26 8 3.3498 1.7865 5.0870 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2494 34 1 1.6766 -1.7490 -1.2492 35 1 2.8594 -1.8841 -4.7335 36 1 3.1300 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2493 38 1 0.9942 0.7584 2.3564 39 1 0.1148 2.0309 8.0242 40 1 -1.2164 0.2204 7.0287 41 1 3.0137 3.8485 5.1486 42 1 4.4426 3.2764 6.0652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935991934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:34 Heat of formation + Delta-G solvation = -147.077372 kcal Electronic energy + Delta-G solvation = -27491.270067 eV Core-core repulsion = 23350.911664 eV Total energy + Delta-G solvation = -4140.358403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.15403 -43.37468 -41.07190 -38.93228 -38.35254 -37.43696 -35.35194 -34.04651 -32.24996 -30.83295 -29.13923 -28.00836 -27.87794 -26.86056 -25.58621 -24.43622 -24.12570 -21.94599 -20.29305 -19.74560 -19.12683 -18.93307 -18.38790 -18.32160 -17.47939 -17.10999 -16.76972 -16.53846 -16.42692 -16.27941 -15.98153 -15.48054 -15.21180 -15.08988 -14.80592 -14.40802 -14.36498 -14.13599 -13.98039 -13.96931 -13.66699 -13.62867 -12.94640 -12.91010 -12.70739 -12.64138 -12.38024 -12.26637 -11.98598 -11.82549 -11.59008 -11.43200 -10.98781 -10.87073 -10.53011 -10.27844 -10.17790 -9.22694 -8.14581 -6.22664 -0.38778 -0.21587 1.22363 1.41867 1.42755 1.52172 1.54648 1.92287 2.12167 2.27549 2.44235 3.11250 3.17871 3.20061 3.55378 3.66005 3.81234 3.87901 3.91679 4.01611 4.13230 4.16797 4.30527 4.59020 4.63035 4.63738 4.65898 4.72258 4.86891 4.90781 4.94364 5.01876 5.08489 5.24439 5.25020 5.39657 5.46766 5.48518 5.54069 5.76462 5.85831 5.88325 6.25334 6.32437 6.92328 6.94024 7.45237 8.98297 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.002917 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.850569 B = 9598.160057 C =10113.802743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.256 1.256 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.138 3.862 14 N -0.692 5.692 15 C 0.561 3.439 16 O -0.575 6.575 17 C -0.168 4.168 18 C 0.079 3.921 19 C 0.021 3.979 20 C -0.038 4.038 21 C -0.120 4.120 22 C 0.127 3.873 23 F -0.132 7.132 24 O -0.306 6.306 25 C 0.203 3.797 26 O -0.324 6.324 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.065 0.935 33 H -0.014 1.014 34 H -0.013 1.013 35 H 0.260 0.740 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.414 0.586 39 H 0.193 0.807 40 H 0.197 0.803 41 H 0.116 0.884 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 13.592 25.370 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.015 3.985 14 N -0.344 5.344 15 C 0.347 3.653 16 O -0.455 6.455 17 C -0.173 4.173 18 C 0.033 3.967 19 C -0.024 4.024 20 C -0.057 4.057 21 C -0.138 4.138 22 C 0.107 3.893 23 F -0.110 7.110 24 O -0.222 6.222 25 C 0.093 3.907 26 O -0.240 6.240 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.005 0.995 34 H 0.005 0.995 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.252 0.748 39 H 0.210 0.790 40 H 0.214 0.786 41 H 0.133 0.867 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.240 12.825 25.326 29.066 hybrid contribution 0.326 -0.204 -1.708 1.751 sum -5.915 12.621 23.618 27.424 Atomic orbital electron populations 1.21698 0.93431 1.01121 1.01651 1.20725 0.96842 0.96364 0.92519 1.21689 0.99983 0.94518 1.01610 1.18964 0.94317 0.94234 0.92169 1.21609 1.30426 1.12084 0.90945 0.90774 1.25961 0.95644 0.95861 1.02774 1.70131 1.38845 1.24982 1.24069 0.85470 0.78039 0.78832 0.79138 1.17914 1.21064 1.21069 1.21366 0.98020 0.95618 0.83528 1.45966 1.52107 1.31770 1.04512 1.18276 0.79660 0.83438 0.83963 1.90796 1.39496 1.27867 1.87344 1.18663 0.96868 1.01871 0.99919 1.19365 0.86082 0.95835 0.95422 1.19951 0.94035 0.93822 0.94623 1.20482 0.88059 0.96002 1.01114 1.21260 1.03300 0.95724 0.93525 1.17372 0.88084 0.89011 0.94844 1.91560 1.75118 1.58926 1.85398 1.87410 1.42639 1.55345 1.36827 1.26292 0.99621 0.84551 0.80207 1.87418 1.32305 1.35484 1.68802 0.91574 0.92103 0.94275 0.94327 0.92104 0.91627 0.99521 0.99494 0.93160 0.93260 0.93124 0.74833 0.78990 0.78632 0.86700 0.81938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.21 8.05 71.98 0.58 -3.63 16 2 C -0.06 -2.50 0.54 -52.18 -0.03 -2.52 16 3 C -0.12 -4.15 8.05 71.98 0.58 -3.57 16 4 C 0.04 2.10 4.04 29.85 0.12 2.22 16 5 C -0.51 -27.55 7.65 25.60 0.20 -27.36 16 6 H 0.07 3.71 5.68 -2.91 -0.02 3.70 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 8 N -0.94 -57.46 13.29 21.45 0.28 -57.17 16 9 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 10 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 C 0.14 5.29 4.56 86.38 0.39 5.69 16 14 N -0.69 -21.98 4.96 -466.39 -2.31 -24.29 16 15 C 0.56 19.49 6.87 86.66 0.60 20.08 16 16 O -0.58 -25.30 17.11 -4.04 -0.07 -25.37 16 17 C -0.17 -4.48 5.64 -20.00 -0.11 -4.60 16 18 C 0.08 1.85 6.89 22.93 0.16 2.01 16 19 C 0.02 0.34 7.14 22.56 0.16 0.50 16 20 C -0.04 -0.38 10.04 22.38 0.22 -0.16 16 21 C -0.12 -1.36 10.00 22.27 0.22 -1.14 16 22 C 0.13 2.69 7.28 22.66 0.17 2.85 16 23 F -0.13 -3.27 16.83 44.97 0.76 -2.52 16 24 O -0.31 -4.71 11.41 -77.29 -0.88 -5.60 16 25 C 0.20 2.61 8.89 113.37 1.01 3.62 16 26 O -0.32 -7.66 11.39 -72.89 -0.83 -8.49 16 27 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 28 H 0.06 2.21 6.62 -2.38 -0.02 2.19 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 2.19 6.62 -2.38 -0.02 2.18 16 32 H 0.06 1.75 6.86 -2.39 -0.02 1.73 16 33 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 34 H -0.01 -0.77 8.14 -2.38 -0.02 -0.78 16 35 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.41 10.62 6.15 -92.71 -0.57 10.05 16 39 H 0.19 0.38 8.06 -2.91 -0.02 0.36 16 40 H 0.20 0.74 8.06 -2.91 -0.02 0.72 16 41 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.16 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -77.96 355.29 4.20 -73.76 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.50 Total: 9.89 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 4.73 Total: -5.85 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -2.03 Total: -81.46 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -1.78 Total: -39.46 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.76 Total: -2.52 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -77.96 4.20 -73.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935991934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.318 kcal (2) G-P(sol) polarization free energy of solvation -77.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds