Wall clock time and date at job start Tue Mar 31 2020 14:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 C 1.53001 * 109.47138 * 240.00085 * 2 1 3 5 5 O 1.45202 * 109.47339 * 120.00195 * 2 1 3 6 6 C 1.34722 * 116.99791 * 60.00000 * 5 2 1 7 7 O 1.21484 * 120.00718 * 0.02562 * 6 5 2 8 8 C 1.47582 * 119.99847 * 180.02562 * 6 5 2 9 9 C 1.39660 * 120.13692 * 0.02562 * 8 6 5 10 10 C 1.38461 * 119.79787 * 179.97438 * 9 8 6 11 11 N 1.40057 * 119.96084 * 179.97438 * 10 9 8 12 12 C 1.34775 * 120.00184 * 33.37363 * 11 10 9 13 13 O 1.21297 * 119.99644 * 5.28029 * 12 11 10 14 14 C 1.50700 * 120.00175 * 185.27847 * 12 11 10 15 15 C 1.50705 * 109.46970 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00149 * 0.02562 * 15 14 12 17 17 C 1.37880 * 119.99868 * 179.97438 * 15 14 12 18 18 N 1.31507 * 120.00081 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99660 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47316 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46781 * 120.00496 * 19 17 15 22 22 H 1.48499 * 109.46576 * 240.00003 * 19 17 15 23 23 C 1.39055 * 120.08260 * 359.97438 * 10 9 8 24 24 C 1.38113 * 120.28054 * 0.02562 * 23 10 9 25 25 C 1.38332 * 120.20241 * 359.97438 * 24 23 10 26 26 F 1.35096 * 120.04449 * 180.27400 * 25 24 23 27 27 H 1.09001 * 109.47163 * 299.99279 * 1 2 3 28 28 H 1.08991 * 109.47386 * 59.99692 * 1 2 3 29 29 H 1.09000 * 109.46677 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47220 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47046 * 300.00410 * 3 2 1 32 32 H 1.09005 * 109.47047 * 60.00252 * 3 2 1 33 33 H 1.09002 * 109.47536 * 300.00081 * 4 2 1 34 34 H 1.08999 * 109.46887 * 59.99612 * 4 2 1 35 35 H 1.08999 * 109.47462 * 179.97438 * 4 2 1 36 36 H 1.07999 * 120.10292 * 359.95364 * 9 8 6 37 37 H 0.97005 * 120.00297 * 213.37372 * 11 10 9 38 38 H 1.08993 * 109.46917 * 299.99696 * 14 12 11 39 39 H 1.08992 * 109.47554 * 60.00227 * 14 12 11 40 40 H 0.97001 * 120.00282 * 179.97438 * 18 17 15 41 41 H 1.07994 * 119.85961 * 180.02562 * 23 10 9 42 42 H 1.08000 * 119.90175 * 180.02562 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6521 -1.9732 1.3383 7 8 0.9516 -2.5105 0.5038 8 6 2.1065 -2.7322 2.5196 9 6 2.9114 -2.1172 3.4811 10 6 3.3333 -2.8358 4.5869 11 7 4.1411 -2.2226 5.5530 12 6 3.9865 -0.9122 5.8275 13 8 3.0863 -0.2861 5.3091 14 6 4.9322 -0.2249 6.7785 15 6 4.5449 1.2255 6.9114 16 1 3.6984 1.6108 6.3625 17 6 5.2706 2.0601 7.7346 18 7 6.3011 1.5908 8.4034 19 14 4.7900 3.8577 7.8999 20 1 3.6035 4.1330 7.0506 21 1 4.4629 4.1542 9.3178 22 1 5.9215 4.7146 7.4634 23 6 2.9561 -4.1654 4.7396 24 6 2.1602 -4.7769 3.7908 25 6 1.7320 -4.0700 2.6815 26 9 0.9490 -4.6696 1.7582 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 3.2042 -1.0845 3.3623 37 1 4.8117 -2.7411 6.0245 38 1 4.8792 -0.7064 7.7548 39 1 5.9494 -0.2950 6.3934 40 1 6.8119 2.1780 8.9823 41 1 3.2869 -4.7224 5.6037 42 1 1.8705 -5.8098 3.9157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143200817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:37 Heat of formation + Delta-G solvation = -146.420117 kcal Electronic energy + Delta-G solvation = -27352.476306 eV Core-core repulsion = 23212.146404 eV Total energy + Delta-G solvation = -4140.329902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.87169 -40.85809 -39.99423 -38.03765 -36.85787 -34.34533 -34.04331 -33.06856 -31.52150 -29.96147 -28.25327 -27.50322 -27.46560 -24.92581 -24.10483 -22.91579 -21.52880 -19.89618 -19.78744 -18.17765 -17.48883 -16.90372 -16.50328 -16.41552 -16.16221 -15.87703 -15.57701 -15.38179 -14.66099 -14.51889 -14.39389 -14.33045 -13.76414 -13.70157 -13.26127 -13.17475 -12.84814 -12.56601 -12.53367 -12.26104 -12.20710 -12.03775 -11.96764 -11.64137 -11.57565 -11.36710 -11.23190 -10.84817 -10.77218 -10.43016 -10.13477 -10.05976 -9.94926 -9.39149 -9.33609 -8.91747 -8.53794 -7.95465 -6.16096 -4.16494 0.49116 1.09826 2.43907 2.56018 3.26097 3.28215 3.35316 3.39561 3.48798 3.70435 4.11009 4.39227 4.42432 4.59354 4.63555 4.67465 4.81381 4.94235 5.11322 5.22964 5.33739 5.38052 5.42297 5.50461 5.61960 5.65571 5.72967 5.74993 5.86053 5.90759 5.95810 6.13598 6.13816 6.17170 6.24364 6.39263 6.49840 6.92616 7.03238 7.14803 7.71246 7.79455 7.87386 8.18040 8.84874 8.94868 9.49388 10.96115 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011508 B = 0.003783 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.429802 B = 7399.878691 C = 9476.118536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.118 3.882 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.337 6.337 6 C 0.516 3.484 7 O -0.496 6.496 8 C -0.146 4.146 9 C -0.043 4.043 10 C 0.144 3.856 11 N -0.689 5.689 12 C 0.513 3.487 13 O -0.517 6.517 14 C 0.007 3.993 15 C -0.512 4.512 16 H 0.077 0.923 17 C 0.057 3.943 18 N -0.899 5.899 19 Si 0.901 3.099 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.093 4.093 24 C -0.146 4.146 25 C 0.132 3.868 26 F -0.121 7.121 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.162 0.838 37 H 0.411 0.589 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.262 0.738 41 H 0.142 0.858 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.786 -10.481 -13.177 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.082 3.918 3 C -0.199 4.199 4 C -0.240 4.240 5 O -0.254 6.254 6 C 0.361 3.639 7 O -0.385 6.385 8 C -0.149 4.149 9 C -0.063 4.063 10 C 0.048 3.952 11 N -0.336 5.336 12 C 0.304 3.696 13 O -0.391 6.391 14 C -0.032 4.032 15 C -0.550 4.550 16 H 0.095 0.905 17 C -0.144 4.144 18 N -0.538 5.538 19 Si 0.729 3.271 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.114 4.114 24 C -0.165 4.165 25 C 0.111 3.889 26 F -0.099 7.099 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.179 0.821 37 H 0.248 0.752 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.160 0.840 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.498 -10.000 -13.691 18.157 hybrid contribution 0.026 0.532 0.262 0.594 sum -6.472 -9.468 -13.429 17.659 Atomic orbital electron populations 1.22497 0.94045 1.04695 1.02839 1.22211 0.94459 0.92411 0.82710 1.21863 1.02505 0.92358 1.03210 1.22498 1.01793 1.03075 0.96618 1.86672 1.69407 1.24250 1.45075 1.20702 0.77417 0.80749 0.84994 1.90771 1.35066 1.70091 1.42575 1.19074 1.06249 0.92787 0.96804 1.21511 0.93888 1.01636 0.89303 1.17832 0.95408 0.92217 0.89750 1.44239 1.37796 1.12060 1.39473 1.22441 0.85750 0.79358 0.82024 1.90590 1.32839 1.64095 1.51549 1.19292 0.93864 0.96616 0.93412 1.21167 1.14744 0.92383 1.26727 0.90474 1.24992 0.94837 0.99283 0.95315 1.69950 1.18827 1.36031 1.29034 0.86370 0.78659 0.84216 0.77891 1.19411 1.20953 1.20927 1.21044 0.97069 0.94097 0.99186 1.20828 1.01015 1.01121 0.93528 1.17544 0.93249 0.89597 0.88514 1.91562 1.71275 1.82917 1.64144 0.91733 0.91080 0.89857 0.91256 0.90398 0.91020 0.89836 0.91066 0.91912 0.82054 0.75239 0.93003 0.92820 0.92810 0.83989 0.83631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 8.37 37.16 0.31 -1.88 16 2 C 0.12 1.49 1.13 -90.62 -0.10 1.38 16 3 C -0.14 -1.53 8.85 37.16 0.33 -1.20 16 4 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 5 O -0.34 -5.26 9.13 -40.55 -0.37 -5.63 16 6 C 0.52 8.28 7.20 34.54 0.25 8.53 16 7 O -0.50 -8.23 10.87 -19.25 -0.21 -8.44 16 8 C -0.15 -2.26 5.88 -104.95 -0.62 -2.88 16 9 C -0.04 -0.69 8.22 -38.97 -0.32 -1.01 16 10 C 0.14 2.08 6.27 -83.71 -0.53 1.56 16 11 N -0.69 -10.47 5.34 -9.88 -0.05 -10.52 16 12 C 0.51 10.51 7.56 -10.99 -0.08 10.42 16 13 O -0.52 -12.23 13.15 5.54 0.07 -12.15 16 14 C 0.01 0.17 5.46 -29.03 -0.16 0.01 16 15 C -0.51 -13.99 8.92 -34.44 -0.31 -14.30 16 16 H 0.08 2.21 6.75 -52.49 -0.35 1.85 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -25.20 13.29 55.43 0.74 -24.46 16 19 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.09 -1.02 9.95 -39.32 -0.39 -1.42 16 24 C -0.15 -1.59 10.00 -39.59 -0.40 -1.99 16 25 C 0.13 1.83 7.28 -38.94 -0.28 1.54 16 26 F -0.12 -1.79 15.54 2.25 0.03 -1.75 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.13 5.88 -51.93 -0.31 0.83 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.09 5.88 -51.93 -0.31 0.78 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.16 2.98 5.96 -52.49 -0.31 2.66 16 37 H 0.41 4.81 8.82 -40.82 -0.36 4.45 16 38 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -32.00 358.12 -6.92 -38.92 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.42 Total: 3.87 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -2.08 Total: -1.52 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.68 Total: -34.98 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.51 Total: -26.22 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.03 Total: -1.75 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.00 -6.92 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143200817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.503 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds