Wall clock time and date at job start Tue Mar 31 2020 14:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 C 1.53001 * 109.47138 * 240.00085 * 2 1 3 5 5 O 1.45202 * 109.47339 * 120.00195 * 2 1 3 6 6 C 1.34722 * 116.99791 * 60.00000 * 5 2 1 7 7 O 1.21484 * 120.00718 * 0.02562 * 6 5 2 8 8 C 1.47582 * 119.99847 * 180.02562 * 6 5 2 9 9 C 1.39660 * 120.13692 * 0.02562 * 8 6 5 10 10 C 1.38461 * 119.79787 * 179.97438 * 9 8 6 11 11 N 1.40057 * 119.96084 * 179.97438 * 10 9 8 12 12 C 1.34775 * 120.00184 * 33.37363 * 11 10 9 13 13 O 1.21297 * 119.99644 * 5.28029 * 12 11 10 14 14 C 1.50700 * 120.00175 * 185.27847 * 12 11 10 15 15 C 1.50705 * 109.46970 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00149 * 0.02562 * 15 14 12 17 17 C 1.37880 * 119.99868 * 179.97438 * 15 14 12 18 18 N 1.31507 * 120.00081 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99660 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47316 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46781 * 120.00496 * 19 17 15 22 22 H 1.48499 * 109.46576 * 240.00003 * 19 17 15 23 23 C 1.39055 * 120.08260 * 359.97438 * 10 9 8 24 24 C 1.38113 * 120.28054 * 0.02562 * 23 10 9 25 25 C 1.38332 * 120.20241 * 359.97438 * 24 23 10 26 26 F 1.35096 * 120.04449 * 180.27400 * 25 24 23 27 27 H 1.09001 * 109.47163 * 299.99279 * 1 2 3 28 28 H 1.08991 * 109.47386 * 59.99692 * 1 2 3 29 29 H 1.09000 * 109.46677 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47220 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47046 * 300.00410 * 3 2 1 32 32 H 1.09005 * 109.47047 * 60.00252 * 3 2 1 33 33 H 1.09002 * 109.47536 * 300.00081 * 4 2 1 34 34 H 1.08999 * 109.46887 * 59.99612 * 4 2 1 35 35 H 1.08999 * 109.47462 * 179.97438 * 4 2 1 36 36 H 1.07999 * 120.10292 * 359.95364 * 9 8 6 37 37 H 0.97005 * 120.00297 * 213.37372 * 11 10 9 38 38 H 1.08993 * 109.46917 * 299.99696 * 14 12 11 39 39 H 1.08992 * 109.47554 * 60.00227 * 14 12 11 40 40 H 0.97001 * 120.00282 * 179.97438 * 18 17 15 41 41 H 1.07994 * 119.85961 * 180.02562 * 23 10 9 42 42 H 1.08000 * 119.90175 * 180.02562 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6521 -1.9732 1.3383 7 8 0.9516 -2.5105 0.5038 8 6 2.1065 -2.7322 2.5196 9 6 2.9114 -2.1172 3.4811 10 6 3.3333 -2.8358 4.5869 11 7 4.1411 -2.2226 5.5530 12 6 3.9865 -0.9122 5.8275 13 8 3.0863 -0.2861 5.3091 14 6 4.9322 -0.2249 6.7785 15 6 4.5449 1.2255 6.9114 16 1 3.6984 1.6108 6.3625 17 6 5.2706 2.0601 7.7346 18 7 6.3011 1.5908 8.4034 19 14 4.7900 3.8577 7.8999 20 1 3.6035 4.1330 7.0506 21 1 4.4629 4.1542 9.3178 22 1 5.9215 4.7146 7.4634 23 6 2.9561 -4.1654 4.7396 24 6 2.1602 -4.7769 3.7908 25 6 1.7320 -4.0700 2.6815 26 9 0.9490 -4.6696 1.7582 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 3.2042 -1.0845 3.3623 37 1 4.8117 -2.7411 6.0245 38 1 4.8792 -0.7064 7.7548 39 1 5.9494 -0.2950 6.3934 40 1 6.8119 2.1780 8.9823 41 1 3.2869 -4.7224 5.6037 42 1 1.8705 -5.8098 3.9157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143200817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:36 Heat of formation + Delta-G solvation = -165.154288 kcal Electronic energy + Delta-G solvation = -27353.288681 eV Core-core repulsion = 23212.146404 eV Total energy + Delta-G solvation = -4141.142277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.99837 -42.02104 -41.32837 -39.36106 -38.02006 -35.67762 -35.15542 -35.10707 -32.57861 -31.59090 -29.77235 -28.44211 -28.37262 -26.04200 -25.92595 -24.14067 -22.74208 -21.36223 -20.88109 -19.36428 -18.69779 -18.45170 -17.95748 -17.79529 -17.31843 -17.12470 -16.98008 -16.51645 -16.39729 -16.05190 -15.57971 -15.36502 -14.89089 -14.79632 -14.67057 -14.36201 -14.20087 -14.02946 -13.71604 -13.43763 -13.25618 -13.14573 -13.01742 -12.95008 -12.79683 -12.71388 -12.61159 -12.55421 -12.23634 -12.06219 -11.48462 -11.43535 -11.39917 -11.12372 -10.65846 -10.61656 -10.30266 -9.16258 -8.25346 -6.31495 -0.60931 0.00062 1.27427 1.39973 1.42167 1.49996 1.55540 1.76660 2.11106 2.44835 2.52815 3.03488 3.11267 3.33286 3.62136 3.67327 3.72348 3.87579 3.94100 3.99366 4.27808 4.36386 4.48641 4.54373 4.64051 4.68959 4.74677 4.79239 4.80266 4.90841 4.94101 5.02978 5.04831 5.13312 5.18821 5.20533 5.26307 5.30282 5.40143 5.70832 5.79057 6.03302 6.56841 6.61732 6.81914 7.28451 7.40594 8.86650 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011508 B = 0.003783 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.429802 B = 7399.878691 C = 9476.118536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.102 3.898 3 C -0.139 4.139 4 C -0.176 4.176 5 O -0.355 6.355 6 C 0.511 3.489 7 O -0.509 6.509 8 C -0.166 4.166 9 C -0.059 4.059 10 C 0.124 3.876 11 N -0.666 5.666 12 C 0.519 3.481 13 O -0.556 6.556 14 C 0.011 3.989 15 C -0.535 4.535 16 H 0.055 0.945 17 C 0.015 3.985 18 N -0.922 5.922 19 Si 0.958 3.042 20 H -0.276 1.276 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.063 4.063 24 C -0.125 4.125 25 C 0.126 3.874 26 F -0.127 7.127 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.129 0.871 37 H 0.430 0.570 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.267 0.733 41 H 0.189 0.811 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 -11.961 -13.068 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.067 3.933 3 C -0.196 4.196 4 C -0.233 4.233 5 O -0.273 6.273 6 C 0.357 3.643 7 O -0.399 6.399 8 C -0.169 4.169 9 C -0.080 4.080 10 C 0.029 3.971 11 N -0.314 5.314 12 C 0.310 3.690 13 O -0.433 6.433 14 C -0.029 4.029 15 C -0.574 4.574 16 H 0.073 0.927 17 C -0.184 4.184 18 N -0.562 5.562 19 Si 0.783 3.217 20 H -0.201 1.201 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.083 4.083 24 C -0.144 4.144 25 C 0.105 3.895 26 F -0.106 7.106 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.270 0.730 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.206 0.794 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.574 -11.529 -13.581 18.989 hybrid contribution 0.041 0.912 0.179 0.930 sum -6.533 -10.617 -13.402 18.303 Atomic orbital electron populations 1.22458 0.93613 1.03687 1.03823 1.22618 0.95034 0.93255 0.82368 1.21901 1.02316 0.91260 1.04110 1.22440 1.01749 1.02072 0.97030 1.86677 1.69690 1.24312 1.46609 1.20935 0.77263 0.80926 0.85206 1.90750 1.35728 1.70363 1.43088 1.19155 1.07122 0.93828 0.96762 1.21236 0.95312 1.00621 0.90870 1.17995 0.96324 0.93689 0.89076 1.43691 1.38133 1.10319 1.39266 1.21792 0.84782 0.80997 0.81425 1.90585 1.34251 1.65570 1.52882 1.19105 0.94303 0.95214 0.94256 1.21378 1.14369 0.94815 1.26814 0.92662 1.25680 0.94808 1.02970 0.94976 1.70007 1.19391 1.37356 1.29411 0.85498 0.78244 0.79874 0.78057 1.20118 1.19901 1.19912 1.21464 0.94802 0.92109 0.99957 1.21294 0.99115 1.02577 0.91420 1.17871 0.93134 0.89160 0.89296 1.91547 1.71514 1.82810 1.64691 0.92597 0.88200 0.91763 0.91580 0.87231 0.92311 0.91762 0.88304 0.91904 0.85312 0.72974 0.92956 0.93126 0.92389 0.79423 0.79324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.31 8.37 71.98 0.60 -3.71 16 2 C 0.10 2.64 1.13 -10.79 -0.01 2.62 16 3 C -0.14 -2.98 8.85 71.98 0.64 -2.34 16 4 C -0.18 -3.94 8.37 71.98 0.60 -3.34 16 5 O -0.36 -11.80 9.13 -56.32 -0.51 -12.32 16 6 C 0.51 17.18 7.20 70.29 0.51 17.68 16 7 O -0.51 -17.53 10.87 19.89 0.22 -17.31 16 8 C -0.17 -5.23 5.88 -20.07 -0.12 -5.35 16 9 C -0.06 -1.98 8.22 22.67 0.19 -1.79 16 10 C 0.12 3.42 6.27 38.08 0.24 3.66 16 11 N -0.67 -19.54 5.34 -303.56 -1.62 -21.16 16 12 C 0.52 21.65 7.56 87.66 0.66 22.31 16 13 O -0.56 -27.41 13.15 -3.08 -0.04 -27.45 16 14 C 0.01 0.50 5.46 29.10 0.16 0.66 16 15 C -0.54 -30.01 8.92 25.60 0.23 -29.78 16 16 H 0.06 3.29 6.75 -2.91 -0.02 3.27 16 17 C 0.01 0.81 5.46 84.66 0.46 1.27 16 18 N -0.92 -51.68 13.29 21.45 0.28 -51.39 16 19 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 23 C -0.06 -1.13 9.95 22.44 0.22 -0.91 16 24 C -0.13 -2.23 10.00 22.26 0.22 -2.01 16 25 C 0.13 3.31 7.28 22.69 0.17 3.47 16 26 F -0.13 -3.63 15.54 44.97 0.70 -2.93 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.80 5.88 -2.39 -0.01 1.79 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.06 1.71 5.88 -2.39 -0.01 1.69 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.13 5.14 5.96 -2.91 -0.02 5.12 16 37 H 0.43 9.11 8.82 -92.70 -0.82 8.29 16 38 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 41 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -72.77 358.12 6.06 -66.71 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.25 Total: 17.37 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 4.77 Total: 2.45 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -1.34 Total: -72.56 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -0.34 Total: -57.08 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.70 Total: -2.93 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.77 6.06 -66.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143200817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.443 kcal (2) G-P(sol) polarization free energy of solvation -72.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds