Wall clock time and date at job start Tue Mar 31 2020 14:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46997 * 2 1 4 4 C 1.53005 * 109.46951 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46841 * 180.02562 * 4 3 2 6 6 C 1.32882 * 120.00022 * 270.00029 * 5 4 3 7 7 H 1.07998 * 119.99920 * 1.68597 * 6 5 4 8 8 C 1.46809 * 119.99727 * 181.68358 * 6 5 4 9 9 N 1.29310 * 120.00034 * 352.16039 * 8 6 5 10 10 Si 1.86800 * 119.99598 * 172.15656 * 8 6 5 11 11 H 1.48497 * 109.47074 * 90.00083 * 10 8 6 12 12 H 1.48503 * 109.47001 * 210.00386 * 10 8 6 13 13 H 1.48497 * 109.47369 * 329.99558 * 10 8 6 14 14 C 1.38772 * 119.99967 * 90.00481 * 5 4 3 15 15 N 1.32586 * 119.53996 * 268.73422 * 14 5 4 16 16 C 1.31537 * 121.79819 * 179.97438 * 15 14 5 17 17 C 1.39700 * 120.65352 * 0.02562 * 16 15 14 18 18 C 1.47570 * 120.49123 * 180.02562 * 17 16 15 19 19 O 1.21494 * 120.00321 * 180.02562 * 18 17 16 20 20 O 1.34736 * 119.99932 * 0.02562 * 18 17 16 21 21 C 1.45195 * 117.00128 * 180.02562 * 20 18 17 22 22 C 1.40221 * 119.02095 * 0.02562 * 17 16 15 23 23 C 1.38054 * 118.36086 * 359.97438 * 22 17 16 24 24 N 1.48015 * 120.37742 * 180.02562 * 23 22 17 25 25 O 1.31700 * 120.00237 * 354.83420 * 24 23 22 26 26 O 1.31700 * 120.00425 * 174.83000 * 24 23 22 27 27 H 1.09004 * 109.46943 * 299.99372 * 1 2 3 28 28 H 1.08995 * 109.47397 * 59.99854 * 1 2 3 29 29 H 1.09008 * 109.47117 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46943 * 240.00628 * 2 1 3 31 31 H 1.09001 * 109.47758 * 120.00744 * 2 1 3 32 32 H 1.08999 * 109.46967 * 60.00959 * 3 2 1 33 33 H 1.08995 * 109.47166 * 300.00287 * 3 2 1 34 34 H 1.09004 * 109.46998 * 60.00622 * 4 3 2 35 35 H 1.08998 * 109.47256 * 300.00625 * 4 3 2 36 36 H 0.97000 * 119.99798 * 185.00909 * 9 8 6 37 37 H 1.08003 * 119.67370 * 180.27852 * 16 15 14 38 38 H 1.09000 * 109.47206 * 179.97438 * 21 20 18 39 39 H 1.08995 * 109.47349 * 300.00065 * 21 20 18 40 40 H 1.09009 * 109.47293 * 60.00037 * 21 20 18 41 41 H 1.08001 * 120.82007 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8237 0.0000 6 6 4.2792 3.4508 -1.1505 7 1 4.0730 2.9518 -2.0858 8 6 4.8036 4.8221 -1.1501 9 7 4.9076 5.4742 -0.0384 10 14 5.3206 5.6247 -2.7557 11 1 4.1595 6.3338 -3.3510 12 1 6.4130 6.5960 -2.4943 13 1 5.8004 4.5823 -3.6983 14 6 4.2901 3.4771 1.2021 15 7 3.3194 4.1901 1.7564 16 6 3.4903 4.8268 2.8946 17 6 4.7151 4.7722 3.5643 18 6 4.9028 5.4875 4.8414 19 8 5.9719 5.4343 5.4161 20 8 3.8884 6.1994 5.3701 21 6 4.1445 6.8775 6.6282 22 6 5.7636 4.0278 3.0051 23 6 5.5397 3.3757 1.8090 24 7 6.6150 2.5769 1.1793 25 8 7.8224 2.5673 1.7053 26 8 6.3645 1.8757 0.0930 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9563 -0.8899 34 1 3.9329 0.9289 -0.8910 35 1 3.9337 0.9285 0.8890 36 1 5.1849 6.4037 -0.0455 37 1 2.6744 5.3940 3.3177 38 1 3.2481 7.4125 6.9417 39 1 4.4147 6.1441 7.3879 40 1 4.9633 7.5856 6.4993 41 1 6.7227 3.9662 3.4979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:16 Heat of formation + Delta-G solvation = -0.778431 kcal Electronic energy + Delta-G solvation = -28425.470150 eV Core-core repulsion = 24311.375706 eV Total energy + Delta-G solvation = -4114.094443 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.09853 -39.37036 -37.16897 -36.01576 -35.89914 -34.95523 -33.31179 -31.87315 -31.29754 -30.32928 -28.93625 -27.46016 -25.75103 -24.77323 -23.85917 -22.17279 -21.58256 -20.87009 -20.38999 -18.99155 -17.54702 -16.80346 -16.53235 -16.04777 -15.92075 -15.90914 -15.30002 -15.18833 -14.79653 -14.61354 -13.89925 -13.66752 -13.48877 -13.03462 -12.98773 -12.92998 -12.55351 -12.51542 -12.11656 -12.05936 -11.89823 -11.87870 -11.70065 -11.43959 -11.11334 -10.99392 -10.85570 -10.48181 -10.39689 -10.32771 -10.21407 -9.21767 -9.01174 -8.98470 -8.86708 -8.62340 -8.40243 -8.24769 -7.50143 -3.82432 0.69440 1.41735 2.53543 2.61035 2.70140 2.76263 3.07441 3.16804 3.21483 3.58836 3.74603 3.82367 4.70783 5.04398 5.09799 5.24170 5.27873 5.34309 5.35085 5.42696 5.55665 5.67839 5.74830 5.77903 5.84528 5.89780 5.95785 5.98780 6.02580 6.11271 6.20371 6.23704 6.27249 6.43283 6.59839 6.60608 6.89257 6.99592 7.02659 7.34138 7.95379 8.19198 8.27834 8.44010 9.04126 9.07571 9.35328 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009355 B = 0.005416 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.420570 B = 5168.838348 C = 6193.104264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.138 4.138 4 C 0.117 3.883 5 N -0.374 5.374 6 C 0.013 3.987 7 H 0.146 0.854 8 C -0.041 4.041 9 N -0.664 5.664 10 Si 0.958 3.042 11 H -0.259 1.259 12 H -0.264 1.264 13 H -0.248 1.248 14 C 0.293 3.707 15 N -0.425 5.425 16 C 0.080 3.920 17 C -0.197 4.197 18 C 0.520 3.480 19 O -0.526 6.526 20 O -0.356 6.356 21 C 0.038 3.962 22 C 0.032 3.968 23 C -0.030 4.030 24 N 0.017 4.983 25 O -0.442 6.442 26 O -0.370 6.370 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.312 0.688 37 H 0.148 0.852 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.755 1.927 -1.088 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.177 4.177 4 C -0.006 4.006 5 N -0.065 5.065 6 C -0.135 4.135 7 H 0.163 0.837 8 C -0.265 4.265 9 N -0.295 5.295 10 Si 0.779 3.221 11 H -0.184 1.184 12 H -0.188 1.188 13 H -0.171 1.171 14 C 0.055 3.945 15 N -0.134 5.134 16 C -0.095 4.095 17 C -0.204 4.204 18 C 0.367 3.633 19 O -0.416 6.416 20 O -0.273 6.273 21 C -0.056 4.056 22 C 0.005 3.995 23 C -0.144 4.144 24 N 0.383 4.617 25 O -0.550 6.550 26 O -0.492 6.492 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.165 0.835 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.834 1.809 -1.195 12.031 hybrid contribution 1.636 0.520 0.079 1.718 sum -10.198 2.329 -1.116 10.520 Atomic orbital electron populations 1.21744 0.95965 1.01115 1.01843 1.21467 0.95749 0.96836 1.01995 1.22118 0.95546 0.96646 1.03396 1.21943 0.93102 0.81642 1.03907 1.41782 1.50664 1.10948 1.03061 1.23365 1.10368 0.91352 0.88423 0.83660 1.27718 1.00386 0.96534 1.01878 1.68817 1.19190 1.12275 1.29188 0.85316 0.79674 0.79788 0.77370 1.18353 1.18764 1.17112 1.16171 0.87216 1.01325 0.89793 1.66987 1.31589 1.05360 1.09514 1.21781 0.94883 1.02584 0.90276 1.19244 0.97394 1.07811 0.95972 1.21153 0.81202 0.76077 0.84847 1.90789 1.27266 1.61424 1.62155 1.86565 1.41729 1.60876 1.38089 1.23155 1.02486 0.96536 0.83455 1.20792 0.98068 0.89736 0.90921 1.20228 0.90238 1.07348 0.96602 1.48651 1.01724 1.07667 1.03655 1.95999 1.05359 1.82171 1.71475 1.95888 1.90006 1.48358 1.14993 0.92739 0.92840 0.93126 0.92017 0.92055 0.90871 0.91469 0.89480 0.90571 0.87278 0.83458 0.88517 0.92273 0.92288 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.12 -1.40 5.93 -26.73 -0.16 -1.56 16 3 C -0.14 -1.93 5.54 -26.73 -0.15 -2.08 16 4 C 0.12 2.01 4.42 -4.04 -0.02 1.99 16 5 N -0.37 -7.67 1.16 -113.49 -0.13 -7.80 16 6 C 0.01 0.24 9.12 -13.63 -0.12 0.12 16 7 H 0.15 2.23 7.93 -52.49 -0.42 1.82 16 8 C -0.04 -0.79 5.60 -15.15 -0.08 -0.88 16 9 N -0.66 -14.20 9.86 56.00 0.55 -13.65 16 10 Si 0.96 14.87 29.66 -169.99 -5.04 9.83 16 11 H -0.26 -3.72 7.11 56.52 0.40 -3.32 16 12 H -0.26 -4.35 7.11 56.52 0.40 -3.95 16 13 H -0.25 -3.79 7.11 56.52 0.40 -3.39 16 14 C 0.29 6.66 3.53 -155.03 -0.55 6.11 16 15 N -0.43 -9.03 9.76 -12.09 -0.12 -9.15 16 16 C 0.08 1.60 10.78 -17.13 -0.18 1.41 16 17 C -0.20 -4.19 5.89 -104.80 -0.62 -4.81 16 18 C 0.52 10.28 7.90 34.54 0.27 10.55 16 19 O -0.53 -11.53 16.20 -19.26 -0.31 -11.85 16 20 O -0.36 -5.80 9.83 -40.59 -0.40 -6.20 16 21 C 0.04 0.46 10.56 101.05 1.07 1.53 16 22 C 0.03 0.78 9.22 -38.90 -0.36 0.42 16 23 C -0.03 -0.77 6.26 -79.62 -0.50 -1.27 16 24 N 0.02 0.50 4.98 34.12 0.17 0.67 16 25 O -0.44 -14.23 19.23 -31.57 -0.61 -14.83 16 26 O -0.37 -10.64 16.19 -31.57 -0.51 -11.15 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.38 8.02 -51.93 -0.42 0.96 16 35 H 0.08 1.44 8.04 -51.93 -0.42 1.03 16 36 H 0.31 6.15 8.27 -40.82 -0.34 5.81 16 37 H 0.15 2.53 7.61 -52.48 -0.40 2.13 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 41 H 0.14 3.52 7.34 -52.49 -0.39 3.14 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -33.75 361.50 -7.38 -41.13 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.40 Total: 7.15 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -1.03 Total: 10.41 kcal Atomic # 7 Polarization: -30.41 SS G_CDS: 0.47 Total: -29.94 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.83 Total: -44.03 kcal Atomic # 14 Polarization: 14.87 SS G_CDS: -5.04 Total: 9.83 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.75 -7.38 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.347 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds