Wall clock time and date at job start Tue Mar 31 2020 14:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47023 * 2 1 4 4 C 1.53001 * 109.47023 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46928 * 180.02562 * 4 3 2 6 6 C 1.32902 * 119.99866 * 85.10248 * 5 4 3 7 7 H 1.08000 * 120.00467 * 5.23272 * 6 5 4 8 8 C 1.46799 * 120.00077 * 185.23226 * 6 5 4 9 9 N 1.29320 * 120.00205 * 353.07799 * 8 6 5 10 10 Si 1.86799 * 120.00335 * 173.08220 * 8 6 5 11 11 H 1.48503 * 109.47306 * 89.99512 * 10 8 6 12 12 H 1.48493 * 109.47315 * 210.00004 * 10 8 6 13 13 H 1.48502 * 109.47049 * 330.00110 * 10 8 6 14 14 C 1.38622 * 119.99922 * 265.09630 * 5 4 3 15 15 N 1.32367 * 119.80717 * 90.33983 * 14 5 4 16 16 C 1.31792 * 121.79697 * 179.71152 * 15 14 5 17 17 C 1.38472 * 121.20381 * 0.56340 * 16 15 14 18 18 N 1.48015 * 120.25855 * 179.75004 * 17 16 15 19 19 O 1.31701 * 119.99963 * 179.97438 * 18 17 16 20 20 O 1.31700 * 120.00134 * 359.97438 * 18 17 16 21 21 C 1.38359 * 119.48287 * 359.72063 * 17 16 15 22 22 C 1.39992 * 118.34716 * 0.02562 * 21 17 16 23 23 C 1.47490 * 120.60596 * 180.02562 * 22 21 17 24 24 O 1.21493 * 119.99746 * 185.12947 * 23 22 21 25 25 O 1.34740 * 119.99960 * 5.12736 * 23 22 21 26 26 C 1.45198 * 117.00051 * 179.97438 * 25 23 22 27 27 H 1.09002 * 109.47100 * 59.99249 * 1 2 3 28 28 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46773 * 299.99879 * 1 2 3 30 30 H 1.09003 * 109.46956 * 240.00848 * 2 1 3 31 31 H 1.08990 * 109.47272 * 120.00059 * 2 1 3 32 32 H 1.09003 * 109.46562 * 60.00607 * 3 2 1 33 33 H 1.08992 * 109.47383 * 300.00629 * 3 2 1 34 34 H 1.09001 * 109.47543 * 300.00453 * 4 3 2 35 35 H 1.08999 * 109.46773 * 60.00121 * 4 3 2 36 36 H 0.96996 * 120.00390 * 180.02562 * 9 8 6 37 37 H 1.07997 * 119.40278 * 180.26680 * 16 15 14 38 38 H 1.07994 * 120.83119 * 180.02562 * 21 17 16 39 39 H 1.09003 * 109.47086 * 179.97438 * 26 25 23 40 40 H 1.08991 * 109.47303 * 300.00081 * 26 25 23 41 41 H 1.08999 * 109.47027 * 60.00695 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1876 3.4823 1.1471 7 1 4.0142 2.9741 2.0841 8 6 4.5662 4.9006 1.1406 9 7 4.9040 5.4747 0.0321 10 14 4.5603 5.8763 2.7335 11 1 5.8945 5.7793 3.3784 12 1 4.2543 7.2997 2.4410 13 1 3.5276 5.3256 3.6475 14 6 4.3856 3.4437 -1.1959 15 7 3.4636 4.1251 -1.8576 16 6 3.7331 4.7343 -2.9948 17 6 4.9975 4.6783 -3.5567 18 7 5.2756 5.3658 -4.8376 19 8 6.4801 5.3096 -5.3672 20 8 4.3185 6.0336 -5.4479 21 6 5.9990 3.9753 -2.9109 22 6 5.6919 3.3403 -1.7017 23 6 6.7217 2.5779 -0.9712 24 8 6.4216 1.9543 0.0274 25 8 7.9952 2.5730 -1.4113 26 6 8.9554 1.8015 -0.6424 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8898 34 1 3.9338 0.9285 0.8891 35 1 3.9329 0.9289 -0.8909 36 1 5.1545 6.4117 0.0278 37 1 2.9523 5.2832 -3.5002 38 1 6.9930 3.9177 -3.3293 39 1 9.9394 1.8821 -1.1043 40 1 8.9991 2.1871 0.3761 41 1 8.6485 0.7558 -0.6223 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:28 Heat of formation + Delta-G solvation = 4.933102 kcal Electronic energy + Delta-G solvation = -28545.777927 eV Core-core repulsion = 24431.931154 eV Total energy + Delta-G solvation = -4113.846773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -40.20324 -38.95702 -37.67916 -36.40450 -35.68266 -34.81728 -33.01900 -32.76775 -31.70938 -30.26514 -28.81953 -27.39569 -25.92708 -24.68312 -23.72923 -22.81596 -21.47936 -20.94505 -20.30874 -18.86037 -17.62123 -16.95682 -16.43542 -16.27012 -15.85476 -15.74866 -15.54300 -15.21528 -15.00847 -14.56004 -14.36138 -13.89663 -13.54090 -13.06398 -12.93355 -12.84904 -12.52538 -12.37366 -12.17232 -12.11054 -11.90255 -11.73314 -11.57324 -11.33321 -11.12952 -11.00210 -10.83433 -10.43368 -10.35492 -10.19979 -10.06866 -9.73937 -9.56030 -9.30304 -9.18227 -8.96874 -8.44515 -8.27107 -7.31221 -3.70071 0.27933 1.50572 2.38179 2.65451 2.66832 2.75051 2.84607 3.24421 3.30803 3.40323 3.92481 3.97690 4.62301 5.03272 5.05185 5.20106 5.33777 5.37045 5.39726 5.41643 5.64950 5.70043 5.72239 5.75845 5.81440 5.87991 5.89643 5.93824 6.01036 6.10876 6.21148 6.22885 6.28111 6.40504 6.55425 6.57436 6.84426 6.95621 7.07247 7.37853 7.62557 8.23235 8.43667 8.49187 8.58415 9.05272 9.41396 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008331 B = 0.005711 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3360.326149 B = 4901.568279 C = 5410.856112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.135 4.135 4 C 0.125 3.875 5 N -0.406 5.406 6 C -0.075 4.075 7 H 0.132 0.868 8 C -0.032 4.032 9 N -0.712 5.712 10 Si 0.946 3.054 11 H -0.267 1.267 12 H -0.268 1.268 13 H -0.256 1.256 14 C 0.324 3.676 15 N -0.455 5.455 16 C 0.177 3.823 17 C -0.131 4.131 18 N 0.042 4.958 19 O -0.332 6.332 20 O -0.324 6.324 21 C 0.041 3.959 22 C -0.166 4.166 23 C 0.514 3.486 24 O -0.507 6.507 25 O -0.365 6.365 26 C 0.042 3.958 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.305 0.695 37 H 0.152 0.848 38 H 0.140 0.860 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 -8.706 9.192 12.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.173 4.173 4 C 0.001 3.999 5 N -0.095 5.095 6 C -0.213 4.213 7 H 0.149 0.851 8 C -0.251 4.251 9 N -0.341 5.341 10 Si 0.769 3.231 11 H -0.192 1.192 12 H -0.193 1.193 13 H -0.180 1.180 14 C 0.089 3.911 15 N -0.168 5.168 16 C -0.004 4.004 17 C -0.238 4.238 18 N 0.452 4.548 19 O -0.478 6.478 20 O -0.472 6.472 21 C 0.014 3.986 22 C -0.175 4.175 23 C 0.360 3.640 24 O -0.396 6.396 25 O -0.282 6.282 26 C -0.052 4.052 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.169 0.831 38 H 0.158 0.842 39 H 0.112 0.888 40 H 0.076 0.924 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.204 -8.923 10.070 13.634 hybrid contribution 1.239 0.770 -0.021 1.458 sum -0.965 -8.153 10.050 12.977 Atomic orbital electron populations 1.21744 0.95876 1.01150 1.01956 1.21443 0.95841 0.96745 1.01799 1.22067 0.95281 0.96512 1.03464 1.21607 0.93287 0.82290 1.02674 1.41288 1.55415 1.09924 1.02849 1.22492 1.18866 0.92938 0.87016 0.85070 1.27260 1.00066 0.97191 1.00582 1.68489 1.23962 1.12881 1.28805 0.85517 0.79953 0.79111 0.78556 1.19220 1.19265 1.18014 1.16430 0.88371 0.96729 0.89601 1.67363 1.34652 1.08942 1.05884 1.21692 0.92785 0.94029 0.91919 1.20399 0.99071 1.14392 0.89972 1.49602 1.01403 1.00999 1.02759 1.96088 1.04905 1.74831 1.71961 1.96082 1.37182 1.47600 1.66318 1.21010 0.98202 0.88667 0.90677 1.19002 0.91656 1.08834 0.97994 1.20976 0.81116 0.78983 0.82899 1.90750 1.81494 1.42279 1.25104 1.86591 1.19634 1.67321 1.54680 1.23080 0.90753 0.95222 0.96179 0.92656 0.93078 0.92815 0.92120 0.92146 0.91533 0.90882 0.90889 0.91377 0.87963 0.83124 0.84203 0.88820 0.92390 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 71. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.12 -1.32 5.93 -26.73 -0.16 -1.48 16 3 C -0.13 -1.85 5.50 -26.73 -0.15 -1.99 16 4 C 0.12 1.97 4.68 -4.04 -0.02 1.95 16 5 N -0.41 -7.75 1.19 -113.23 -0.13 -7.88 16 6 C -0.08 -1.42 9.20 -13.63 -0.13 -1.54 16 7 H 0.13 2.13 7.94 -52.49 -0.42 1.71 16 8 C -0.03 -0.62 5.61 -15.15 -0.08 -0.71 16 9 N -0.71 -15.27 9.86 56.00 0.55 -14.72 16 10 Si 0.95 15.03 29.65 -169.99 -5.04 9.99 16 11 H -0.27 -4.33 7.11 56.52 0.40 -3.93 16 12 H -0.27 -4.43 7.11 56.52 0.40 -4.03 16 13 H -0.26 -3.85 7.11 56.52 0.40 -3.45 16 14 C 0.32 6.87 3.52 -154.91 -0.55 6.33 16 15 N -0.45 -9.94 9.82 -12.13 -0.12 -10.06 16 16 C 0.18 3.93 10.73 -17.48 -0.19 3.74 16 17 C -0.13 -3.08 6.90 -79.82 -0.55 -3.63 16 18 N 0.04 1.10 4.98 34.03 0.17 1.27 16 19 O -0.33 -9.00 19.21 -31.57 -0.61 -9.61 16 20 O -0.32 -8.70 19.16 -31.57 -0.60 -9.30 16 21 C 0.04 0.90 9.25 -38.88 -0.36 0.54 16 22 C -0.17 -3.56 5.22 -104.63 -0.55 -4.10 16 23 C 0.51 10.39 7.89 34.50 0.27 10.66 16 24 O -0.51 -10.33 13.56 -19.26 -0.26 -10.59 16 25 O -0.36 -6.63 9.90 -40.60 -0.40 -7.04 16 26 C 0.04 0.56 10.57 101.05 1.07 1.63 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 35 H 0.07 1.11 8.01 -51.93 -0.42 0.69 16 36 H 0.31 6.30 8.26 -40.82 -0.34 5.96 16 37 H 0.15 3.19 7.57 -52.49 -0.40 2.79 16 38 H 0.14 3.03 7.30 -52.49 -0.38 2.64 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -28.71 362.12 -7.40 -36.11 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.39 Total: 6.11 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -1.02 Total: 10.27 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.47 Total: -31.39 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -1.87 Total: -36.54 kcal Atomic # 14 Polarization: 15.03 SS G_CDS: -5.04 Total: 9.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.71 -7.40 -36.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.043 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds