Wall clock time and date at job start Tue Mar 31 2020 14:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47023 * 2 1 4 4 C 1.53001 * 109.47023 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46928 * 180.02562 * 4 3 2 6 6 C 1.32902 * 119.99866 * 85.10248 * 5 4 3 7 7 H 1.08000 * 120.00467 * 5.23272 * 6 5 4 8 8 C 1.46799 * 120.00077 * 185.23226 * 6 5 4 9 9 N 1.29320 * 120.00205 * 353.07799 * 8 6 5 10 10 Si 1.86799 * 120.00335 * 173.08220 * 8 6 5 11 11 H 1.48503 * 109.47306 * 89.99512 * 10 8 6 12 12 H 1.48493 * 109.47315 * 210.00004 * 10 8 6 13 13 H 1.48502 * 109.47049 * 330.00110 * 10 8 6 14 14 C 1.38622 * 119.99922 * 265.09630 * 5 4 3 15 15 N 1.32367 * 119.80717 * 90.33983 * 14 5 4 16 16 C 1.31792 * 121.79697 * 179.71152 * 15 14 5 17 17 C 1.38472 * 121.20381 * 0.56340 * 16 15 14 18 18 N 1.48015 * 120.25855 * 179.75004 * 17 16 15 19 19 O 1.31701 * 119.99963 * 179.97438 * 18 17 16 20 20 O 1.31700 * 120.00134 * 359.97438 * 18 17 16 21 21 C 1.38359 * 119.48287 * 359.72063 * 17 16 15 22 22 C 1.39992 * 118.34716 * 0.02562 * 21 17 16 23 23 C 1.47490 * 120.60596 * 180.02562 * 22 21 17 24 24 O 1.21493 * 119.99746 * 185.12947 * 23 22 21 25 25 O 1.34740 * 119.99960 * 5.12736 * 23 22 21 26 26 C 1.45198 * 117.00051 * 179.97438 * 25 23 22 27 27 H 1.09002 * 109.47100 * 59.99249 * 1 2 3 28 28 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46773 * 299.99879 * 1 2 3 30 30 H 1.09003 * 109.46956 * 240.00848 * 2 1 3 31 31 H 1.08990 * 109.47272 * 120.00059 * 2 1 3 32 32 H 1.09003 * 109.46562 * 60.00607 * 3 2 1 33 33 H 1.08992 * 109.47383 * 300.00629 * 3 2 1 34 34 H 1.09001 * 109.47543 * 300.00453 * 4 3 2 35 35 H 1.08999 * 109.46773 * 60.00121 * 4 3 2 36 36 H 0.96996 * 120.00390 * 180.02562 * 9 8 6 37 37 H 1.07997 * 119.40278 * 180.26680 * 16 15 14 38 38 H 1.07994 * 120.83119 * 180.02562 * 21 17 16 39 39 H 1.09003 * 109.47086 * 179.97438 * 26 25 23 40 40 H 1.08991 * 109.47303 * 300.00081 * 26 25 23 41 41 H 1.08999 * 109.47027 * 60.00695 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1876 3.4823 1.1471 7 1 4.0142 2.9741 2.0841 8 6 4.5662 4.9006 1.1406 9 7 4.9040 5.4747 0.0321 10 14 4.5603 5.8763 2.7335 11 1 5.8945 5.7793 3.3784 12 1 4.2543 7.2997 2.4410 13 1 3.5276 5.3256 3.6475 14 6 4.3856 3.4437 -1.1959 15 7 3.4636 4.1251 -1.8576 16 6 3.7331 4.7343 -2.9948 17 6 4.9975 4.6783 -3.5567 18 7 5.2756 5.3658 -4.8376 19 8 6.4801 5.3096 -5.3672 20 8 4.3185 6.0336 -5.4479 21 6 5.9990 3.9753 -2.9109 22 6 5.6919 3.3403 -1.7017 23 6 6.7217 2.5779 -0.9712 24 8 6.4216 1.9543 0.0274 25 8 7.9952 2.5730 -1.4113 26 6 8.9554 1.8015 -0.6424 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8898 34 1 3.9338 0.9285 0.8891 35 1 3.9329 0.9289 -0.8909 36 1 5.1545 6.4117 0.0278 37 1 2.9523 5.2832 -3.5002 38 1 6.9930 3.9177 -3.3293 39 1 9.9394 1.8821 -1.1043 40 1 8.9991 2.1871 0.3761 41 1 8.6485 0.7558 -0.6223 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:26 Heat of formation + Delta-G solvation = -32.525693 kcal Electronic energy + Delta-G solvation = -28547.402262 eV Core-core repulsion = 24431.931154 eV Total energy + Delta-G solvation = -4115.471108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.27871 -40.92163 -39.25210 -37.44466 -36.87480 -36.59153 -35.39606 -33.34997 -32.52468 -31.55451 -30.73930 -28.78377 -27.83865 -26.12848 -25.13870 -24.25891 -23.46269 -22.16694 -21.95859 -20.76390 -18.86635 -18.77443 -18.42657 -18.14518 -17.38209 -17.26723 -16.69888 -16.66786 -16.26219 -16.02076 -15.35929 -15.02182 -14.98015 -14.64013 -14.36945 -14.33957 -14.14208 -14.12315 -13.82415 -13.55381 -13.40000 -13.34776 -12.91693 -12.81289 -12.30089 -12.19824 -11.95504 -11.88357 -11.83755 -11.77529 -11.45026 -11.39779 -10.57046 -10.42359 -10.40336 -10.13390 -10.00279 -9.79391 -9.52057 -6.02115 -1.04155 -0.20815 0.80284 0.95740 1.09524 1.29297 1.61236 1.63315 1.75910 1.95407 2.03419 2.68709 2.81823 3.03414 3.44400 3.69027 3.77638 3.80607 4.13148 4.18052 4.22214 4.27793 4.34788 4.38163 4.38817 4.50916 4.59807 4.66143 4.68188 4.81347 4.86919 4.98227 5.04954 5.08769 5.21442 5.27206 5.33416 5.34353 5.44181 5.52603 5.84977 6.18081 6.49645 6.61251 7.32352 7.66508 8.56818 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008331 B = 0.005711 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3360.326149 B = 4901.568279 C = 5410.856112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.132 4.132 4 C 0.062 3.938 5 N -0.278 5.278 6 C 0.335 3.665 7 H 0.297 0.703 8 C -0.090 4.090 9 N -0.572 5.572 10 Si 1.040 2.960 11 H -0.235 1.235 12 H -0.280 1.280 13 H -0.167 1.167 14 C 0.075 3.925 15 N -0.375 5.375 16 C -0.001 4.001 17 C 0.012 3.988 18 N -0.091 5.091 19 O -0.688 6.688 20 O -0.681 6.681 21 C -0.097 4.097 22 C -0.078 4.078 23 C 0.529 3.471 24 O -0.512 6.512 25 O -0.375 6.375 26 C 0.030 3.970 27 H 0.034 0.966 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.170 0.830 35 H 0.082 0.918 36 H 0.354 0.646 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.598 -17.451 42.074 45.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.170 4.170 4 C -0.056 4.056 5 N 0.066 4.934 6 C 0.147 3.853 7 H 0.312 0.688 8 C -0.328 4.328 9 N -0.192 5.192 10 Si 0.848 3.152 11 H -0.158 1.158 12 H -0.204 1.204 13 H -0.087 1.087 14 C -0.153 4.153 15 N -0.086 5.086 16 C -0.177 4.177 17 C -0.124 4.124 18 N 0.198 4.802 19 O -0.753 6.753 20 O -0.747 6.747 21 C -0.124 4.124 22 C -0.086 4.086 23 C 0.376 3.624 24 O -0.405 6.405 25 O -0.291 6.291 26 C -0.063 4.063 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.062 0.938 34 H 0.188 0.812 35 H 0.101 0.899 36 H 0.173 0.827 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.099 0.901 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.219 -17.418 41.384 45.329 hybrid contribution 1.482 1.356 -2.644 3.321 sum -4.737 -16.061 38.740 42.205 Atomic orbital electron populations 1.21773 0.95561 1.02081 1.01847 1.21424 0.96118 0.94448 1.03388 1.22079 0.90951 0.99618 1.04325 1.23385 0.96611 0.76994 1.08657 1.44205 1.31020 1.13227 1.04953 1.28643 0.72792 0.90955 0.92874 0.68807 1.30847 0.97621 0.97590 1.06766 1.69287 0.99401 1.18661 1.31802 0.84376 0.84509 0.76437 0.69913 1.15796 1.20442 1.08665 1.15943 0.89076 1.15565 0.94679 1.66363 1.32872 1.04279 1.05085 1.20043 0.93315 1.09024 0.95367 1.20405 0.97827 1.05907 0.88230 1.47399 1.00236 1.23495 1.09092 1.95510 1.09937 1.90792 1.79038 1.95506 1.40592 1.65018 1.73564 1.20278 0.97234 0.99119 0.95760 1.18778 0.92022 1.02715 0.95061 1.20810 0.81882 0.77711 0.82045 1.90579 1.82036 1.42743 1.25120 1.86705 1.19451 1.67264 1.55666 1.23622 0.90563 0.95454 0.96630 0.94682 0.92068 0.91085 0.93157 0.88193 0.87133 0.93782 0.81221 0.89911 0.82687 0.87637 0.88766 0.86619 0.90150 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.91 71.98 0.71 -0.64 16 2 C -0.12 -0.80 5.93 30.60 0.18 -0.61 16 3 C -0.13 -1.13 5.50 30.60 0.17 -0.96 16 4 C 0.06 0.59 4.68 86.38 0.40 0.99 16 5 N -0.28 -4.62 1.19 -512.14 -0.61 -5.23 16 6 C 0.33 1.68 9.20 86.77 0.80 2.48 16 7 H 0.30 -4.32 7.94 -2.91 -0.02 -4.34 16 8 C -0.09 -1.03 5.61 87.30 0.49 -0.54 16 9 N -0.57 -15.02 9.86 23.26 0.23 -14.79 16 10 Si 1.04 2.27 29.65 68.60 2.03 4.30 16 11 H -0.23 -0.66 7.11 99.48 0.71 0.04 16 12 H -0.28 -2.66 7.11 99.48 0.71 -1.96 16 13 H -0.17 1.04 7.11 99.48 0.71 1.75 16 14 C 0.08 2.61 3.52 133.53 0.47 3.08 16 15 N -0.37 -16.59 9.82 -192.28 -1.89 -18.48 16 16 C 0.00 -0.05 10.73 84.75 0.91 0.86 16 17 C 0.01 0.83 6.90 36.46 0.25 1.08 16 18 N -0.09 -8.24 4.98 -46.26 -0.23 -8.47 16 19 O -0.69 -66.45 19.21 3.51 0.07 -66.39 16 20 O -0.68 -65.71 19.16 3.51 0.07 -65.64 16 21 C -0.10 -5.82 9.25 22.72 0.21 -5.61 16 22 C -0.08 -3.30 5.22 -19.87 -0.10 -3.41 16 23 C 0.53 17.36 7.89 70.26 0.55 17.91 16 24 O -0.51 -11.99 13.56 19.86 0.27 -11.72 16 25 O -0.37 -12.72 9.90 -56.51 -0.56 -13.28 16 26 C 0.03 0.60 10.57 113.37 1.20 1.79 16 27 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.17 -0.36 8.06 -2.39 -0.02 -0.38 16 35 H 0.08 1.38 8.01 -2.39 -0.02 1.36 16 36 H 0.35 9.05 8.26 -92.71 -0.77 8.29 16 37 H 0.11 7.07 7.57 -2.91 -0.02 7.05 16 38 H 0.09 6.18 7.30 -2.91 -0.02 6.16 16 39 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -164.85 362.12 6.68 -158.17 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 1.06 Total: 25.11 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 6.25 Total: 16.43 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -2.50 Total: -46.97 kcal Atomic # 8 Polarization: -156.88 SS G_CDS: -0.16 Total: -157.03 kcal Atomic # 14 Polarization: 2.27 SS G_CDS: 2.03 Total: 4.30 kcal Total: -164.85 6.68 -158.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.640 kcal (2) G-P(sol) polarization free energy of solvation -164.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -158.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds