Wall clock time and date at job start Tue Mar 31 2020 14:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47393 * 2 1 4 4 C 1.52995 * 109.47393 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47494 * 180.02562 * 4 3 2 6 6 C 1.32781 * 120.00123 * 85.14248 * 5 4 3 7 7 H 1.08000 * 119.99932 * 4.99837 * 6 5 4 8 8 C 1.46821 * 119.99742 * 184.99994 * 6 5 4 9 9 N 1.29312 * 120.00234 * 352.88683 * 8 6 5 10 10 Si 1.86795 * 119.99420 * 173.15564 * 8 6 5 11 11 H 1.48504 * 109.47070 * 60.00319 * 10 8 6 12 12 H 1.48505 * 109.46992 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47784 * 299.99941 * 10 8 6 14 14 C 1.39052 * 119.99653 * 265.14861 * 5 4 3 15 15 N 1.32088 * 119.63648 * 90.69245 * 14 5 4 16 16 C 1.32710 * 121.55304 * 179.97438 * 15 14 5 17 17 C 1.48077 * 119.67806 * 179.97438 * 16 15 14 18 18 O 1.21429 * 119.99960 * 179.97438 * 17 16 15 19 19 O 1.34684 * 120.00141 * 0.02562 * 17 16 15 20 20 C 1.45195 * 117.00221 * 179.97438 * 19 17 16 21 21 C 1.39357 * 120.64337 * 359.97438 * 16 15 14 22 22 C 1.38711 * 119.20979 * 0.02615 * 21 16 15 23 23 C 1.38394 * 118.56902 * 359.72503 * 22 21 16 24 24 N 1.48019 * 120.35468 * 180.28650 * 23 22 21 25 25 O 1.31697 * 120.00162 * 4.91214 * 24 23 22 26 26 O 1.31703 * 119.99476 * 184.90843 * 24 23 22 27 27 H 1.09001 * 109.46917 * 299.99729 * 1 2 3 28 28 H 1.09005 * 109.47215 * 59.99747 * 1 2 3 29 29 H 1.08994 * 109.47541 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46917 * 240.00271 * 2 1 3 31 31 H 1.08997 * 109.47445 * 120.00843 * 2 1 3 32 32 H 1.09001 * 109.46868 * 60.00240 * 3 2 1 33 33 H 1.09005 * 109.47628 * 300.00517 * 3 2 1 34 34 H 1.09001 * 109.46917 * 60.00271 * 4 3 2 35 35 H 1.08997 * 109.47504 * 300.00289 * 4 3 2 36 36 H 0.96993 * 119.99745 * 180.02562 * 9 8 6 37 37 H 1.08994 * 109.47157 * 179.97438 * 20 19 17 38 38 H 1.09001 * 109.47282 * 300.00206 * 20 19 17 39 39 H 1.09006 * 109.47322 * 59.99469 * 20 19 17 40 40 H 1.07994 * 120.39260 * 180.02562 * 21 16 15 41 41 H 1.08006 * 120.71901 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.1884 3.4814 1.1461 7 1 4.0118 2.9739 2.0829 8 6 4.5722 4.8985 1.1397 9 7 4.9170 5.4700 0.0322 10 14 4.5696 5.8739 2.7328 11 1 5.5128 5.2510 3.6960 12 1 4.9933 7.2706 2.4587 13 1 3.2015 5.8753 3.3102 14 6 4.3857 3.4458 -1.1997 15 7 3.4644 4.1310 -1.8528 16 6 3.7351 4.7401 -3.0003 17 6 2.6704 5.4967 -3.6979 18 8 2.9118 6.0566 -4.7480 19 8 1.4344 5.5647 -3.1671 20 6 0.4409 6.3240 -3.9050 21 6 5.0118 4.6746 -3.5553 22 6 6.0017 3.9627 -2.8940 23 6 5.6848 3.3446 -1.6970 24 7 6.7124 2.5801 -0.9550 25 8 7.9582 2.5653 -1.3818 26 8 6.3807 1.9147 0.1322 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9285 0.8890 36 1 5.1709 6.4061 0.0281 37 1 -0.5079 6.2980 -3.3692 38 1 0.7739 7.3571 -4.0053 39 1 0.3109 5.8866 -4.8950 40 1 5.2277 5.1721 -4.4892 41 1 6.9993 3.8956 -3.3023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:20 Heat of formation + Delta-G solvation = -3.275000 kcal Electronic energy + Delta-G solvation = -28728.935670 eV Core-core repulsion = 24614.732967 eV Total energy + Delta-G solvation = -4114.202703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -39.98590 -39.32954 -37.25515 -35.76547 -35.54195 -35.20120 -33.69904 -31.58497 -31.02639 -30.04591 -29.10693 -27.47120 -25.94003 -25.07191 -23.53118 -22.01981 -21.78730 -21.02653 -20.33555 -18.97044 -17.28060 -16.91899 -16.55591 -16.14725 -15.80142 -15.68957 -15.56082 -15.22806 -14.93281 -14.45643 -13.81023 -13.45086 -13.37977 -13.17593 -12.90615 -12.89809 -12.70064 -12.61097 -12.21443 -11.97589 -11.86429 -11.75224 -11.65898 -11.52136 -11.28457 -11.16809 -11.00778 -10.62562 -10.46738 -10.25205 -9.97843 -9.52489 -8.82314 -8.79271 -8.59137 -8.54742 -8.38920 -8.23067 -7.59106 -3.94325 0.44699 2.16620 2.26279 2.38845 2.46695 2.50595 2.91434 3.32499 3.37810 3.47786 3.50267 3.89125 4.82227 4.91321 4.97699 5.01407 5.13184 5.30283 5.40723 5.44924 5.47587 5.53375 5.64187 5.74651 5.79520 5.84990 5.85168 6.00670 6.08731 6.17522 6.26385 6.30241 6.37492 6.46048 6.52445 6.60488 6.92438 7.16545 7.35864 7.43368 7.58879 7.93936 8.46458 8.55770 8.68488 9.05120 9.70593 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007802 B = 0.006467 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3588.121959 B = 4328.371042 C = 5083.799974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.138 4.138 4 C 0.104 3.896 5 N -0.340 5.340 6 C 0.106 3.894 7 H 0.163 0.837 8 C -0.061 4.061 9 N -0.607 5.607 10 Si 0.971 3.029 11 H -0.246 1.246 12 H -0.257 1.257 13 H -0.247 1.247 14 C 0.269 3.731 15 N -0.372 5.372 16 C -0.036 4.036 17 C 0.530 3.470 18 O -0.542 6.542 19 O -0.347 6.347 20 C 0.037 3.963 21 C -0.107 4.107 22 C -0.091 4.091 23 C -0.015 4.015 24 N 0.022 4.978 25 O -0.475 6.475 26 O -0.434 6.434 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.325 0.675 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.122 0.878 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.494 1.010 5.707 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.177 4.177 4 C -0.018 4.018 5 N -0.023 5.023 6 C -0.052 4.052 7 H 0.180 0.820 8 C -0.290 4.290 9 N -0.237 5.237 10 Si 0.788 3.212 11 H -0.169 1.169 12 H -0.180 1.180 13 H -0.171 1.171 14 C 0.026 3.974 15 N -0.086 5.086 16 C -0.179 4.179 17 C 0.379 3.621 18 O -0.433 6.433 19 O -0.263 6.263 20 C -0.058 4.058 21 C -0.132 4.132 22 C -0.118 4.118 23 C -0.139 4.139 24 N 0.373 4.627 25 O -0.576 6.576 26 O -0.542 6.542 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.142 0.858 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.140 0.860 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.935 1.080 5.507 15.022 hybrid contribution 1.302 0.554 0.003 1.415 sum -12.632 1.634 5.510 13.878 Atomic orbital electron populations 1.21742 0.95756 1.01280 1.01934 1.21446 0.95915 0.96344 1.02235 1.22108 0.94494 0.97339 1.03739 1.22212 0.93645 0.80859 1.05074 1.42498 1.44116 1.11455 1.04254 1.24286 1.00954 0.90083 0.89873 0.81983 1.28192 1.01135 0.96821 1.02823 1.68972 1.10316 1.16220 1.28154 0.85173 0.81297 0.78570 0.76123 1.16942 1.18007 1.17076 1.16085 0.87692 1.04935 0.88675 1.66566 1.33267 1.03261 1.05536 1.18237 0.91703 1.12381 0.95557 1.20976 0.81079 0.77359 0.82655 1.90715 1.82388 1.46223 1.23989 1.86692 1.20659 1.67675 1.51282 1.23087 0.90363 0.95601 0.96744 1.20985 0.91446 1.00484 1.00283 1.20265 0.99292 0.99317 0.92975 1.20014 0.89059 1.08820 0.96004 1.48454 1.01560 1.08765 1.03884 1.95946 1.00557 1.82860 1.78231 1.95809 1.88006 1.53066 1.17271 0.92786 0.92643 0.92975 0.91831 0.91845 0.91289 0.90422 0.89455 0.88764 0.85843 0.89021 0.92676 0.92634 0.86000 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.12 -1.30 5.93 -26.73 -0.16 -1.46 16 3 C -0.14 -1.79 5.50 -26.73 -0.15 -1.94 16 4 C 0.10 1.69 4.53 -4.04 -0.02 1.67 16 5 N -0.34 -6.65 1.18 -113.50 -0.13 -6.78 16 6 C 0.11 1.83 9.03 -13.67 -0.12 1.70 16 7 H 0.16 2.03 7.94 -52.49 -0.42 1.61 16 8 C -0.06 -1.06 5.61 -15.14 -0.08 -1.15 16 9 N -0.61 -12.33 9.82 56.00 0.55 -11.78 16 10 Si 0.97 12.45 29.65 -169.99 -5.04 7.41 16 11 H -0.25 -3.21 7.11 56.52 0.40 -2.80 16 12 H -0.26 -3.39 7.11 56.52 0.40 -2.99 16 13 H -0.25 -2.85 7.11 56.52 0.40 -2.45 16 14 C 0.27 6.16 3.54 -155.11 -0.55 5.61 16 15 N -0.37 -8.30 9.59 -8.97 -0.09 -8.38 16 16 C -0.04 -0.81 6.75 -83.03 -0.56 -1.37 16 17 C 0.53 11.27 7.95 34.77 0.28 11.55 16 18 O -0.54 -12.03 16.11 -19.21 -0.31 -12.34 16 19 O -0.35 -6.54 10.38 -40.45 -0.42 -6.96 16 20 C 0.04 0.50 10.56 101.05 1.07 1.57 16 21 C -0.11 -2.43 9.63 -38.99 -0.38 -2.81 16 22 C -0.09 -2.26 9.68 -39.35 -0.38 -2.64 16 23 C -0.01 -0.38 6.20 -79.43 -0.49 -0.87 16 24 N 0.02 0.65 4.98 34.21 0.17 0.82 16 25 O -0.48 -15.77 19.23 -31.57 -0.61 -16.38 16 26 O -0.43 -12.63 16.22 -31.57 -0.51 -13.14 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.59 8.01 -51.93 -0.42 1.18 16 35 H 0.09 1.38 8.06 -51.93 -0.42 0.96 16 36 H 0.33 5.97 8.26 -40.82 -0.34 5.64 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.12 2.56 7.63 -52.49 -0.40 2.16 16 41 H 0.13 3.11 7.67 -52.48 -0.40 2.71 16 LS Contribution 362.28 15.07 5.46 5.46 Total: -1.00 -36.77 362.28 -7.52 -44.29 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.41 Total: 8.96 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -1.18 Total: 8.82 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.50 Total: -26.12 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -1.85 Total: -48.82 kcal Atomic # 14 Polarization: 12.45 SS G_CDS: -5.04 Total: 7.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.77 -7.52 -44.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.018 kcal (2) G-P(sol) polarization free energy of solvation -36.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds