Wall clock time and date at job start Tue Mar 31 2020 14:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47393 * 2 1 4 4 C 1.52995 * 109.47393 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47494 * 180.02562 * 4 3 2 6 6 C 1.32781 * 120.00123 * 85.14248 * 5 4 3 7 7 H 1.08000 * 119.99932 * 4.99837 * 6 5 4 8 8 C 1.46821 * 119.99742 * 184.99994 * 6 5 4 9 9 N 1.29312 * 120.00234 * 352.88683 * 8 6 5 10 10 Si 1.86795 * 119.99420 * 173.15564 * 8 6 5 11 11 H 1.48504 * 109.47070 * 60.00319 * 10 8 6 12 12 H 1.48505 * 109.46992 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47784 * 299.99941 * 10 8 6 14 14 C 1.39052 * 119.99653 * 265.14861 * 5 4 3 15 15 N 1.32088 * 119.63648 * 90.69245 * 14 5 4 16 16 C 1.32710 * 121.55304 * 179.97438 * 15 14 5 17 17 C 1.48077 * 119.67806 * 179.97438 * 16 15 14 18 18 O 1.21429 * 119.99960 * 179.97438 * 17 16 15 19 19 O 1.34684 * 120.00141 * 0.02562 * 17 16 15 20 20 C 1.45195 * 117.00221 * 179.97438 * 19 17 16 21 21 C 1.39357 * 120.64337 * 359.97438 * 16 15 14 22 22 C 1.38711 * 119.20979 * 0.02615 * 21 16 15 23 23 C 1.38394 * 118.56902 * 359.72503 * 22 21 16 24 24 N 1.48019 * 120.35468 * 180.28650 * 23 22 21 25 25 O 1.31697 * 120.00162 * 4.91214 * 24 23 22 26 26 O 1.31703 * 119.99476 * 184.90843 * 24 23 22 27 27 H 1.09001 * 109.46917 * 299.99729 * 1 2 3 28 28 H 1.09005 * 109.47215 * 59.99747 * 1 2 3 29 29 H 1.08994 * 109.47541 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46917 * 240.00271 * 2 1 3 31 31 H 1.08997 * 109.47445 * 120.00843 * 2 1 3 32 32 H 1.09001 * 109.46868 * 60.00240 * 3 2 1 33 33 H 1.09005 * 109.47628 * 300.00517 * 3 2 1 34 34 H 1.09001 * 109.46917 * 60.00271 * 4 3 2 35 35 H 1.08997 * 109.47504 * 300.00289 * 4 3 2 36 36 H 0.96993 * 119.99745 * 180.02562 * 9 8 6 37 37 H 1.08994 * 109.47157 * 179.97438 * 20 19 17 38 38 H 1.09001 * 109.47282 * 300.00206 * 20 19 17 39 39 H 1.09006 * 109.47322 * 59.99469 * 20 19 17 40 40 H 1.07994 * 120.39260 * 180.02562 * 21 16 15 41 41 H 1.08006 * 120.71901 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.1884 3.4814 1.1461 7 1 4.0118 2.9739 2.0829 8 6 4.5722 4.8985 1.1397 9 7 4.9170 5.4700 0.0322 10 14 4.5696 5.8739 2.7328 11 1 5.5128 5.2510 3.6960 12 1 4.9933 7.2706 2.4587 13 1 3.2015 5.8753 3.3102 14 6 4.3857 3.4458 -1.1997 15 7 3.4644 4.1310 -1.8528 16 6 3.7351 4.7401 -3.0003 17 6 2.6704 5.4967 -3.6979 18 8 2.9118 6.0566 -4.7480 19 8 1.4344 5.5647 -3.1671 20 6 0.4409 6.3240 -3.9050 21 6 5.0118 4.6746 -3.5553 22 6 6.0017 3.9627 -2.8940 23 6 5.6848 3.3446 -1.6970 24 7 6.7124 2.5801 -0.9550 25 8 7.9582 2.5653 -1.3818 26 8 6.3807 1.9147 0.1322 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9285 0.8890 36 1 5.1709 6.4061 0.0281 37 1 -0.5079 6.2980 -3.3692 38 1 0.7739 7.3571 -4.0053 39 1 0.3109 5.8866 -4.8950 40 1 5.2277 5.1721 -4.4892 41 1 6.9993 3.8956 -3.3023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:18 Heat of formation + Delta-G solvation = -35.848101 kcal Electronic energy + Delta-G solvation = -28730.348146 eV Core-core repulsion = 24614.732967 eV Total energy + Delta-G solvation = -4115.615178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.89023 -40.95758 -38.99463 -37.14294 -36.89253 -36.83317 -35.43912 -32.99242 -32.54902 -31.64782 -30.75546 -28.70881 -27.77295 -26.55853 -25.02310 -23.83542 -23.39270 -22.19213 -21.93370 -20.71675 -18.93483 -18.77501 -18.37137 -17.63142 -17.31170 -17.09399 -17.04837 -16.71807 -16.28250 -15.99807 -15.15602 -14.94986 -14.84460 -14.57633 -14.39002 -14.24535 -14.15778 -14.08131 -13.69224 -13.53966 -13.39018 -13.30828 -12.86481 -12.74999 -12.36170 -12.25202 -11.97055 -11.80841 -11.60556 -11.55623 -11.47587 -11.34487 -10.58804 -10.49758 -10.32696 -10.19135 -10.11855 -9.82825 -9.44871 -6.08680 -0.97238 0.41687 0.69764 0.83487 1.10635 1.31176 1.59338 1.84846 1.87056 2.02439 2.07147 2.59100 2.75746 3.12835 3.39708 3.65638 3.74652 4.00454 4.11117 4.24425 4.35903 4.37976 4.40832 4.42733 4.45680 4.55363 4.62209 4.67631 4.74756 4.82378 4.93827 4.99477 5.05326 5.25698 5.29177 5.32471 5.40517 5.46188 5.50423 5.69487 5.81703 6.17473 6.54307 6.92197 7.33006 7.45108 8.44266 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007802 B = 0.006467 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3588.121959 B = 4328.371042 C = 5083.799974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.121 4.121 4 C 0.073 3.927 5 N -0.276 5.276 6 C 0.319 3.681 7 H 0.275 0.725 8 C -0.096 4.096 9 N -0.571 5.571 10 Si 1.050 2.950 11 H -0.231 1.231 12 H -0.260 1.260 13 H -0.180 1.180 14 C 0.174 3.826 15 N -0.337 5.337 16 C -0.139 4.139 17 C 0.540 3.460 18 O -0.572 6.572 19 O -0.356 6.356 20 C 0.030 3.970 21 C -0.046 4.046 22 C -0.194 4.194 23 C 0.029 3.971 24 N -0.045 5.045 25 O -0.671 6.671 26 O -0.614 6.614 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.138 0.862 36 H 0.355 0.645 37 H 0.133 0.867 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.119 0.881 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.312 4.023 15.047 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.159 4.159 4 C -0.046 4.046 5 N 0.068 4.932 6 C 0.131 3.869 7 H 0.291 0.709 8 C -0.333 4.333 9 N -0.190 5.190 10 Si 0.855 3.145 11 H -0.154 1.154 12 H -0.183 1.183 13 H -0.100 1.100 14 C -0.072 4.072 15 N -0.052 5.052 16 C -0.274 4.274 17 C 0.391 3.609 18 O -0.467 6.467 19 O -0.272 6.272 20 C -0.063 4.063 21 C -0.070 4.070 22 C -0.220 4.220 23 C -0.112 4.112 24 N 0.255 4.745 25 O -0.740 6.740 26 O -0.688 6.688 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.155 0.845 36 H 0.174 0.826 37 H 0.151 0.849 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.137 0.863 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.593 3.854 14.598 27.173 hybrid contribution 2.521 0.184 -1.487 2.933 sum -20.071 4.038 13.111 24.312 Atomic orbital electron populations 1.21721 0.94087 1.02332 1.02335 1.21445 0.97151 0.94210 1.02924 1.22065 0.88972 0.99979 1.04850 1.23090 0.97134 0.77605 1.06816 1.44178 1.30456 1.12815 1.05792 1.28190 0.74144 0.91937 0.92653 0.70917 1.31018 0.97358 0.97022 1.07861 1.69152 0.99490 1.17823 1.32544 0.84350 0.85240 0.75995 0.68873 1.15352 1.18347 1.10047 1.15892 0.88435 1.10544 0.92348 1.66201 1.31828 1.01388 1.05737 1.17848 0.91982 1.18757 0.98840 1.20572 0.81428 0.76980 0.81879 1.90676 1.82893 1.48195 1.24912 1.86609 1.20184 1.68420 1.51946 1.23456 0.90506 0.95087 0.97284 1.20993 0.91638 0.96010 0.98325 1.19811 0.98559 1.06859 0.96799 1.19748 0.87424 1.07213 0.96859 1.47515 1.00153 1.18496 1.08305 1.95692 1.05137 1.90518 1.82650 1.95438 1.88135 1.62706 1.22489 0.90913 0.93637 0.91870 0.93347 0.89413 0.86951 0.92310 0.91764 0.84456 0.82578 0.84924 0.92501 0.92673 0.86270 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.12 -1.85 5.93 30.59 0.18 -1.66 16 3 C -0.12 -2.23 5.50 30.59 0.17 -2.06 16 4 C 0.07 2.04 4.53 86.38 0.39 2.43 16 5 N -0.28 -9.46 1.18 -513.01 -0.60 -10.06 16 6 C 0.32 7.42 9.03 86.80 0.78 8.20 16 7 H 0.28 1.61 7.94 -2.91 -0.02 1.58 16 8 C -0.10 -2.35 5.61 87.31 0.49 -1.86 16 9 N -0.57 -19.99 9.82 23.26 0.23 -19.76 16 10 Si 1.05 11.98 29.65 68.60 2.03 14.02 16 11 H -0.23 -2.74 7.11 99.48 0.71 -2.03 16 12 H -0.26 -3.74 7.11 99.48 0.71 -3.03 16 13 H -0.18 -0.74 7.11 99.48 0.71 -0.04 16 14 C 0.17 8.05 3.54 133.22 0.47 8.52 16 15 N -0.34 -14.92 9.59 -182.29 -1.75 -16.66 16 16 C -0.14 -6.67 6.75 41.89 0.28 -6.39 16 17 C 0.54 23.68 7.95 70.43 0.56 24.24 16 18 O -0.57 -26.78 16.11 20.06 0.32 -26.46 16 19 O -0.36 -12.89 10.38 -55.93 -0.58 -13.47 16 20 C 0.03 0.76 10.56 113.37 1.20 1.96 16 21 C -0.05 -2.38 9.63 22.65 0.22 -2.16 16 22 C -0.19 -11.60 9.68 22.42 0.22 -11.38 16 23 C 0.03 1.71 6.20 36.71 0.23 1.93 16 24 N -0.05 -3.24 4.98 -45.66 -0.23 -3.47 16 25 O -0.67 -55.99 19.23 3.52 0.07 -55.92 16 26 O -0.61 -40.50 16.22 3.51 0.06 -40.45 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.06 2.41 8.01 -2.39 -0.02 2.39 16 35 H 0.14 3.01 8.06 -2.39 -0.02 2.99 16 36 H 0.35 10.81 8.26 -92.71 -0.77 10.04 16 37 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.12 5.88 7.63 -2.91 -0.02 5.86 16 41 H 0.08 5.43 7.67 -2.91 -0.02 5.41 16 Total: -1.00 -123.49 362.28 6.51 -116.98 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 1.05 Total: 34.65 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 5.90 Total: 20.60 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -2.35 Total: -49.96 kcal Atomic # 8 Polarization: -136.16 SS G_CDS: -0.13 Total: -136.29 kcal Atomic # 14 Polarization: 11.98 SS G_CDS: 2.03 Total: 14.02 kcal Total: -123.49 6.51 -116.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.137 kcal (2) G-P(sol) polarization free energy of solvation -123.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -116.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds