Wall clock time and date at job start Tue Mar 31 2020 14:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46843 * 2 1 4 4 C 1.52996 * 109.46974 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47450 * 180.02562 * 4 3 2 6 6 C 1.32770 * 119.99932 * 264.32820 * 5 4 3 7 7 H 1.07996 * 120.00451 * 127.51230 * 6 5 4 8 8 C 1.46814 * 119.99536 * 307.51719 * 6 5 4 9 9 N 1.29318 * 119.99562 * 173.09588 * 8 6 5 10 10 Si 1.86796 * 120.00393 * 353.09875 * 8 6 5 11 11 H 1.48497 * 109.47237 * 92.03991 * 10 8 6 12 12 H 1.48496 * 109.47002 * 212.04404 * 10 8 6 13 13 H 1.48503 * 109.46849 * 332.03804 * 10 8 6 14 14 C 1.39040 * 120.00445 * 84.32392 * 5 4 3 15 15 N 1.32393 * 119.63555 * 354.24560 * 14 5 4 16 16 C 1.31745 * 121.97414 * 180.31259 * 15 14 5 17 17 C 1.38204 * 121.00320 * 359.68688 * 16 15 14 18 18 C 1.39950 * 119.15825 * 0.02562 * 17 16 15 19 19 C 1.48050 * 120.89385 * 179.97438 * 18 17 16 20 20 O 1.21431 * 120.00308 * 180.02562 * 19 18 17 21 21 O 1.34672 * 120.00381 * 0.03006 * 19 18 17 22 22 C 1.45200 * 117.00272 * 180.02562 * 21 19 18 23 23 C 1.39079 * 119.63986 * 173.97738 * 14 5 4 24 24 N 1.48013 * 120.53630 * 0.02562 * 23 14 5 25 25 O 1.31698 * 120.00001 * 280.63075 * 24 23 14 26 26 O 1.31697 * 120.00073 * 100.35566 * 24 23 14 27 27 H 1.09000 * 109.47406 * 59.99902 * 1 2 3 28 28 H 1.09004 * 109.47304 * 180.02562 * 1 2 3 29 29 H 1.09012 * 109.47145 * 299.99997 * 1 2 3 30 30 H 1.08999 * 109.46933 * 240.00128 * 2 1 3 31 31 H 1.09001 * 109.46932 * 119.99492 * 2 1 3 32 32 H 1.09003 * 109.47754 * 59.99792 * 3 2 1 33 33 H 1.09002 * 109.47413 * 299.99725 * 3 2 1 34 34 H 1.09002 * 109.47833 * 59.99756 * 4 3 2 35 35 H 1.08999 * 109.47125 * 299.99429 * 4 3 2 36 36 H 0.97003 * 120.00304 * 179.97438 * 9 8 6 37 37 H 1.07990 * 119.50008 * 179.70280 * 16 15 14 38 38 H 1.07998 * 120.41982 * 180.02562 * 17 16 15 39 39 H 1.09003 * 109.46993 * 299.99362 * 22 21 19 40 40 H 1.08996 * 109.47068 * 59.99621 * 22 21 19 41 41 H 1.09000 * 109.46518 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3862 3.4124 -1.1440 7 1 3.9616 4.3722 -1.3987 8 6 5.3261 2.7584 -2.0629 9 7 5.5434 3.2638 -3.2333 10 14 6.2079 1.1964 -1.5417 11 1 5.4184 0.0149 -1.9728 12 1 7.5509 1.1518 -2.1737 13 1 6.3555 1.1809 -0.0641 14 6 4.1783 3.5182 1.1985 15 7 3.7429 2.9673 2.3208 16 6 3.8280 3.5863 3.4807 17 6 4.3869 4.8467 3.5756 18 6 4.8671 5.4686 2.4175 19 6 5.4725 6.8185 2.4748 20 8 5.8835 7.3432 1.4598 21 8 5.5676 7.4644 3.6526 22 6 6.1718 8.7846 3.6336 23 6 4.7595 4.7817 1.2061 24 7 5.2498 5.3915 -0.0503 25 8 6.4135 5.0280 -0.5484 26 8 4.5199 6.2937 -0.6731 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9330 0.9288 -0.8908 35 1 3.9336 0.9287 0.8891 36 1 6.1647 2.8320 -3.8403 37 1 3.4557 3.1013 4.3709 38 1 4.4523 5.3453 4.5313 39 1 7.1919 8.7119 3.2564 40 1 5.5907 9.4408 2.9857 41 1 6.1860 9.1922 4.6445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:23 Heat of formation + Delta-G solvation = -13.206312 kcal Electronic energy + Delta-G solvation = -28818.907247 eV Core-core repulsion = 24704.273890 eV Total energy + Delta-G solvation = -4114.633357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.27608 -41.25835 -38.97471 -38.70377 -37.73952 -35.77995 -34.86594 -34.60185 -34.02230 -31.98135 -30.00903 -29.14503 -27.74653 -26.34602 -25.69850 -24.33307 -23.21411 -22.14297 -22.02534 -20.35174 -19.11831 -18.92446 -18.63839 -18.48643 -17.73803 -17.64966 -17.47666 -16.62316 -16.14343 -15.99604 -15.72163 -15.55238 -14.93701 -14.85108 -14.78607 -14.53324 -14.41489 -14.09879 -13.74799 -13.64087 -13.35976 -13.12761 -12.98444 -12.29220 -12.21873 -12.16812 -12.01826 -11.95560 -11.89629 -11.83637 -11.62516 -11.47151 -11.37561 -11.26063 -11.19952 -10.93479 -10.76495 -9.16220 -8.81452 -6.42961 -0.89567 -0.73482 0.05519 0.75650 1.09928 1.19275 1.24205 1.26477 1.30367 1.95593 2.14404 2.44830 2.66003 3.29436 3.44007 3.63113 3.86480 3.96231 4.03519 4.12265 4.21807 4.22222 4.27351 4.36400 4.48057 4.52508 4.62118 4.75957 4.82198 4.89037 4.94591 4.97988 5.00944 5.12568 5.24554 5.29013 5.36861 5.42557 5.50183 5.74273 6.07856 6.25124 6.31183 6.52312 6.62030 7.27445 8.11722 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012798 B = 0.005616 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.401718 B = 4984.726937 C = 6340.676277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.117 4.117 4 C 0.106 3.894 5 N -0.424 5.424 6 C -0.349 4.349 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.789 5.789 10 Si 0.947 3.053 11 H -0.224 1.224 12 H -0.271 1.271 13 H -0.256 1.256 14 C 0.387 3.613 15 N -0.514 5.514 16 C 0.196 3.804 17 C -0.181 4.181 18 C -0.016 4.016 19 C 0.499 3.501 20 O -0.523 6.523 21 O -0.331 6.331 22 C 0.028 3.972 23 C -0.124 4.124 24 N 0.093 4.907 25 O -0.270 6.270 26 O -0.314 6.314 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.305 0.695 37 H 0.238 0.762 38 H 0.202 0.798 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -5.775 17.843 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.155 4.155 4 C -0.016 4.016 5 N -0.113 5.113 6 C -0.487 4.487 7 H 0.081 0.919 8 C -0.167 4.167 9 N -0.419 5.419 10 Si 0.766 3.234 11 H -0.147 1.147 12 H -0.197 1.197 13 H -0.180 1.180 14 C 0.150 3.850 15 N -0.234 5.234 16 C 0.030 3.970 17 C -0.205 4.205 18 C -0.026 4.026 19 C 0.343 3.657 20 O -0.412 6.412 21 O -0.246 6.246 22 C -0.065 4.065 23 C -0.217 4.217 24 N 0.530 4.470 25 O -0.443 6.443 26 O -0.475 6.475 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.254 0.746 38 H 0.219 0.781 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.994 -6.521 17.467 19.302 hybrid contribution 1.216 1.561 -1.508 2.488 sum -3.778 -4.960 15.959 17.134 Atomic orbital electron populations 1.21723 0.94699 1.02339 1.01599 1.21446 0.96819 0.94332 1.02755 1.21791 0.93530 0.98773 1.01427 1.22053 0.96020 0.81436 1.02043 1.41500 1.55937 1.12962 1.00896 1.20146 1.25680 1.07164 0.95689 0.91880 1.28138 0.93599 1.01282 0.93678 1.68688 1.27295 1.38348 1.07565 0.85806 0.78837 0.78043 0.80685 1.14749 1.19678 1.17955 1.19208 0.91598 0.85665 0.88511 1.67464 1.22823 1.35677 0.97423 1.23818 0.88072 0.90004 0.95073 1.22502 1.03046 0.97707 0.97227 1.19157 0.99570 0.91283 0.92558 1.21299 0.76066 0.86053 0.82309 1.90998 1.45375 1.67966 1.36895 1.86481 1.74004 1.33525 1.30608 1.23744 0.97623 0.78436 1.06698 1.20590 1.18504 0.99390 0.83202 1.49209 1.00055 0.96916 1.00774 1.96084 1.08182 1.68776 1.71269 1.96065 1.56263 1.30142 1.65060 0.93750 0.91016 0.92432 0.92069 0.90140 0.91529 0.94216 0.91696 0.89080 0.88208 0.74609 0.78100 0.92276 0.92323 0.82622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.91 71.98 0.71 -2.30 16 2 C -0.12 -2.77 5.93 30.59 0.18 -2.59 16 3 C -0.12 -3.81 5.51 30.59 0.17 -3.65 16 4 C 0.11 4.02 3.81 86.38 0.33 4.34 16 5 N -0.42 -20.30 2.07 -513.16 -1.06 -21.37 16 6 C -0.35 -19.88 6.68 86.80 0.58 -19.30 16 7 H 0.06 4.32 5.69 -2.91 -0.02 4.30 16 8 C 0.06 3.06 4.84 87.31 0.42 3.48 16 9 N -0.79 -44.87 13.88 23.26 0.32 -44.55 16 10 Si 0.95 40.54 25.14 68.60 1.72 42.27 16 11 H -0.22 -8.07 6.94 99.48 0.69 -7.38 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 13 H -0.26 -11.03 7.10 99.48 0.71 -10.33 16 14 C 0.39 17.45 7.29 133.04 0.97 18.42 16 15 N -0.51 -17.21 9.07 -193.30 -1.75 -18.96 16 16 C 0.20 4.42 11.17 84.70 0.95 5.37 16 17 C -0.18 -4.52 9.70 22.68 0.22 -4.30 16 18 C -0.02 -0.62 5.90 -19.91 -0.12 -0.74 16 19 C 0.50 19.88 7.92 70.43 0.56 20.43 16 20 O -0.52 -26.32 14.26 25.34 0.36 -25.96 16 21 O -0.33 -9.28 9.92 -55.81 -0.55 -9.84 16 22 C 0.03 0.58 10.56 113.37 1.20 1.78 16 23 C -0.12 -6.16 6.21 36.93 0.23 -5.93 16 24 N 0.09 5.66 1.00 -45.16 -0.05 5.61 16 25 O -0.27 -17.66 17.90 3.52 0.06 -17.59 16 26 O -0.31 -20.85 17.63 9.00 0.16 -20.69 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.18 8.14 -2.38 -0.02 1.17 16 29 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 2.16 7.97 -2.39 -0.02 2.15 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 2.51 4.56 -2.39 -0.01 2.50 16 35 H 0.09 3.08 7.66 -2.39 -0.02 3.06 16 36 H 0.31 15.38 8.26 -92.71 -0.77 14.61 16 37 H 0.24 2.14 8.06 -2.92 -0.02 2.12 16 38 H 0.20 3.01 7.71 -2.91 -0.02 2.99 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -87.33 350.63 6.67 -80.67 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.05 Total: 15.37 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.40 Total: 15.03 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -2.54 Total: -79.26 kcal Atomic # 8 Polarization: -74.10 SS G_CDS: 0.03 Total: -74.07 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 1.72 Total: 42.27 kcal Total: -87.33 6.67 -80.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.461 kcal (2) G-P(sol) polarization free energy of solvation -87.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds