Wall clock time and date at job start Tue Mar 31 2020 13:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47036 * 2 1 4 4 C 1.50695 * 109.47322 * 119.99856 * 2 1 3 5 5 N 1.30158 * 125.00485 * 94.97326 * 4 2 1 6 6 C 1.35452 * 109.44688 * 179.97438 * 5 4 2 7 7 C 1.40571 * 107.13065 * 359.97438 * 6 5 4 8 8 N 1.32852 * 119.07878 * 180.02562 * 7 6 5 9 9 C 1.31655 * 120.63733 * 359.97438 * 8 7 6 10 10 N 1.32026 * 122.46456 * 0.02933 * 9 8 7 11 11 C 1.32901 * 121.19972 * 359.97238 * 10 9 8 12 12 N 1.38588 * 120.77102 * 179.72361 * 11 10 9 13 13 C 1.38425 * 120.00294 * 355.12773 * 12 11 10 14 14 C 1.38949 * 120.00101 * 301.04808 * 13 12 11 15 15 H 1.07995 * 120.00706 * 159.55889 * 14 13 12 16 16 C 1.40868 * 119.99648 * 339.55263 * 14 13 12 17 17 N 1.30316 * 120.00262 * 350.60222 * 16 14 13 18 18 Si 1.86806 * 119.99855 * 170.59816 * 16 14 13 19 19 H 1.48504 * 109.47064 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46943 * 120.00110 * 18 16 14 21 21 H 1.48502 * 109.47116 * 240.00292 * 18 16 14 22 22 C 1.41132 * 120.00246 * 121.04270 * 13 12 11 23 23 C 1.43197 * 120.00225 * 185.39646 * 22 13 12 24 24 N 9.08235 * 128.79987 * 230.79406 * 4 1 2 25 25 C 1.43205 * 119.99969 * 5.39462 * 22 13 12 26 26 N 7.43431 * 84.91610 * 163.78151 * 2 1 3 27 27 N 1.36307 * 125.01096 * 274.91578 * 4 2 1 28 28 H 0.96999 * 126.27162 * 0.04556 * 27 4 2 29 29 H 1.08994 * 109.46853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47318 * 300.00038 * 1 2 3 31 31 H 1.09001 * 109.47138 * 59.99861 * 1 2 3 32 32 H 1.09002 * 109.47318 * 239.99962 * 2 1 3 33 33 H 1.08998 * 109.46666 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46949 * 299.99738 * 3 2 1 35 35 H 1.08996 * 109.46782 * 60.00137 * 3 2 1 36 36 H 1.07999 * 118.77277 * 179.97438 * 9 8 7 37 37 H 0.97004 * 119.99952 * 175.12196 * 12 11 10 38 38 H 0.97006 * 120.00375 * 185.04277 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 2.3684 -1.9667 1.2823 6 6 2.7743 -2.2735 2.5377 7 6 2.6732 -1.0994 3.3040 8 7 3.0170 -1.1340 4.5868 9 6 3.4464 -2.2507 5.1364 10 7 3.5582 -3.3774 4.4574 11 6 3.2378 -3.4396 3.1691 12 7 3.3639 -4.6257 2.4635 13 6 3.9224 -5.7368 3.0716 14 6 5.2160 -5.6766 3.5751 15 1 5.5392 -6.3882 4.3204 16 6 6.1062 -4.6874 3.1132 17 7 5.7844 -3.9478 2.0897 18 14 7.7481 -4.4357 3.9680 19 1 7.8722 -5.3958 5.0941 20 1 8.8504 -4.6641 2.9996 21 1 7.8269 -3.0475 4.4895 22 6 3.1777 -6.9307 3.1804 23 6 3.7095 -8.0423 3.9099 24 7 4.1332 -8.9241 4.4878 25 6 1.8903 -7.0306 2.5612 26 7 0.8712 -7.1104 2.0682 27 7 2.2029 -0.1316 2.4527 28 1 2.0243 0.7945 2.6791 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.7182 -2.2446 6.1816 37 1 3.0609 -4.6773 1.5435 38 1 6.4257 -3.3173 1.7260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169078274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:04 Heat of formation + Delta-G solvation = 146.019432 kcal Electronic energy + Delta-G solvation = -26350.160234 eV Core-core repulsion = 22614.325845 eV Total energy + Delta-G solvation = -3735.834388 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.119 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.23232 -39.18646 -37.42078 -35.37466 -35.27185 -34.68601 -34.00886 -32.78055 -31.54108 -30.50211 -28.40841 -27.45893 -27.10070 -24.31068 -23.51973 -22.01220 -21.34605 -20.27951 -19.27384 -18.63468 -17.42350 -16.96507 -16.53282 -16.23699 -15.73041 -15.60582 -15.03424 -14.39235 -14.28570 -13.89920 -13.72163 -13.57080 -12.85858 -12.73995 -12.56125 -12.45755 -12.27267 -11.87087 -11.78869 -11.70443 -11.66203 -11.50007 -11.47404 -11.38106 -11.32989 -11.08136 -10.94099 -10.86719 -10.54390 -10.15063 -9.92699 -9.64986 -8.96219 -8.56964 -8.15231 -7.74191 -7.00853 -5.36825 1.24374 1.77806 2.28825 2.68505 2.72559 2.81851 2.87847 2.99220 3.42316 3.65131 3.92407 4.01372 4.11387 4.27410 4.36045 4.49031 4.52232 4.63632 4.80018 4.88571 4.98928 5.15236 5.25277 5.29199 5.32782 5.48228 5.56546 5.65219 5.69254 5.84511 5.97425 6.00067 6.20597 6.22788 6.42825 6.74882 7.07764 7.12299 7.29175 7.40647 7.71059 7.77577 7.99123 8.18099 8.33595 8.87556 9.01134 9.18352 9.21887 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.012020 B = 0.004873 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.918609 B = 5744.536529 C = 6935.308564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 C -0.152 4.152 4 C 0.258 3.742 5 N -0.443 5.443 6 C -0.099 4.099 7 C 0.298 3.702 8 N -0.582 5.582 9 C 0.360 3.640 10 N -0.568 5.568 11 C 0.546 3.454 12 N -0.606 5.606 13 C 0.376 3.624 14 C -0.342 4.342 15 H 0.114 0.886 16 C 0.074 3.926 17 N -0.725 5.725 18 Si 0.927 3.073 19 H -0.245 1.245 20 H -0.265 1.265 21 H -0.263 1.263 22 C -0.312 4.312 23 C 0.328 3.672 24 N -0.535 5.535 25 C 0.308 3.692 26 N -0.535 5.535 27 N -0.579 5.579 28 H 0.421 0.579 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.197 0.803 37 H 0.417 0.583 38 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 17.177 -3.566 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 C -0.210 4.210 4 C -0.010 4.010 5 N -0.162 5.162 6 C -0.226 4.226 7 C 0.057 3.943 8 N -0.310 5.310 9 C 0.068 3.932 10 N -0.296 5.296 11 C 0.295 3.705 12 N -0.227 5.227 13 C 0.273 3.727 14 C -0.369 4.369 15 H 0.132 0.868 16 C -0.157 4.157 17 N -0.344 5.344 18 Si 0.748 3.252 19 H -0.168 1.168 20 H -0.189 1.189 21 H -0.188 1.188 22 C -0.331 4.331 23 C 0.020 3.980 24 N -0.217 5.217 25 C 0.001 3.999 26 N -0.217 5.217 27 N -0.194 5.194 28 H 0.260 0.740 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.214 0.786 37 H 0.256 0.744 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.792 15.155 -3.289 15.528 hybrid contribution 0.627 1.712 -0.180 1.833 sum -0.165 16.867 -3.469 17.221 Atomic orbital electron populations 1.21862 0.93202 1.03147 1.02152 1.19684 0.96221 0.94912 0.92207 1.21901 1.01844 0.94689 1.02544 1.23291 1.01714 0.89401 0.86557 1.70116 1.15620 1.11489 1.19007 1.19567 1.15152 0.95263 0.92638 1.18660 0.97288 0.88186 0.90163 1.67242 1.23442 1.31700 1.08605 1.24413 0.88490 0.81030 0.99268 1.68173 1.26741 1.29184 1.05469 1.17436 0.83237 0.82953 0.86918 1.41385 1.59689 1.06993 1.14624 1.16713 0.89035 0.82101 0.84883 1.20239 0.93144 1.08009 1.15524 0.86839 1.26562 1.02841 0.92298 0.93995 1.69503 1.36640 1.13058 1.15182 0.85871 0.78147 0.80321 0.80817 1.16774 1.18915 1.18799 1.12773 0.95166 0.94326 1.30842 1.24612 0.91644 0.91093 0.90614 1.81062 1.11069 1.12118 1.17492 1.25167 0.91421 0.92277 0.91049 1.81017 1.13498 1.09545 1.17669 1.42446 1.56388 1.11847 1.08750 0.73975 0.91529 0.92667 0.91383 0.87441 0.91895 0.90986 0.92726 0.78646 0.74401 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.18 37.16 0.34 -0.85 16 2 C -0.01 -0.09 3.39 -91.77 -0.31 -0.40 16 3 C -0.15 -1.02 8.92 37.16 0.33 -0.69 16 4 C 0.26 3.52 6.83 -154.53 -1.05 2.46 16 5 N -0.44 -7.79 11.28 -8.04 -0.09 -7.88 16 6 C -0.10 -1.89 7.17 -84.55 -0.61 -2.49 16 7 C 0.30 5.15 8.51 -155.81 -1.33 3.82 16 8 N -0.58 -9.96 10.47 -13.90 -0.15 -10.11 16 9 C 0.36 6.07 12.25 -92.07 -1.13 4.94 16 10 N -0.57 -11.11 8.93 -13.57 -0.12 -11.24 16 11 C 0.55 11.06 5.80 -154.48 -0.90 10.16 16 12 N -0.61 -12.54 3.36 -9.43 -0.03 -12.58 16 13 C 0.38 8.12 5.52 -83.52 -0.46 7.66 16 14 C -0.34 -7.20 7.82 -38.32 -0.30 -7.50 16 15 H 0.11 2.43 7.00 -52.49 -0.37 2.06 16 16 C 0.07 1.44 4.89 -17.20 -0.08 1.36 16 17 N -0.73 -14.32 10.89 55.60 0.61 -13.72 16 18 Si 0.93 15.37 29.58 -169.99 -5.03 10.35 16 19 H -0.25 -4.13 7.11 56.52 0.40 -3.73 16 20 H -0.26 -4.30 7.11 56.52 0.40 -3.90 16 21 H -0.26 -4.40 7.11 56.52 0.40 -4.00 16 22 C -0.31 -7.06 5.88 -104.95 -0.62 -7.68 16 23 C 0.33 7.68 13.90 -22.47 -0.31 7.37 16 24 N -0.53 -12.92 18.54 41.85 0.78 -12.14 16 25 C 0.31 7.19 14.79 -22.51 -0.33 6.86 16 26 N -0.53 -12.95 18.53 41.79 0.77 -12.18 16 27 N -0.58 -7.68 5.94 -9.47 -0.06 -7.73 16 28 H 0.42 4.15 8.10 -40.82 -0.33 3.82 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.31 7.37 -51.93 -0.38 -0.07 16 36 H 0.20 2.52 8.06 -52.49 -0.42 2.09 16 37 H 0.42 8.62 8.80 -40.82 -0.36 8.26 16 38 H 0.30 5.50 8.29 -40.82 -0.34 5.16 16 LS Contribution 350.14 15.07 5.28 5.28 Total: -1.00 -28.08 350.14 -8.33 -36.41 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -3.53 Total: 10.51 kcal Atomic # 6 Polarization: 31.78 SS G_CDS: -6.76 Total: 25.03 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: 1.71 Total: -87.57 kcal Atomic # 14 Polarization: 15.37 SS G_CDS: -5.03 Total: 10.35 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.08 -8.33 -36.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169078274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.431 kcal (2) G-P(sol) polarization free energy of solvation -28.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds