Wall clock time and date at job start Tue Mar 31 2020 14:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34226 * 117.00043 * 2 1 4 4 O 1.20831 * 119.99953 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00239 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47064 * 60.00326 * 5 3 2 7 7 C 1.52996 * 109.47438 * 300.00559 * 5 3 2 8 8 C 1.53006 * 109.47418 * 180.02562 * 5 3 2 9 9 C 1.50702 * 109.47230 * 180.02562 * 8 5 3 10 10 O 1.21292 * 119.99805 * 359.97438 * 9 8 5 11 11 N 1.34776 * 119.99860 * 180.02562 * 9 8 5 12 12 C 1.40003 * 119.99670 * 175.68417 * 11 9 8 13 13 C 1.39370 * 119.91069 * 215.20297 * 12 11 9 14 14 C 1.38363 * 120.47259 * 180.02562 * 13 12 11 15 15 C 1.38003 * 120.28510 * 0.02562 * 14 13 12 16 16 F 1.35105 * 120.09028 * 179.97438 * 15 14 13 17 17 C 1.41003 * 119.81480 * 359.97017 * 15 14 13 18 18 C 1.41298 * 120.23094 * 179.97438 * 17 15 14 19 19 H 1.08009 * 119.99854 * 324.96994 * 18 17 15 20 20 C 1.39922 * 120.00005 * 145.23676 * 18 17 15 21 21 N 1.30846 * 119.99871 * 4.44660 * 20 18 17 22 22 Si 1.86798 * 119.99920 * 184.44727 * 20 18 17 23 23 H 1.48500 * 109.47267 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47421 * 120.00390 * 22 20 18 25 25 H 1.48501 * 109.47188 * 240.00494 * 22 20 18 26 26 C 1.38144 * 119.91393 * 35.44305 * 12 11 9 27 27 H 1.08995 * 109.47093 * 59.99694 * 1 2 3 28 28 H 1.09002 * 109.46826 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46880 * 299.99398 * 1 2 3 30 30 H 1.08998 * 109.47441 * 180.02562 * 6 5 3 31 31 H 1.09003 * 109.47325 * 300.00380 * 6 5 3 32 32 H 1.09000 * 109.46990 * 59.99952 * 6 5 3 33 33 H 1.08997 * 109.47045 * 299.99858 * 7 5 3 34 34 H 1.09003 * 109.47194 * 59.99463 * 7 5 3 35 35 H 1.08998 * 109.47319 * 179.97438 * 7 5 3 36 36 H 1.08997 * 109.46759 * 60.00329 * 8 5 3 37 37 H 1.08998 * 109.46673 * 300.00469 * 8 5 3 38 38 H 0.96997 * 119.99802 * 355.67875 * 11 9 8 39 39 H 1.08001 * 119.76216 * 0.02562 * 13 12 11 40 40 H 1.08004 * 119.85213 * 179.97438 * 14 13 12 41 41 H 0.97005 * 119.99701 * 179.97438 * 21 20 18 42 42 H 1.07994 * 120.14538 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1138 0.5811 -1.2484 7 6 4.1129 0.5815 1.2501 8 6 4.0001 2.7421 0.0011 9 6 5.5051 2.8210 0.0011 10 8 6.1656 1.8037 0.0011 11 7 6.1169 4.0219 0.0020 12 6 7.5120 4.0966 0.0932 13 6 8.1074 5.1421 0.7966 14 6 9.4850 5.2275 0.8937 15 6 10.2853 4.2769 0.2934 16 9 11.6300 4.3645 0.3902 17 6 9.6956 3.2140 -0.4212 18 6 10.5066 2.2361 -1.0397 19 1 11.4564 2.5163 -1.4709 20 6 10.0768 0.9058 -1.0984 21 7 8.8873 0.5827 -0.6592 22 14 11.2009 -0.4087 -1.8039 23 1 12.4822 0.2110 -2.2276 24 1 11.4686 -1.4390 -0.7685 25 1 10.5460 -1.0432 -2.9759 26 6 8.2947 3.1366 -0.5185 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 5.2023 0.6378 -1.2478 31 1 3.8048 -0.4642 -1.2484 32 1 3.7244 1.0751 -2.1386 33 1 3.7229 1.0757 2.1398 34 1 3.8038 -0.4638 1.2501 35 1 5.2014 0.6382 1.2502 36 1 3.6101 3.2359 0.8911 37 1 3.6106 3.2364 -0.8889 38 1 5.5907 4.8343 -0.0606 39 1 7.4891 5.8909 1.2693 40 1 9.9359 6.0422 1.4409 41 1 8.5892 -0.3395 -0.7002 42 1 7.8329 2.3291 -1.0670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182535901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:17 Heat of formation + Delta-G solvation = -146.881819 kcal Electronic energy + Delta-G solvation = -27766.595322 eV Core-core repulsion = 23626.245398 eV Total energy + Delta-G solvation = -4140.349923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.18408 -40.95590 -39.67800 -37.43448 -36.60529 -35.25840 -34.15137 -33.13505 -29.72904 -29.27347 -27.93186 -27.18757 -26.89978 -25.32304 -23.64501 -21.86314 -21.11395 -19.96158 -19.27198 -17.65844 -17.39236 -16.94508 -16.47009 -16.01445 -15.90014 -15.69376 -15.18793 -14.83809 -14.30785 -14.08486 -13.94398 -13.89266 -13.81598 -13.13888 -12.91487 -12.82221 -12.54281 -12.45711 -12.02696 -11.98219 -11.72490 -11.69556 -11.47928 -11.39194 -11.10030 -10.96434 -10.95923 -10.94144 -10.84825 -10.56206 -10.36998 -10.17211 -9.66835 -9.21277 -9.02106 -8.73751 -7.43738 -6.90508 -6.50429 -4.39352 2.12251 2.47405 2.56086 2.79003 3.09796 3.13472 3.18826 3.30591 3.75596 4.00399 4.44292 4.65637 4.80539 4.84458 4.90094 4.97810 5.07194 5.28779 5.31583 5.47744 5.61023 5.63085 5.87540 5.88625 5.92633 6.00211 6.09827 6.10810 6.22541 6.37937 6.55301 6.59975 6.81719 6.92777 7.00805 7.25959 7.43913 7.54472 7.63835 7.72872 8.04094 8.13271 8.30684 8.52766 8.85093 8.86600 8.88359 10.30024 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.003792 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.770430 B = 7381.798721 C = 8974.924444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.353 6.353 3 C 0.473 3.527 4 O -0.514 6.514 5 C -0.030 4.030 6 C -0.155 4.155 7 C -0.154 4.154 8 C -0.122 4.122 9 C 0.496 3.504 10 O -0.472 6.472 11 N -0.670 5.670 12 C 0.130 3.870 13 C -0.234 4.234 14 C -0.116 4.116 15 C -0.032 4.032 16 F -0.164 7.164 17 C 0.090 3.910 18 C -0.457 4.457 19 H 0.079 0.921 20 C 0.069 3.931 21 N -0.770 5.770 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.129 4.129 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.397 0.603 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.280 0.720 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.481 -0.987 0.451 14.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.269 6.269 3 C 0.316 3.684 4 O -0.401 6.401 5 C -0.031 4.031 6 C -0.212 4.212 7 C -0.211 4.211 8 C -0.163 4.163 9 C 0.282 3.718 10 O -0.345 6.345 11 N -0.314 5.314 12 C 0.038 3.962 13 C -0.256 4.256 14 C -0.136 4.136 15 C -0.052 4.052 16 F -0.143 7.143 17 C 0.086 3.914 18 C -0.486 4.486 19 H 0.097 0.903 20 C -0.150 4.150 21 N -0.394 5.394 22 Si 0.737 3.263 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.150 4.150 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.231 0.769 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.395 -1.691 0.493 14.503 hybrid contribution -0.067 0.058 -0.106 0.139 sum -14.463 -1.633 0.387 14.560 Atomic orbital electron populations 1.23256 0.76783 1.03576 1.02397 1.86534 1.22978 1.33482 1.83892 1.23981 0.92037 0.81124 0.71265 1.90636 1.67343 1.36390 1.45768 1.20169 0.85441 0.96661 1.00874 1.22167 1.05860 0.99795 0.93334 1.22155 1.05737 0.99815 0.93369 1.21551 0.93679 0.95750 1.05302 1.20371 0.89487 0.84188 0.77792 1.90816 1.65524 1.32993 1.45161 1.43354 1.06351 1.08232 1.73471 1.17680 0.80762 0.98087 0.99689 1.19914 0.93543 1.02362 1.09735 1.20253 0.93313 0.98359 1.01672 1.18056 0.76107 1.02657 1.08420 1.91271 1.31041 1.96517 1.95463 1.17576 0.92534 0.90418 0.90882 1.19429 1.04405 0.92011 1.32798 0.90316 1.25905 0.95468 0.99835 0.93795 1.69851 1.16013 1.20168 1.33357 0.86192 0.80891 0.80212 0.79032 1.18607 1.19924 1.19956 1.21679 0.92157 0.99653 1.01555 0.92012 0.88176 0.92018 0.86994 0.91770 0.93161 0.93203 0.91757 0.87164 0.88502 0.88513 0.76932 0.88374 0.87907 0.90857 0.82297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.35 16 2 O -0.35 -4.19 10.37 -39.25 -0.41 -4.60 16 3 C 0.47 6.27 6.55 36.00 0.24 6.51 16 4 O -0.51 -7.63 15.73 -18.75 -0.30 -7.92 16 5 C -0.03 -0.40 0.71 -155.66 -0.11 -0.51 16 6 C -0.15 -2.11 8.11 37.16 0.30 -1.81 16 7 C -0.15 -2.09 8.11 37.16 0.30 -1.79 16 8 C -0.12 -1.61 4.06 -27.88 -0.11 -1.72 16 9 C 0.50 8.31 7.08 -10.98 -0.08 8.23 16 10 O -0.47 -9.50 8.74 5.55 0.05 -9.46 16 11 N -0.67 -11.32 5.34 -9.90 -0.05 -11.37 16 12 C 0.13 2.80 6.29 -83.74 -0.53 2.27 16 13 C -0.23 -4.83 9.97 -39.11 -0.39 -5.22 16 14 C -0.12 -2.58 10.00 -39.62 -0.40 -2.97 16 15 C -0.03 -0.81 7.31 -38.62 -0.28 -1.09 16 16 F -0.16 -4.16 16.82 2.25 0.04 -4.12 16 17 C 0.09 2.40 5.55 -106.78 -0.59 1.81 16 18 C -0.46 -12.30 8.69 -37.79 -0.33 -12.63 16 19 H 0.08 2.11 7.84 -52.48 -0.41 1.70 16 20 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 21 N -0.77 -19.60 10.55 55.55 0.59 -19.01 16 22 Si 0.91 19.11 29.56 -169.99 -5.03 14.09 16 23 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 26 C -0.13 -3.22 7.30 -38.71 -0.28 -3.51 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 30 H 0.11 1.85 5.51 -51.93 -0.29 1.56 16 31 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.11 1.81 5.51 -51.93 -0.29 1.52 16 36 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 37 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16 38 H 0.40 5.20 8.82 -40.82 -0.36 4.84 16 39 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.10 2.00 8.06 -52.48 -0.42 1.58 16 41 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 42 H 0.16 4.16 4.35 -52.49 -0.23 3.93 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -30.01 353.68 -6.42 -36.43 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.35 Total: 10.09 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.29 Total: -9.45 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: 0.53 Total: -30.39 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.65 Total: -21.97 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.04 Total: -4.12 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.01 -6.42 -36.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182535901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.456 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds