Wall clock time and date at job start Tue Mar 31 2020 14:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34226 * 117.00043 * 2 1 4 4 O 1.20831 * 119.99953 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00239 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47064 * 60.00326 * 5 3 2 7 7 C 1.52996 * 109.47438 * 300.00559 * 5 3 2 8 8 C 1.53006 * 109.47418 * 180.02562 * 5 3 2 9 9 C 1.50702 * 109.47230 * 180.02562 * 8 5 3 10 10 O 1.21292 * 119.99805 * 359.97438 * 9 8 5 11 11 N 1.34776 * 119.99860 * 180.02562 * 9 8 5 12 12 C 1.40003 * 119.99670 * 175.68417 * 11 9 8 13 13 C 1.39370 * 119.91069 * 215.20297 * 12 11 9 14 14 C 1.38363 * 120.47259 * 180.02562 * 13 12 11 15 15 C 1.38003 * 120.28510 * 0.02562 * 14 13 12 16 16 F 1.35105 * 120.09028 * 179.97438 * 15 14 13 17 17 C 1.41003 * 119.81480 * 359.97017 * 15 14 13 18 18 C 1.41298 * 120.23094 * 179.97438 * 17 15 14 19 19 H 1.08009 * 119.99854 * 324.96994 * 18 17 15 20 20 C 1.39922 * 120.00005 * 145.23676 * 18 17 15 21 21 N 1.30846 * 119.99871 * 4.44660 * 20 18 17 22 22 Si 1.86798 * 119.99920 * 184.44727 * 20 18 17 23 23 H 1.48500 * 109.47267 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47421 * 120.00390 * 22 20 18 25 25 H 1.48501 * 109.47188 * 240.00494 * 22 20 18 26 26 C 1.38144 * 119.91393 * 35.44305 * 12 11 9 27 27 H 1.08995 * 109.47093 * 59.99694 * 1 2 3 28 28 H 1.09002 * 109.46826 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46880 * 299.99398 * 1 2 3 30 30 H 1.08998 * 109.47441 * 180.02562 * 6 5 3 31 31 H 1.09003 * 109.47325 * 300.00380 * 6 5 3 32 32 H 1.09000 * 109.46990 * 59.99952 * 6 5 3 33 33 H 1.08997 * 109.47045 * 299.99858 * 7 5 3 34 34 H 1.09003 * 109.47194 * 59.99463 * 7 5 3 35 35 H 1.08998 * 109.47319 * 179.97438 * 7 5 3 36 36 H 1.08997 * 109.46759 * 60.00329 * 8 5 3 37 37 H 1.08998 * 109.46673 * 300.00469 * 8 5 3 38 38 H 0.96997 * 119.99802 * 355.67875 * 11 9 8 39 39 H 1.08001 * 119.76216 * 0.02562 * 13 12 11 40 40 H 1.08004 * 119.85213 * 179.97438 * 14 13 12 41 41 H 0.97005 * 119.99701 * 179.97438 * 21 20 18 42 42 H 1.07994 * 120.14538 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1138 0.5811 -1.2484 7 6 4.1129 0.5815 1.2501 8 6 4.0001 2.7421 0.0011 9 6 5.5051 2.8210 0.0011 10 8 6.1656 1.8037 0.0011 11 7 6.1169 4.0219 0.0020 12 6 7.5120 4.0966 0.0932 13 6 8.1074 5.1421 0.7966 14 6 9.4850 5.2275 0.8937 15 6 10.2853 4.2769 0.2934 16 9 11.6300 4.3645 0.3902 17 6 9.6956 3.2140 -0.4212 18 6 10.5066 2.2361 -1.0397 19 1 11.4564 2.5163 -1.4709 20 6 10.0768 0.9058 -1.0984 21 7 8.8873 0.5827 -0.6592 22 14 11.2009 -0.4087 -1.8039 23 1 12.4822 0.2110 -2.2276 24 1 11.4686 -1.4390 -0.7685 25 1 10.5460 -1.0432 -2.9759 26 6 8.2947 3.1366 -0.5185 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 5.2023 0.6378 -1.2478 31 1 3.8048 -0.4642 -1.2484 32 1 3.7244 1.0751 -2.1386 33 1 3.7229 1.0757 2.1398 34 1 3.8038 -0.4638 1.2501 35 1 5.2014 0.6382 1.2502 36 1 3.6101 3.2359 0.8911 37 1 3.6106 3.2364 -0.8889 38 1 5.5907 4.8343 -0.0606 39 1 7.4891 5.8909 1.2693 40 1 9.9359 6.0422 1.4409 41 1 8.5892 -0.3395 -0.7002 42 1 7.8329 2.3291 -1.0670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182535901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:16 Heat of formation + Delta-G solvation = -163.700093 kcal Electronic energy + Delta-G solvation = -27767.324617 eV Core-core repulsion = 23626.245398 eV Total energy + Delta-G solvation = -4141.079218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.13250 -42.03250 -41.01493 -39.01759 -37.64804 -36.54081 -35.77459 -34.81637 -31.57744 -30.68310 -28.84699 -28.28614 -28.21475 -27.19364 -24.69894 -23.54491 -22.74568 -21.36690 -20.53148 -19.41055 -18.44078 -18.06886 -17.86913 -17.55164 -17.39613 -17.14013 -16.60230 -16.32621 -15.93047 -15.89167 -15.25457 -15.00192 -14.95124 -14.66942 -14.34378 -14.04445 -13.93010 -13.72389 -13.62327 -13.34305 -13.26585 -12.99611 -12.85093 -12.79810 -12.73213 -12.51274 -12.22051 -12.05507 -12.00830 -11.97157 -11.77842 -11.48622 -11.36401 -11.05865 -10.62178 -10.20848 -9.30106 -8.67357 -8.32843 -6.37180 0.72971 0.99178 1.10157 1.38624 1.44982 1.53037 1.60697 1.87906 2.25034 2.43891 2.81492 3.38369 3.54191 3.78789 3.79347 3.98716 4.10095 4.17956 4.31258 4.34266 4.39703 4.58063 4.59595 4.69927 4.70996 4.80703 4.87239 4.90037 5.00077 5.08710 5.12909 5.20825 5.29886 5.34868 5.44197 5.52927 5.70158 5.87285 5.89633 6.18424 6.33681 6.63409 6.65784 6.78140 6.93741 6.97372 7.53314 8.44227 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.003792 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.770430 B = 7381.798721 C = 8974.924444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.480 3.520 4 O -0.529 6.529 5 C -0.030 4.030 6 C -0.149 4.149 7 C -0.147 4.147 8 C -0.110 4.110 9 C 0.492 3.508 10 O -0.504 6.504 11 N -0.661 5.661 12 C 0.138 3.862 13 C -0.217 4.217 14 C -0.114 4.114 15 C -0.067 4.067 16 F -0.173 7.173 17 C 0.058 3.942 18 C -0.500 4.500 19 H 0.063 0.937 20 C 0.032 3.968 21 N -0.792 5.792 22 Si 0.978 3.022 23 H -0.267 1.267 24 H -0.268 1.268 25 H -0.261 1.261 26 C -0.150 4.150 27 H 0.063 0.937 28 H 0.130 0.870 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.419 0.581 39 H 0.144 0.856 40 H 0.134 0.866 41 H 0.284 0.716 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.963 -0.458 1.033 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.324 3.676 4 O -0.419 6.419 5 C -0.032 4.032 6 C -0.206 4.206 7 C -0.204 4.204 8 C -0.150 4.150 9 C 0.280 3.720 10 O -0.379 6.379 11 N -0.308 5.308 12 C 0.044 3.956 13 C -0.238 4.238 14 C -0.134 4.134 15 C -0.087 4.087 16 F -0.152 7.152 17 C 0.054 3.946 18 C -0.530 4.530 19 H 0.081 0.919 20 C -0.185 4.185 21 N -0.416 5.416 22 Si 0.800 3.200 23 H -0.191 1.191 24 H -0.193 1.193 25 H -0.186 1.186 26 C -0.172 4.172 27 H 0.082 0.918 28 H 0.148 0.852 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.257 0.743 39 H 0.161 0.839 40 H 0.152 0.848 41 H 0.095 0.905 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.923 -1.139 1.078 16.995 hybrid contribution 0.547 -0.033 -0.227 0.593 sum -16.376 -1.172 0.851 16.439 Atomic orbital electron populations 1.23584 0.74705 1.05724 1.02677 1.86514 1.24992 1.32584 1.83385 1.23703 0.91615 0.81337 0.70903 1.90631 1.67605 1.36929 1.46710 1.20115 0.86050 0.96671 1.00355 1.22044 1.03803 1.00613 0.94104 1.22033 1.03698 1.00633 0.94082 1.21495 0.90384 0.96094 1.07007 1.21040 0.90969 0.83446 0.76568 1.90847 1.66684 1.34216 1.46117 1.43288 1.04595 1.09610 1.73270 1.17772 0.82823 0.96974 0.98023 1.20405 0.93407 1.02242 1.07723 1.20640 0.93865 0.98126 1.00722 1.18428 0.76235 1.03935 1.10135 1.91229 1.31693 1.96630 1.95653 1.17927 0.93657 0.91244 0.91766 1.19527 1.04504 0.93604 1.35326 0.91916 1.26613 0.96871 1.01106 0.93868 1.69937 1.17044 1.20644 1.33982 0.85213 0.78717 0.77416 0.78682 1.19065 1.19254 1.18601 1.21585 0.91939 1.00655 1.03003 0.91775 0.85215 0.91721 0.90022 0.91020 0.92271 0.92135 0.91006 0.90142 0.86603 0.86750 0.74346 0.83878 0.84842 0.90542 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -7.67 10.37 -51.37 -0.53 -8.20 16 3 C 0.48 11.64 6.55 71.23 0.47 12.11 16 4 O -0.53 -14.31 15.73 21.95 0.35 -13.97 16 5 C -0.03 -0.76 0.71 -52.93 -0.04 -0.80 16 6 C -0.15 -3.98 8.11 71.98 0.58 -3.39 16 7 C -0.15 -3.87 8.11 71.98 0.58 -3.29 16 8 C -0.11 -2.64 4.06 29.85 0.12 -2.52 16 9 C 0.49 15.99 7.08 87.66 0.62 16.61 16 10 O -0.50 -20.66 8.74 -3.07 -0.03 -20.69 16 11 N -0.66 -21.03 5.34 -303.60 -1.62 -22.65 16 12 C 0.14 5.78 6.29 38.09 0.24 6.02 16 13 C -0.22 -8.34 9.97 22.57 0.22 -8.12 16 14 C -0.11 -4.89 10.00 22.24 0.22 -4.66 16 15 C -0.07 -3.47 7.31 22.89 0.17 -3.30 16 16 F -0.17 -9.07 16.82 44.97 0.76 -8.31 16 17 C 0.06 3.20 5.55 -21.26 -0.12 3.09 16 18 C -0.50 -28.43 8.69 23.43 0.20 -28.23 16 19 H 0.06 3.60 7.84 -2.91 -0.02 3.57 16 20 C 0.03 1.66 5.42 85.25 0.46 2.12 16 21 N -0.79 -42.02 10.55 21.82 0.23 -41.79 16 22 Si 0.98 40.58 29.56 68.60 2.03 42.61 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 26 C -0.15 -7.70 7.30 22.83 0.17 -7.53 16 27 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 28 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 30 H 0.08 2.77 5.51 -2.39 -0.01 2.75 16 31 H 0.07 1.76 8.11 -2.39 -0.02 1.74 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.73 8.11 -2.39 -0.02 1.71 16 35 H 0.08 2.67 5.51 -2.39 -0.01 2.66 16 36 H 0.12 2.40 8.10 -2.39 -0.02 2.38 16 37 H 0.11 2.40 8.10 -2.39 -0.02 2.38 16 38 H 0.42 9.56 8.82 -92.71 -0.82 8.74 16 39 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 40 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 41 H 0.28 13.93 8.30 -92.70 -0.77 13.16 16 42 H 0.14 7.77 4.35 -2.91 -0.01 7.75 16 Total: -1.00 -68.30 353.68 6.53 -61.77 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.25 Total: 31.56 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 5.10 Total: -20.33 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -1.39 Total: -64.44 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.21 Total: -42.86 kcal Atomic # 9 Polarization: -9.07 SS G_CDS: 0.76 Total: -8.31 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -68.30 6.53 -61.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182535901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.931 kcal (2) G-P(sol) polarization free energy of solvation -68.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds