Wall clock time and date at job start Tue Mar 31 2020 14:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 117.00007 * 2 1 4 4 O 1.20823 * 120.00398 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99855 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46914 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46984 * 59.99913 * 6 5 3 8 8 C 1.52989 * 109.47345 * 299.99700 * 6 5 3 9 9 C 1.50704 * 109.46581 * 179.97438 * 6 5 3 10 10 O 1.21280 * 120.00313 * 359.97438 * 9 6 5 11 11 N 1.34775 * 119.99757 * 180.02562 * 9 6 5 12 12 C 1.40007 * 120.00411 * 175.68822 * 11 9 6 13 13 C 1.39363 * 119.91134 * 215.21197 * 12 11 9 14 14 C 1.38369 * 120.46831 * 180.02562 * 13 12 11 15 15 C 1.38010 * 120.28812 * 359.97438 * 14 13 12 16 16 F 1.35098 * 120.09457 * 179.97438 * 15 14 13 17 17 C 1.41004 * 119.81183 * 359.97438 * 15 14 13 18 18 C 1.41301 * 120.23112 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99350 * 324.96507 * 18 17 15 20 20 C 1.39917 * 119.99933 * 145.23104 * 18 17 15 21 21 N 1.30854 * 119.99881 * 4.45819 * 20 18 17 22 22 Si 1.86799 * 119.99924 * 184.44389 * 20 18 17 23 23 H 1.48506 * 109.46651 * 90.00642 * 22 20 18 24 24 H 1.48495 * 109.47522 * 210.00563 * 22 20 18 25 25 H 1.48499 * 109.47185 * 330.01136 * 22 20 18 26 26 C 1.38147 * 119.90865 * 35.44119 * 12 11 9 27 27 H 1.09008 * 109.47009 * 59.99417 * 1 2 3 28 28 H 1.08998 * 109.47492 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47022 * 300.00525 * 1 2 3 30 30 H 1.08994 * 109.47122 * 59.99444 * 5 3 2 31 31 H 1.09000 * 109.46508 * 299.99380 * 5 3 2 32 32 H 1.08999 * 109.47145 * 179.97438 * 7 6 5 33 33 H 1.08996 * 109.47395 * 299.99581 * 7 6 5 34 34 H 1.09005 * 109.47404 * 59.99846 * 7 6 5 35 35 H 1.09000 * 109.47415 * 300.00017 * 8 6 5 36 36 H 1.08996 * 109.47501 * 60.00142 * 8 6 5 37 37 H 1.08999 * 109.47395 * 180.02562 * 8 6 5 38 38 H 0.97011 * 120.00054 * 355.68568 * 11 9 6 39 39 H 1.08005 * 119.76959 * 359.97438 * 13 12 11 40 40 H 1.08001 * 119.85621 * 179.97438 * 14 13 12 41 41 H 0.97002 * 119.99841 * 179.97438 * 21 20 18 42 42 H 1.07994 * 120.14514 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 6 3.4536 3.4359 1.2482 8 6 3.4528 3.4353 -1.2502 9 6 5.5052 2.8208 -0.0011 10 8 6.1657 1.8036 -0.0002 11 7 6.1171 4.0216 -0.0009 12 6 7.5122 4.0965 0.0903 13 6 8.1075 5.1423 0.7931 14 6 9.4852 5.2278 0.8901 15 6 10.2855 4.2763 0.2912 16 9 11.6302 4.3638 0.3880 17 6 9.6958 3.2124 -0.4219 18 6 10.5068 2.2335 -1.0390 19 1 11.4565 2.5131 -1.4705 20 6 10.0769 0.9033 -1.0958 21 7 8.8873 0.5808 -0.6563 22 14 11.2010 -0.4123 -1.7994 23 1 12.0314 -0.9876 -0.7109 24 1 10.3811 -1.4857 -2.4165 25 1 12.0841 0.1905 -2.8298 26 6 8.2950 3.1360 -0.5207 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.9557 0.7808 -0.8907 31 1 3.9564 0.7806 0.8892 32 1 3.7630 4.4810 1.2481 33 1 2.3651 3.3789 1.2486 34 1 3.8436 2.9420 2.1382 35 1 3.8422 2.9410 -2.1403 36 1 2.3643 3.3783 -1.2499 37 1 3.7622 4.4804 -1.2508 38 1 5.5909 4.8341 -0.0641 39 1 7.4893 5.8919 1.2647 40 1 9.9361 6.0428 1.4368 41 1 8.5891 -0.3414 -0.6960 42 1 7.8331 2.3281 -1.0686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182611265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:38 Heat of formation + Delta-G solvation = -146.446829 kcal Electronic energy + Delta-G solvation = -27690.118334 eV Core-core repulsion = 23549.787273 eV Total energy + Delta-G solvation = -4140.331061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.17296 -41.00922 -39.74162 -37.48394 -36.72511 -34.85560 -34.25578 -33.09921 -29.72858 -29.53398 -27.87306 -27.32617 -27.00557 -25.32846 -23.43335 -21.75239 -21.25947 -20.25293 -18.88254 -17.94883 -17.58568 -16.69445 -16.55492 -16.04010 -15.93592 -15.73850 -15.07111 -14.75879 -14.41210 -14.16247 -13.94746 -13.89429 -13.84524 -13.20587 -13.03266 -12.84965 -12.50042 -12.26847 -12.17974 -11.97354 -11.80150 -11.73888 -11.63411 -11.45755 -11.10818 -11.07657 -10.99764 -10.87404 -10.81914 -10.59027 -10.37183 -10.18292 -9.65986 -9.20540 -9.02945 -8.76879 -7.42221 -6.88565 -6.48324 -4.38049 2.06649 2.48799 2.55892 2.80934 3.11867 3.15145 3.17811 3.34187 3.74987 4.01515 4.43426 4.67009 4.75046 4.85715 4.87503 4.95249 5.02836 5.24757 5.29841 5.48376 5.56528 5.59763 5.66740 5.85977 5.88139 5.89492 5.90832 6.11506 6.13166 6.27515 6.39358 6.45438 6.79462 6.93853 7.00239 7.27275 7.45226 7.55983 7.63053 7.74464 8.05283 8.15510 8.32893 8.53797 8.86960 8.87941 8.89907 10.32151 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.003750 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.452268 B = 7464.553820 C = 9111.933025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.503 6.503 5 C -0.093 4.093 6 C -0.066 4.066 7 C -0.152 4.152 8 C -0.154 4.154 9 C 0.504 3.496 10 O -0.480 6.480 11 N -0.666 5.666 12 C 0.131 3.869 13 C -0.234 4.234 14 C -0.116 4.116 15 C -0.032 4.032 16 F -0.164 7.164 17 C 0.090 3.910 18 C -0.458 4.458 19 H 0.079 0.921 20 C 0.068 3.932 21 N -0.770 5.770 22 Si 0.914 3.086 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.130 4.130 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.396 0.604 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.281 0.719 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.041 0.576 0.450 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.311 3.689 4 O -0.392 6.392 5 C -0.130 4.130 6 C -0.069 4.069 7 C -0.209 4.209 8 C -0.211 4.211 9 C 0.288 3.712 10 O -0.351 6.351 11 N -0.311 5.311 12 C 0.038 3.962 13 C -0.255 4.255 14 C -0.136 4.136 15 C -0.053 4.053 16 F -0.143 7.143 17 C 0.086 3.914 18 C -0.487 4.487 19 H 0.097 0.903 20 C -0.151 4.151 21 N -0.394 5.394 22 Si 0.738 3.262 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.151 4.151 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.230 0.770 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.943 -0.135 0.489 15.951 hybrid contribution 0.256 -0.073 -0.100 0.284 sum -15.688 -0.208 0.389 15.694 Atomic orbital electron populations 1.23248 0.76554 1.03601 1.02454 1.86547 1.23269 1.33667 1.84037 1.23861 0.92247 0.81100 0.71715 1.90537 1.67450 1.35738 1.45452 1.21226 0.86438 0.97771 1.07612 1.20518 0.92754 0.94719 0.98912 1.22101 1.03361 1.00247 0.95237 1.22111 1.03459 1.00218 0.95295 1.20318 0.88977 0.84243 0.77653 1.90951 1.65340 1.33585 1.45240 1.43293 1.06176 1.08186 1.73434 1.17686 0.80789 0.98058 0.99617 1.19904 0.93537 1.02336 1.09772 1.20251 0.93297 0.98343 1.01670 1.18045 0.76105 1.02628 1.08499 1.91267 1.31033 1.96519 1.95468 1.17571 0.92503 0.90427 0.90867 1.19398 1.04405 0.91991 1.32933 0.90296 1.25930 0.95453 0.99896 0.93833 1.69856 1.15990 1.20283 1.33316 0.86224 0.80375 0.79842 0.79734 1.19511 1.20257 1.18705 1.21679 0.92199 0.99655 1.01610 0.91928 0.88245 0.91933 0.86602 0.86673 0.92030 0.89451 0.92459 0.92335 0.89407 0.92049 0.77003 0.88371 0.87885 0.90788 0.82425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.95 10.57 -39.24 -0.41 -4.37 16 3 C 0.47 5.55 7.37 36.01 0.27 5.81 16 4 O -0.50 -6.40 11.10 -18.75 -0.21 -6.61 16 5 C -0.09 -1.18 4.17 -27.88 -0.12 -1.29 16 6 C -0.07 -0.87 0.62 -155.66 -0.10 -0.97 16 7 C -0.15 -1.81 8.08 37.16 0.30 -1.51 16 8 C -0.15 -1.82 8.07 37.15 0.30 -1.52 16 9 C 0.50 8.94 6.32 -10.98 -0.07 8.87 16 10 O -0.48 -10.63 13.37 5.56 0.07 -10.56 16 11 N -0.67 -11.76 5.12 -9.90 -0.05 -11.81 16 12 C 0.13 2.90 6.29 -83.74 -0.53 2.37 16 13 C -0.23 -4.93 9.97 -39.11 -0.39 -5.32 16 14 C -0.12 -2.61 10.00 -39.62 -0.40 -3.01 16 15 C -0.03 -0.83 7.31 -38.62 -0.28 -1.11 16 16 F -0.16 -4.20 16.82 2.25 0.04 -4.16 16 17 C 0.09 2.46 5.55 -106.78 -0.59 1.87 16 18 C -0.46 -12.58 8.69 -37.79 -0.33 -12.91 16 19 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 20 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 21 N -0.77 -20.44 10.55 55.55 0.59 -19.85 16 22 Si 0.91 19.50 29.56 -169.99 -5.03 14.48 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 25 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 26 C -0.13 -3.36 7.30 -38.71 -0.28 -3.64 16 27 H 0.06 0.46 8.13 -51.92 -0.42 0.04 16 28 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 30 H 0.12 1.49 8.10 -51.93 -0.42 1.07 16 31 H 0.12 1.48 8.10 -51.93 -0.42 1.06 16 32 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 33 H 0.09 1.03 5.52 -51.93 -0.29 0.75 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.04 5.52 -51.93 -0.29 0.75 16 37 H 0.06 0.66 7.47 -51.93 -0.39 0.27 16 38 H 0.40 5.53 7.68 -40.82 -0.31 5.22 16 39 H 0.10 1.75 8.06 -52.48 -0.42 1.32 16 40 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 41 H 0.28 6.94 8.30 -40.82 -0.34 6.61 16 42 H 0.16 4.32 4.35 -52.49 -0.23 4.09 16 LS Contribution 351.45 15.07 5.30 5.30 Total: -1.00 -31.11 351.45 -6.19 -37.30 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.25 Total: 9.64 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -1.24 Total: -9.36 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.54 Total: -31.66 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.55 Total: -21.54 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.04 Total: -4.16 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.11 -6.19 -37.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182611265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.143 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds